Literature DB >> 29292835

New tools and resources in metabolomics: 2016-2017.

Biswapriya B Misra1.   

Abstract

Rapid advances in mass spectrometry (MS) and nuclear magnetic resonance (NMR)-based platforms for metabolomics have led to an upsurge of data every single year. Newer high-throughput platforms, hyphenated technologies, miniaturization, and tool kits in data acquisition efforts in metabolomics have led to additional challenges in metabolomics data pre-processing, analysis, interpretation, and integration. Thanks to the informatics, statistics, and computational community, new resources continue to develop for metabolomics researchers. The purpose of this review is to provide a summary of the metabolomics tools, software, and databases that were developed or improved during 2016-2017, thus, enabling readers, developers, and researchers access to a succinct but thorough list of resources for further improvisation, implementation, and application in due course of time.
© 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  Data; Network; Software; Statistics; Visualization; Workflow

Mesh:

Year:  2018        PMID: 29292835     DOI: 10.1002/elps.201700441

Source DB:  PubMed          Journal:  Electrophoresis        ISSN: 0173-0835            Impact factor:   3.535


  13 in total

Review 1.  Nutritional Metabolomics in Cancer Epidemiology: Current Trends, Challenges, and Future Directions.

Authors:  Emma E McGee; Rama Kiblawi; Mary C Playdon; A Heather Eliassen
Journal:  Curr Nutr Rep       Date:  2019-09

2.  Autonomous METLIN-Guided In-source Fragment Annotation for Untargeted Metabolomics.

Authors:  Xavier Domingo-Almenara; J Rafael Montenegro-Burke; Carlos Guijas; Erica L-W Majumder; H Paul Benton; Gary Siuzdak
Journal:  Anal Chem       Date:  2019-02-11       Impact factor: 6.986

3.  MIAMI--a tool for non-targeted detection of metabolic flux changes for mode of action identification.

Authors:  Christian-Alexander Dudek; Carsten Reuse; Regine Fuchs; Janneke Hendriks; Veronique Starck; Karsten Hiller
Journal:  Bioinformatics       Date:  2020-06-01       Impact factor: 6.937

4.  Metabolic basis of neuronal vulnerability to ischemia; an in vivo untargeted metabolomics approach.

Authors:  Sherif Rashad; Daisuke Saigusa; Takahiro Yamazaki; Yotaro Matsumoto; Yoshihisa Tomioka; Ritsumi Saito; Akira Uruno; Kuniyasu Niizuma; Masayuki Yamamoto; Teiji Tominaga
Journal:  Sci Rep       Date:  2020-04-16       Impact factor: 4.379

Review 5.  How Viral and Intracellular Bacterial Pathogens Reprogram the Metabolism of Host Cells to Allow Their Intracellular Replication.

Authors:  Wolfgang Eisenreich; Thomas Rudel; Jürgen Heesemann; Werner Goebel
Journal:  Front Cell Infect Microbiol       Date:  2019-03-04       Impact factor: 5.293

Review 6.  Existing and Emerging Metabolomic Tools for ALS Research.

Authors:  Christine Germeys; Tijs Vandoorne; Valérie Bercier; Ludo Van Den Bosch
Journal:  Genes (Basel)       Date:  2019-12-05       Impact factor: 4.096

7.  An improved method for extraction of polar and charged metabolites from cyanobacteria.

Authors:  Charulata B Prasannan; Damini Jaiswal; Rose Davis; Pramod P Wangikar
Journal:  PLoS One       Date:  2018-10-04       Impact factor: 3.240

Review 8.  Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics.

Authors:  Ivana Blaženović; Tobias Kind; Jian Ji; Oliver Fiehn
Journal:  Metabolites       Date:  2018-05-10

9.  mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics.

Authors:  Nils Hoffmann; Joel Rein; Timo Sachsenberg; Jürgen Hartler; Kenneth Haug; Gerhard Mayer; Oliver Alka; Saravanan Dayalan; Jake T M Pearce; Philippe Rocca-Serra; Da Qi; Martin Eisenacher; Yasset Perez-Riverol; Juan Antonio Vizcaíno; Reza M Salek; Steffen Neumann; Andrew R Jones
Journal:  Anal Chem       Date:  2019-02-13       Impact factor: 6.986

Review 10.  The metaRbolomics Toolbox in Bioconductor and beyond.

Authors:  Jan Stanstrup; Corey D Broeckling; Rick Helmus; Nils Hoffmann; Ewy Mathé; Thomas Naake; Luca Nicolotti; Kristian Peters; Johannes Rainer; Reza M Salek; Tobias Schulze; Emma L Schymanski; Michael A Stravs; Etienne A Thévenot; Hendrik Treutler; Ralf J M Weber; Egon Willighagen; Michael Witting; Steffen Neumann
Journal:  Metabolites       Date:  2019-09-23
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