Literature DB >> 29294368

The cell free protein synthesis system from the model filamentous fungus Neurospora crassa.

Cheng Wu1, Ananya Dasgupta1, Lunda Shen1, Deborah Bell-Pedersen1, Matthew S Sachs2.   

Abstract

Cell-free protein synthesis (CFPS) can be used in many applications to produce polypeptides and to analyze mechanisms of mRNA translation. Here we describe how to make and use a CPFS system from the model filamentous fungus Neurospora crassa. The extensive genetic resources available in this system provide capacities to exploit robust CFPS for understanding translational control. Included are procedures for the growth and harvesting of cells, the preparation of cell-free extracts that serve as the source of the translational machinery in the CFPS and the preparation of synthetic mRNA to program the CFPS. Methods to accomplish cell-free translation and analyze protein synthesis, and to map positions of ribosomes on mRNAs by toeprinting, are described.
Copyright © 2017. Published by Elsevier Inc.

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Year:  2017        PMID: 29294368      PMCID: PMC6047757          DOI: 10.1016/j.ymeth.2017.12.003

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  23 in total

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Journal:  Mol Cell Biol       Date:  1997-09       Impact factor: 4.272

6.  Arginine changes the conformation of the arginine attenuator peptide relative to the ribosome tunnel.

Authors:  Cheng Wu; Jiajie Wei; Pen-Jen Lin; Liwei Tu; Carol Deutsch; Arthur E Johnson; Matthew S Sachs
Journal:  J Mol Biol       Date:  2012-01-05       Impact factor: 5.469

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Authors:  Z Wang; M S Sachs
Journal:  J Biol Chem       Date:  1997-01-03       Impact factor: 5.157

8.  Physical evidence for distinct mechanisms of translational control by upstream open reading frames.

Authors:  A Gaba; Z Wang; T Krishnamoorthy; A G Hinnebusch; M S Sachs
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

9.  The stringency of start codon selection in the filamentous fungus Neurospora crassa.

Authors:  Jiajie Wei; Ying Zhang; Ivaylo P Ivanov; Matthew S Sachs
Journal:  J Biol Chem       Date:  2013-02-08       Impact factor: 5.157

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Authors:  Z Wang; P Fang; M S Sachs
Journal:  Mol Cell Biol       Date:  1998-12       Impact factor: 4.272

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  7 in total

1.  Structure of the translating Neurospora ribosome arrested by cycloheximide.

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Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-30       Impact factor: 11.205

2.  Cell-Free Protein Synthesis with Fungal Lysates for the Rapid Production of Unspecific Peroxygenases.

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3.  Cell-free Translation: Preparation and Validation of Translation-competent Extracts from Saccharomyces cerevisiae.

Authors:  Brandon M Trainor; Anton A Komar; Dimitri G Pestov; Natalia Shcherbik
Journal:  Bio Protoc       Date:  2021-09-20

4.  eRF1 mediates codon usage effects on mRNA translation efficiency through premature termination at rare codons.

Authors:  Qian Yang; Chien-Hung Yu; Fangzhou Zhao; Yunkun Dang; Cheng Wu; Pancheng Xie; Matthew S Sachs; Yi Liu
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

5.  Development, validation, and application of the ribosome separation and reconstitution system for protein translation in vitro.

Authors:  Brandon M Trainor; Dimitri G Pestov; Natalia Shcherbik
Journal:  RNA       Date:  2021-08-27       Impact factor: 4.942

Review 6.  Cell-Free Protein Synthesis: A Promising Option for Future Drug Development.

Authors:  Srujan Kumar Dondapati; Marlitt Stech; Anne Zemella; Stefan Kubick
Journal:  BioDrugs       Date:  2020-06       Impact factor: 5.807

Review 7.  Cell-free microcompartmentalised transcription-translation for the prototyping of synthetic communication networks.

Authors:  Emilien Dubuc; Pascal A Pieters; Ardjan J van der Linden; Jan Cm van Hest; Wilhelm Ts Huck; Tom Fa de Greef
Journal:  Curr Opin Biotechnol       Date:  2018-12-26       Impact factor: 10.279

  7 in total

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