Literature DB >> 29288729

Extracellular vesicles or free circulating DNA: where to search for BRAF and cKIT mutations?

Jennifer Klump1, Ulrike Phillipp2, Marie Follo2, Anna Eremin1, Hannes Lehmann1, Sigrun Nestel3, Nikolas von Bubnoff2, Irina Nazarenko4.   

Abstract

Clinical evidence in oncology argues for the advantages of performing molecular analysis of blood biomarkers to provide information about systemic changes and tumor heterogeneity. Whereas the diagnostic value of cell-free circulating DNA (fcDNA) has successfully been demonstrated in several studies, DNA enclosed in extracellular vesicles (EV) has only recently been described, and its potential diagnostic value is unclear. We established a protocol for separation of EV and fc fractions and tested for presence of mutant BRAFV600E mediating resistance to Vemurafenib and cKITD816V mediating resistance to Imatinib in blood of patients with melanoma and mastocytosis. Our results show that EV contain significantly higher amounts of total DNA as compared to the fc fraction. However, about ten-fold higher copy numbers of the wild type and mutant BRAF and cKIT were detected in the fcDNA fraction supporting its diagnostic value and pointing to differences in fc and EV DNA content.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  BRAF; BRAFV600E; Extracellular vesicles; Free-circulating DNA; Liquid biopsy; Predictive biomarkers; Therapy monitoring; cKIT; cKITD816V

Mesh:

Substances:

Year:  2017        PMID: 29288729     DOI: 10.1016/j.nano.2017.12.009

Source DB:  PubMed          Journal:  Nanomedicine        ISSN: 1549-9634            Impact factor:   5.307


  12 in total

Review 1.  Molecular Profiling of Liquid Biopsy Samples for Precision Medicine.

Authors:  Camila D M Campos; Joshua M Jackson; Małgorzata A Witek; Steven A Soper
Journal:  Cancer J       Date:  2018 Mar/Apr       Impact factor: 3.360

Review 2.  Single extracellular vesicle analysis for early cancer detection.

Authors:  Scott Ferguson; Katherine S Yang; Ralph Weissleder
Journal:  Trends Mol Med       Date:  2022-05-24       Impact factor: 15.272

3.  Defining Optimal Conditions for Tumor Extracellular Vesicle DNA Extraction for Mutation Profiling.

Authors:  Julia Elzanowska; Laura Berrocal; Beatriz García-Peláez; Marta Vives-Usano; Beatriz Passos Sebo; Joana Maia; Silvia Batista; Jaakko Teppo; Markku Varjosalo; Maria Carolina Strano Moraes; Miguel Ángel Molina-Vila; Bruno Costa-Silva
Journal:  Cancers (Basel)       Date:  2022-07-02       Impact factor: 6.575

4.  A Protocol for Cancer-Related Mutation Detection on Exosomal DNA in Clinical Application.

Authors:  Zhe-Ying Wang; Rui-Xian Wang; Xiao-Qing Ding; Xuan Zhang; Xiao-Rong Pan; Jian-Hua Tong
Journal:  Front Oncol       Date:  2020-09-11       Impact factor: 6.244

Review 5.  Detection of Gene Mutations in Liquid Biopsy of Melanoma Patients: Overview and Future Perspectives.

Authors:  Nasr Alrabadi; Razan Haddad; Ahmed K Alomari
Journal:  Curr Treat Options Oncol       Date:  2020-02-11

Review 6.  Cell-free DNA discoveries in human reproductive medicine: providing a new tool for biomarker and genetic assays in ART.

Authors:  Maryam Qasemi; Reza Mahdian; Fardin Amidi
Journal:  J Assist Reprod Genet       Date:  2021-01-09       Impact factor: 3.412

Review 7.  Next-Generation Cancer Biomarkers: Extracellular Vesicle DNA as a Circulating Surrogate of Tumor DNA.

Authors:  Samuel Amintas; Véronique Vendrely; Charles Dupin; Louis Buscail; Christophe Laurent; Barbara Bournet; Jean-Philippe Merlio; Aurélie Bedel; François Moreau-Gaudry; Julian Boutin; Sandrine Dabernat; Etienne Buscail
Journal:  Front Cell Dev Biol       Date:  2021-02-02

8.  Kinetics and Topology of DNA Associated with Circulating Extracellular Vesicles Released during Exercise.

Authors:  Elmo W I Neuberger; Barlo Hillen; Katharina Mayr; Perikles Simon; Eva-Maria Krämer-Albers; Alexandra Brahmer
Journal:  Genes (Basel)       Date:  2021-04-02       Impact factor: 4.096

9.  Isolation of extracellular vesicles improves the detection of mutant DNA from plasma of metastatic melanoma patients.

Authors:  Davide Zocco; Simona Bernardi; Mauro Novelli; Chiara Astrua; Paolo Fava; Natasa Zarovni; Francesco M Carpi; Laura Bianciardi; Ottavia Malavenda; Pietro Quaglino; Chiara Foroni; Domenico Russo; Antonio Chiesi; Maria Teresa Fierro
Journal:  Sci Rep       Date:  2020-09-25       Impact factor: 4.379

Review 10.  Extracellular Vesicles and Their Role in the Spatial and Temporal Expansion of Tumor-Immune Interactions.

Authors:  Simone Lipinski; Katharina Tiemann
Journal:  Int J Mol Sci       Date:  2021-03-25       Impact factor: 5.923

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