| Literature DB >> 29301500 |
Miguel Patrício1, José Pereira2, Joana Crisóstomo3, Paulo Matafome3,4, Manuel Gomes5, Raquel Seiça3, Francisco Caramelo6.
Abstract
BACKGROUND: The goal of this exploratory study was to develop and assess a prediction model which can potentially be used as a biomarker of breast cancer, based on anthropometric data and parameters which can be gathered in routine blood analysis.Entities:
Keywords: Age; BMI; Biomarker; Breast cancer; Glucose; Resistin
Mesh:
Substances:
Year: 2018 PMID: 29301500 PMCID: PMC5755302 DOI: 10.1186/s12885-017-3877-1
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Fig. 1Flowchart of the computer routine for assessing the performance of each classification method when applied to n features
Descriptive statistics of the clinical features (notably, age, BMI and inflammatory and metabolic parameters) of the 64 patients with breast cancer and 52 healthy controlsa
| Patients | Controls | ||
|---|---|---|---|
| Age (years) | 53.0 (23.0) | 65.0 (33.2) | 0.479 |
| BMI (kg/m2) | 27.0 (4.6) | 28.3 (5.4) | 0.202 |
| Glucose (mg/dL) | 105.6 (26.6) | 88.2 (10.2) | <0.001 |
| Insulin (μU/mL) | 12.5 (12.3) | 6.9 (4.9) | 0.027 |
| HOMA | 3.6 (4.6) | 1.6 (1.2) | 0.003 |
| Leptin (ng/mL) | 26.6 (19.2) | 26.6 (19.3) | 0.949 |
| Adiponectin (μg/mL) | 10.1 (6.2) | 10.3 (7.6) | 0.767 |
| Resistin (ng/mL) | 17.3 (12.6) | 11.6 (11.4) | 0.002 |
| MCP-1(pg/dL) | 563.0 (384.0) | 499.7 (292.2) | 0.504 |
aValues are given as median (interquartile range). The p-values included in the table were obtained with Mann-Whitney U tests, after normality assumptions were assessed, for each variable, with a Shapiro-Wilk test. BMI body mass index, MCP-1 monocyte chemoattractant protein-1, HOMA homeostasis model assessment for insulin resistance
Fig. 2Profiles of the clinical features of features of patients with breast cancer (n = 64) and healthy controls (n = 52). BMI - body mass index; MCP-1 - monocyte chemoattractant protein-1, HOMA - homeostasis model assessment for insulin resistance
Anatomopathological characteristics for patients with breast cancera
| Tumor grade | Tumor stage | Tumor size | Lymph node involvement | ER, PR, CERB2 |
|---|---|---|---|---|
| I- 13 (21.3%) | 0–5 (7.8%) | ≤2 cm- 54 (84.4%) | Yes- 27 (42.2%) | ER+ 53 (82.8%) |
| II- 39 (63.9%) | I- 29 (45.3%) | >2 cm- 10 (15.6%) | No- 37 (57.8%) | ER- 5 (7.8%) |
| III- 9 (14.8%) | II- 30 (46.9%) | |||
| PR+ 52 (81.3%) |
aValues for qualitative variables are given as counts (percentages). The last column corresponds to the status of oestrogen (ER) and progesterone (PR) receptors and protein CerbB2
Univariate analysis of how well each parameter allows distinguishing between patients with BC and controlsa
| Variables | 95% CI for AUC | Sensitivity | Specificity |
|---|---|---|---|
| Age | [0.42, 0.64] | – | – |
| BMI | [0.46, 0.68] | – | – |
| Glucose | [0.68, 0.85] | 77 | 67 |
| Insulin | [0.52, 0.72] | 47 | 83 |
| HOMA | [0.56, 0.76] | 50 | 85 |
| Leptin | [0.39, 0.60] | – | – |
| Adiponectin | [0.41, 0.62] | – | – |
| Resistin | [0.57, 0.77] | 55 | 79 |
| MCP-1 | [0.36, 0.57] | – | – |
aA ROC analysis performed for each variable. The resulting 95% confidence intervals for the AUC were computed. For variables for which the confidence interval did not contain the number 0.5, the sensitivity and specificity that maximise Youden Index were computed
Multivariate analysis of how well the parameters allow distinguishing between patients with BC and controlsa
| Variables | Figures of interest | Classifier | ||
|---|---|---|---|---|
| LR | RF | SVM | ||
| V1-V2 | AUC | [0.76, 0.81] | [0.70, 0.75] | [0.76, 0.81] |
| Sensitivity | [0.75, 0.81] | [0.75, 0.82] | [0.81, 0.86] | |
| Specificity | [0.73, 0.80] | [0.63, 0.70] | [0.70, 0.76] | |
| V1-V3 | AUC | [0.76, 0.80] | [0.81, 0.85] | [0.82, 0.86] |
| Sensitivity | [0.74, 0.81] | [0.85, 0.90] | [0.87, 0.92] | |
| Specificity | [0.74, 0.80] | [0.72, 0.78] | [0.78, 0.83] | |
| V1-V4 | AUC | [0.79, 0.83] | [0.84, 0.88] | [0.87, 0.91] |
| Sensitivity | [0.72, 0.78] | [0.80, 0.86] | [0.82, 0.88] | |
| Specificity | [0.80, 0.87] | [0.81, 0.87] | [0.84, 0.90] | |
| V1-V5 | AUC | [0.79, 0.83] | [0.82, 0.87] | [0.86, 0.90] |
| Sensitivity | [0.73, 0.79] | [0.79, 0.85] | [0.84, 0.90] | |
| Specificity | [0.81, 0.87] | [0.77, 0.83] | [0.81, 0.87] | |
| V1-V6 | AUC | [0.78, 0.83] | [0.82, 0.86] | [0.83, 0.88] |
| Sensitivity | [0.74, 0.80] | [0.79, 0.85] | [0.81, 0.86] | |
| Specificity | [0.79, 0.85] | [0.76, 0.82] | [0.80, 0.86] | |
| V1-V9 | AUC | [0.76, 0.81] | [0.78, 0.83] | [0.81, 0.85] |
| Sensitivity | [0.70, 0.76] | [0.78, 0.85] | [0.75, 0.81] | |
| Specificity | [0.80, 0.86] | [0.70, 0.77] | [0.78, 0.84] | |
aFor each classifier (LR logistic regression, RF random forest, SVM support vector machine), predictive models were created taking in as predictors the variables deemed more significant. The predictive capacity of each model was computed resorting to a ROC analysis and determining the pair of values of specificity and sensitivity that maximise the Youden index. Again for each model, the resulting AUC value depends on the number of variables included, as can be seen on the table below, where V1 = Glucose, V2 = Resistin, V3 = Age, V4 = BMI - body mass index, V5 = HOMA - homeostasis model assessment for insulin resistance, V6 = Leptin, V7 = Insulin, V8 = Adiponectin, V9 = MCP-1 - monocyte chemoattractant protein-1
Fig. 3ROC curves corresponding to the best and worst Logistic Regression (LR) models generated with four predictors in the cross-validation procedure
Fig. 4ROC curves corresponding to the best and worst Random Forest (RF) models generated with four predictors in the cross-validation procedure
Fig. 5ROC curves corresponding to the best and worst Support Vector Machine (SVM) models generated with four predictors in the cross-validation procedure