| Literature DB >> 29299237 |
Simone Bianchi1, Christine Cahalan1, Sophie Hale2, James Michael Gibbons1.
Abstract
Hemispherical photography (HP), implemented with cameras equipped with "fisheye" lenses, is a widely used method for describing forest canopies and light regimes. A promising technological advance is the availability of low-cost fisheye lenses for smartphone cameras. However, smartphone camera sensors cannot record a full hemisphere. We investigate whether smartphone HP is a cheaper and faster but still adequate operational alternative to traditional cameras for describing forest canopies and light regimes. We collected hemispherical pictures with both smartphone and traditional cameras in 223 forest sample points, across different overstory species and canopy densities. The smartphone image acquisition followed a faster and simpler protocol than that for the traditional camera. We automatically thresholded all images. We processed the traditional camera images for Canopy Openness (CO) and Site Factor estimation. For smartphone images, we took two pictures with different orientations per point and used two processing protocols: (i) we estimated and averaged total canopy gap from the two single pictures, and (ii) merging the two pictures together, we formed images closer to full hemispheres and estimated from them CO and Site Factors. We compared the same parameters obtained from different cameras and estimated generalized linear mixed models (GLMMs) between them. Total canopy gap estimated from the first processing protocol for smartphone pictures was on average significantly higher than CO estimated from traditional camera images, although with a consistent bias. Canopy Openness and Site Factors estimated from merged smartphone pictures of the second processing protocol were on average significantly higher than those from traditional cameras images, although with relatively little absolute differences and scatter. Smartphone HP is an acceptable alternative to HP using traditional cameras, providing similar results with a faster and cheaper methodology. Smartphone outputs can be directly used as they are for ecological studies, or converted with specific models for a better comparison to traditional cameras.Entities:
Keywords: canopy openness; light regime; site factors; total gap fraction
Year: 2017 PMID: 29299237 PMCID: PMC5743530 DOI: 10.1002/ece3.3567
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1Circular hemispherical images with a full‐frame camera (left) versus diagonal smartphone hemispherical images (right). Adapted from Schneider et al. (2009)
Overview of the study sites
| Forest | Location (WGS84) | Overstory type | Number of stands | Number of sample points |
|---|---|---|---|---|
| Clocaenog (Wales) | 53°04′N, 3°24′W | Spruce | 4 | 39 |
| Larch | 1 | 10 | ||
| Kielder (England) | 55°13′N, 2°27′W | Spruce | 4 | 37 |
| Aberfoyle (Scotland) | 56°13′N, 4°21′W | Larch | 2 | 20 |
| Spruce | 1 | 9 | ||
| Treborth (Wales) | 53°13′N, 4°10′W | Broadleaves | 1 | 10 |
| Newborough (Wales) | 53°09′N, 4°20′W | Pine | 2 | 20 |
| Mortimer (England) | 52°21′N, 2°45′W | Broadleaves | 1 | 8 |
| Douglas | 1 | 9 | ||
| Coed‐Y‐Brenin (Wales) | 52°48′N, 3°53′W | Douglas | 2 | 17 |
| Wykeham (England) | 54°16′N, 0°33′W | Pine | 4 | 36 |
| Spruce | 1 | 8 | ||
| Total | 24 | 223 | ||
Figure 2Simplified workflow of the various steps of image processing, from the original pictures to the output values
Figure 3Boxplots of Global Site Factor (GSF) from circular hemispherical images for different overstory species. The horizontal line shows the median value, the boxes represent the values between the first and third quartiles, and the vertical lines are an additional 1.5 interquartile range above and below them
Figure 4Scatterplot of Canopy Openness (CO) from circular image with Total Gap (TG) from smartphone, showing the line of identity (dashed black line), both estimated using the EnhanceHP method. Smartphone values were obtained by averaging the single images results for each plot
Akaike information criteria comparison between different generalized linear mixed model structures for all analyses
| Model | CO ~ TG | CO ~ Cosm | ISF ~ ISFsm | DSF ~ DSFsm | GSF ~ GSFsm |
|---|---|---|---|---|---|
|
| −984 | −980 | −852 | −761 | −877 |
|
| −991 | −988 | −861 | −768 | −885 |
|
| −999 | −997 | −869 | −776 | −894 |
|
| − | − | − | −792 | − |
|
| −990 | −980 | −869 | −780 | −894 |
|
| −1,009 | −997 | −885 | − | −908 |
TG is Total Gap, CO is Canopy Openness, and ISF, DSF, and GSF are, respectively, Indirect Site Factor, Direct Site Factor, and Global Site Factor (“sm” for smartphone HP). In the formulas, y and x are the respective circular HP and smartphone HP parameter considered, OV is the overstory type, camera is the type of Nikon Coolpix used for circular images, and HFG is the height from the ground at which the pictures were taken (see Methodology). The lowest AIC values are shown in bold.
Results of generalized linear mixed models between the outputs estimated by circular and smartphone HP pictures, using the EnhanceHP method
| Fixed effects | CO ~ TG | CO ~ COsm | ISF ~ ISFsm | DSF ~ DSFsm | GSF ~ GSFsm | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Value |
|
| Value |
|
| Value |
|
| Value |
|
| Value |
|
| |
| (Intercept) | 0.025 | 0.010 | .013 | 0.032 | 0.009 | .001 | 0.042 | 0.012 | .000 | 0.049 | 0.011 | .000 | 0.049 | 0.011 | .000 |
|
| 0.275 | 0.082 | .001 | 0.309 | 0.118 | .009 | 0.355 | 0.095 | .000 | 0.764 | 0.046 | .000 | 0.292 | 0.104 | .002 |
|
| 0.197 | 0.080 | .014 | 0.386 | 0.120 | .002 | 0.347 | 0.094 | .000 | – | – | – | 0.376 | 0.107 | .001 |
|
| 0.228 | 0.081 | .005 | 0.437 | 0.112 | .000 | 0.341 | 0.086 | .000 | – | – | – | 0.384 | 0.097 | .000 |
|
| 0.398 | 0.083 | .000 | 0.694 | 0.118 | .000 | 0.471 | 0.090 | .000 | – | – | – | 0.542 | 0.101 | .000 |
|
| 0.267 | 0.081 | .001 | 0.610 | 0.113 | .000 | 0.487 | 0.088 | .000 | – | – | – | 0.560 | 0.096 | .000 |
CO is Canopy Openness, TG is Total Gap, and ISF, DSF, and GSF are, respectively, Indirect Site Factor, Direct Site Factor, and Global Site Factor (“sm” for smartphone outputs). For the fixed effects, “x” indicates the smartphone HP parameter used in the model, and OV is the overstory type.
Figure 5Scatterplots of Canopy Openness and Site Factors (respectively, ISF for Indirect, DSF for Direct, and GSF for Global Site Factor) estimated from different cameras, using EnhanceHP method, showing the line of identity (dashed black line). Smartphone values were obtained from merged images