Literature DB >> 29299843

Diversity of fungi associated with roots of Calanthe orchid species in Korea.

Myung Soo Park1, John A Eimes2, Sang Hoon Oh3, Hwa Jung Suh3, Seung-Yoon Oh1, Seobihn Lee1, Ki Hyeong Park1, Hyuk Joon Kwon4, Soo-Young Kim4, Young Woon Lim5.   

Abstract

While symbiotic fungi play a key role in the growth of endangered Calanthe orchid species, the relationship between fungal diversity and Calanthe species remains unclear. Here, we surveyed root associated fungal diversity of six Calanthe orchid species by sequencing the internal transcribed spacer (ITS) region using 454 pyrosequencing. Our results revealed that Paraboeremia and Coprinopsis are dominant fungal genera among Calanthe species. In terms of overall relative abundance, Paraboeremia was the most common fungal genus associated with Calanthe roots, followed by Coprinopsis. Overall fungal diversity showed a significant degree of variation depending on both location and Calanthe species. In terms of number of different fungal genera detected within Calanthe species, C. discolor had the most diverse fungal community, with 10 fungal genera detected. This study will contribute toward a better understanding of those fungi that are required for successful cultivation and conservation of Korean Calanthe species.

Entities:  

Keywords:  Calanthe; fungal diversity; next-generation sequencing; orchid-related fungi; orchidaceae

Mesh:

Year:  2018        PMID: 29299843     DOI: 10.1007/s12275-018-7319-9

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  18 in total

1.  Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas.

Authors:  D Lee Taylor; Melissa K McCormick
Journal:  New Phytol       Date:  2007-12-08       Impact factor: 10.151

2.  Symbiosis with an endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential.

Authors:  Alessandra Salvioli; Stefano Ghignone; Mara Novero; Lorella Navazio; Francesco Venice; Paolo Bagnaresi; Paola Bonfante
Journal:  ISME J       Date:  2015-06-05       Impact factor: 10.302

3.  Population, habitat and genetic correlates of mycorrhizal specialization in the 'cheating' orchids corallorhiza maculata and C. mertensiana

Authors: 
Journal:  Mol Ecol       Date:  1999-10       Impact factor: 6.185

4.  Diversity and host specificity of endophytic Rhizoctonia-like fungi from tropical orchids.

Authors:  J Tupac Otero; James D Ackerman; Paul Bayman
Journal:  Am J Bot       Date:  2002-11       Impact factor: 3.844

5.  Ecological specialization in mycorrhizal symbiosis leads to rarity in an endangered orchid.

Authors:  Nigel D Swarts; Elizabeth A Sinclair; Anthony Francis; Kingsley W Dixon
Journal:  Mol Ecol       Date:  2010-08       Impact factor: 6.185

6.  Novel indole S,O-bisdesmoside, calanthoside, the precursor glycoside of tryptanthrin, indirubin, and isatin, with increasing skin blood flow promoting effects, from two Calanthe species (Orchidaceae).

Authors:  M Yoshikawa; T Murakami; A Kishi; T Sakurama; H Matsuda; M Nomura; H Matsuda; M Kubo
Journal:  Chem Pharm Bull (Tokyo)       Date:  1998-05       Impact factor: 1.645

7.  A new phylogenetic analysis sheds new light on the relationships in the Calanthe alliance (Orchidaceae) in China.

Authors:  Jun-Wen Zhai; Guo-Qiang Zhang; Lin Li; Meina Wang; Li-Jun Chen; Shih-Wen Chung; Francisco Jiménez Rodríguez; Javier Francisco-Ortega; Si-Ren Lan; Fu-Wu Xing; Zhong-Jian Liu
Journal:  Mol Phylogenet Evol       Date:  2014-04-18       Impact factor: 4.286

8.  QIIME allows analysis of high-throughput community sequencing data.

Authors:  J Gregory Caporaso; Justin Kuczynski; Jesse Stombaugh; Kyle Bittinger; Frederic D Bushman; Elizabeth K Costello; Noah Fierer; Antonio Gonzalez Peña; Julia K Goodrich; Jeffrey I Gordon; Gavin A Huttley; Scott T Kelley; Dan Knights; Jeremy E Koenig; Ruth E Ley; Catherine A Lozupone; Daniel McDonald; Brian D Muegge; Meg Pirrung; Jens Reeder; Joel R Sevinsky; Peter J Turnbaugh; William A Walters; Jeremy Widmann; Tanya Yatsunenko; Jesse Zaneveld; Rob Knight
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

Review 9.  Hymenoscyphus pseudoalbidus, the causal agent of European ash dieback.

Authors:  Andrin Gross; Ottmar Holdenrieder; Marco Pautasso; Valentin Queloz; Thomas Niklaus Sieber
Journal:  Mol Plant Pathol       Date:  2013-10-07       Impact factor: 5.663

10.  Developmental processes of achlorophyllous orchid, Epipogium roseum: from seed germination to flowering under symbiotic cultivation with mycorrhizal fungus.

Authors:  Takahiro Yagame; Masahide Yamato; Masahiro Mii; Akira Suzuki; Koji Iwase
Journal:  J Plant Res       Date:  2006-12-01       Impact factor: 3.000

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  3 in total

1.  GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies.

Authors:  Tomáš Větrovský; Daniel Morais; Petr Kohout; Clémentine Lepinay; Camelia Algora; Sandra Awokunle Hollá; Barbara Doreen Bahnmann; Květa Bílohnědá; Vendula Brabcová; Federica D'Alò; Zander Rainier Human; Mayuko Jomura; Miroslav Kolařík; Jana Kvasničková; Salvador Lladó; Rubén López-Mondéjar; Tijana Martinović; Tereza Mašínová; Lenka Meszárošová; Lenka Michalčíková; Tereza Michalová; Sunil Mundra; Diana Navrátilová; Iñaki Odriozola; Sarah Piché-Choquette; Martina Štursová; Karel Švec; Vojtěch Tláskal; Michaela Urbanová; Lukáš Vlk; Jana Voříšková; Lucia Žifčáková; Petr Baldrian
Journal:  Sci Data       Date:  2020-07-13       Impact factor: 6.444

2.  Fungal diversity driven by bark features affects phorophyte preference in epiphytic orchids from southern China.

Authors:  Lorenzo Pecoraro; Hanne N Rasmussen; Sofia I F Gomes; Xiao Wang; Vincent S F T Merckx; Lei Cai; Finn N Rasmussen
Journal:  Sci Rep       Date:  2021-05-28       Impact factor: 4.379

Review 3.  Current Insight into Traditional and Modern Methods in Fungal Diversity Estimates.

Authors:  Ajay Kumar Gautam; Rajnish Kumar Verma; Shubhi Avasthi; Yogita Bohra; Bandarupalli Devadatha; Mekala Niranjan; Nakarin Suwannarach
Journal:  J Fungi (Basel)       Date:  2022-02-24
  3 in total

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