Literature DB >> 29303421

Improving the induction fold of riboregulators for cyanobacteria.

Ippei Sakamoto1, Koichi Abe1, Sumiya Kawai1, Kaori Tsukakoshi1, Yuta Sakai1, Koji Sode1, Kazunori Ikebukuro1.   

Abstract

Cyanobacteria are ideal cellular factories for biochemical production because of their ability to fix CO2 by photosynthesis and convert this molecule into biochemicals. Previously, we engineered a riboregulator that enables post-transcriptional gene regulation in the cyanobacterium Synechocystis sp. PCC 6803. Here, we improved the riboregulator by designing two RNA species, taRNA and crRNA, to enhance its induction fold. We inserted nucleotides into the crRNA loop to enhance intermolecular hybridization and successfully improved its induction fold. The engineered riboregulator exhibited a higher induction fold than the previously engineered riboregulator in both Escherichia coli and Synechocystis sp. PCC 6803. This improved riboregulator can be used to control gene expression over a wide dynamic range in cyanobacteria.

Entities:  

Keywords:  Cyanobacteria; RNA engineering; post-transcriptional gene regulation; riboregulator; synthetic biology

Mesh:

Substances:

Year:  2018        PMID: 29303421      PMCID: PMC5927718          DOI: 10.1080/15476286.2017.1422470

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  24 in total

1.  Improving the gene-regulation ability of small RNAs by scaffold engineering in Escherichia coli.

Authors:  Yuta Sakai; Koichi Abe; Saki Nakashima; Wataru Yoshida; Stefano Ferri; Koji Sode; Kazunori Ikebukuro
Journal:  ACS Synth Biol       Date:  2013-12-18       Impact factor: 5.110

2.  Regulation of gene expression in diverse cyanobacterial species by using theophylline-responsive riboswitches.

Authors:  Amy T Ma; Calvin M Schmidt; James W Golden
Journal:  Appl Environ Microbiol       Date:  2014-08-22       Impact factor: 4.792

3.  Cyanobacterial conversion of carbon dioxide to 2,3-butanediol.

Authors:  John W K Oliver; Iara M P Machado; Hisanari Yoneda; Shota Atsumi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-07       Impact factor: 11.205

4.  Genetic switchboard for synthetic biology applications.

Authors:  Jarred M Callura; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

5.  Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas.

Authors:  M Bagdasarian; R Lurz; B Rückert; F C Franklin; M M Bagdasarian; J Frey; K N Timmis
Journal:  Gene       Date:  1981-12       Impact factor: 3.688

6.  Synthetic gene networks that count.

Authors:  Ari E Friedland; Timothy K Lu; Xiao Wang; David Shi; George Church; James J Collins
Journal:  Science       Date:  2009-05-29       Impact factor: 47.728

7.  Design of riboregulators for control of cyanobacterial (Synechocystis) protein expression.

Authors:  Koichi Abe; Yuta Sakai; Saki Nakashima; Masataka Araki; Wataru Yoshida; Koji Sode; Kazunori Ikebukuro
Journal:  Biotechnol Lett       Date:  2013-09-26       Impact factor: 2.461

8.  Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde.

Authors:  Shota Atsumi; Wendy Higashide; James C Liao
Journal:  Nat Biotechnol       Date:  2009-12       Impact factor: 54.908

9.  Scaffold-fused riboregulators for enhanced gene activation in Synechocystis sp. PCC 6803.

Authors:  Yuta Sakai; Koichi Abe; Saki Nakashima; James J Ellinger; Stefano Ferri; Koji Sode; Kazunori Ikebukuro
Journal:  Microbiologyopen       Date:  2015-04-10       Impact factor: 3.139

10.  Wide-dynamic-range promoters engineered for cyanobacteria.

Authors:  Hsin-Ho Huang; Peter Lindblad
Journal:  J Biol Eng       Date:  2013-04-22       Impact factor: 4.355

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  1 in total

Review 1.  Heterologous production of cyanobacterial compounds.

Authors:  Dipesh Dhakal; Manyun Chen; Hendrik Luesch; Yousong Ding
Journal:  J Ind Microbiol Biotechnol       Date:  2021-06-04       Impact factor: 4.258

  1 in total

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