Literature DB >> 29284669

MYC Drives a Subset of High-Risk Pediatric Neuroblastomas and Is Activated through Mechanisms Including Enhancer Hijacking and Focal Enhancer Amplification.

Mark W Zimmerman1, Yu Liu2, Shuning He1, Adam D Durbin1, Brian J Abraham3, John Easton2, Ying Shao2, Beisi Xu2, Shizhen Zhu4, Xiaoling Zhang4, Zhaodong Li1, Nina Weichert-Leahey1, Richard A Young5,6, Jinghui Zhang7, A Thomas Look8.   

Abstract

The amplified MYCN gene serves as an oncogenic driver in approximately 20% of high-risk pediatric neuroblastomas. Here, we show that the family member MYC is a potent transforming gene in a separate subset of high-risk neuroblastoma cases (∼10%), based on (i) its upregulation by focal enhancer amplification or genomic rearrangements leading to enhancer hijacking, and (ii) its ability to transform neuroblastoma precursor cells in a transgenic animal model. The aberrant regulatory elements associated with oncogenic MYC activation include focally amplified distal enhancers and translocation of highly active enhancers from other genes to within topologically associating domains containing the MYC gene locus. The clinical outcome for patients with high levels of MYC expression is virtually identical to that of patients with amplification of the MYCN gene, a known high-risk feature of this disease. Together, these findings establish MYC as a bona fide oncogene in a clinically significant group of high-risk childhood neuroblastomas.Significance: Amplification of the MYCN oncogene is a recognized hallmark of high-risk pediatric neuroblastoma. Here, we demonstrate that MYC is also activated as a potent oncogene in a distinct subset of neuroblastoma cases through either focal amplification of distal enhancers or enhancer hijacking mediated by chromosomal translocation. Cancer Discov; 8(3); 320-35. ©2017 AACR.This article is highlighted in the In This Issue feature, p. 253. ©2017 American Association for Cancer Research.

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Year:  2017        PMID: 29284669      PMCID: PMC5856009          DOI: 10.1158/2159-8290.CD-17-0993

Source DB:  PubMed          Journal:  Cancer Discov        ISSN: 2159-8274            Impact factor:   39.397


  51 in total

1.  Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes.

Authors:  Jan J Molenaar; Jan Koster; Danny A Zwijnenburg; Peter van Sluis; Linda J Valentijn; Ida van der Ploeg; Mohamed Hamdi; Johan van Nes; Bart A Westerman; Jennemiek van Arkel; Marli E Ebus; Franciska Haneveld; Arjan Lakeman; Linda Schild; Piet Molenaar; Peter Stroeken; Max M van Noesel; Ingrid Ora; Evan E Santo; Huib N Caron; Ellen M Westerhout; Rogier Versteeg
Journal:  Nature       Date:  2012-02-22       Impact factor: 49.962

2.  Super-enhancers in the control of cell identity and disease.

Authors:  Denes Hnisz; Brian J Abraham; Tong Ihn Lee; Ashley Lau; Violaine Saint-André; Alla A Sigova; Heather A Hoke; Richard A Young
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

3.  Activated ALK collaborates with MYCN in neuroblastoma pathogenesis.

Authors:  Shizhen Zhu; Jeong-Soo Lee; Feng Guo; Jimann Shin; Antonio R Perez-Atayde; Jeffery L Kutok; Scott J Rodig; Donna S Neuberg; Daniel Helman; Hui Feng; Rodney A Stewart; Wenchao Wang; Rani E George; John P Kanki; A Thomas Look
Journal:  Cancer Cell       Date:  2012-03-20       Impact factor: 31.743

4.  Transcriptional amplification in tumor cells with elevated c-Myc.

Authors:  Charles Y Lin; Jakob Lovén; Peter B Rahl; Ronald M Paranal; Christopher B Burge; James E Bradner; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2012-09-28       Impact factor: 41.582

5.  Exploring genomic alteration in pediatric cancer using ProteinPaint.

Authors:  Xin Zhou; Michael N Edmonson; Mark R Wilkinson; Aman Patel; Gang Wu; Yu Liu; Yongjin Li; Zhaojie Zhang; Michael C Rusch; Matthew Parker; Jared Becksfort; James R Downing; Jinghui Zhang
Journal:  Nat Genet       Date:  2016-01       Impact factor: 38.330

6.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

7.  Selective inhibition of tumor oncogenes by disruption of super-enhancers.

Authors:  Jakob Lovén; Heather A Hoke; Charles Y Lin; Ashley Lau; David A Orlando; Christopher R Vakoc; James E Bradner; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

8.  Amplification of N-myc in untreated human neuroblastomas correlates with advanced disease stage.

Authors:  G M Brodeur; R C Seeger; M Schwab; H E Varmus; J M Bishop
Journal:  Science       Date:  1984-06-08       Impact factor: 47.728

9.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

Review 10.  11q deletion in neuroblastoma: a review of biological and clinical implications.

Authors:  Vid Mlakar; Simona Jurkovic Mlakar; Gonzalo Lopez; John M Maris; Marc Ansari; Fabienne Gumy-Pause
Journal:  Mol Cancer       Date:  2017-06-29       Impact factor: 27.401

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  63 in total

1.  CCND2 and CCND3 hijack immunoglobulin light-chain enhancers in cyclin D1- mantle cell lymphoma.

Authors:  David Martín-Garcia; Alba Navarro; Rafael Valdés-Mas; Guillem Clot; Jesús Gutiérrez-Abril; Miriam Prieto; Inmaculada Ribera-Cortada; Renata Woroniecka; Grzegorz Rymkiewicz; Susanne Bens; Laurence de Leval; Andreas Rosenwald; Judith A Ferry; Eric D Hsi; Kai Fu; Jan Delabie; Dennis Weisenburger; Daphne de Jong; Fina Climent; Sheila J O'Connor; Steven H Swerdlow; David Torrents; Sergi Beltran; Blanca Espinet; Blanca González-Farré; Luis Veloza; Dolors Costa; Estella Matutes; Reiner Siebert; German Ott; Leticia Quintanilla-Martinez; Elaine S Jaffe; Carlos López-Otín; Itziar Salaverria; Xose S Puente; Elias Campo; Sílvia Beà
Journal:  Blood       Date:  2018-12-11       Impact factor: 22.113

Review 2.  Pediatric Cancer Models in Zebrafish.

Authors:  Mattie J Casey; Rodney A Stewart
Journal:  Trends Cancer       Date:  2020-03-13

Review 3.  The MYC Enhancer-ome: Long-Range Transcriptional Regulation of MYC in Cancer.

Authors:  Olga Lancho; Daniel Herranz
Journal:  Trends Cancer       Date:  2018-11-02

4.  Enhanced expression of MycN/CIP2A drives neural crest toward a neural stem cell-like fate: Implications for priming of neuroblastoma.

Authors:  Laura Kerosuo; Pushpa Neppala; Jenny Hsin; Sofie Mohlin; Felipe Monteleone Vieceli; Zsofia Török; Anni Laine; Jukka Westermarck; Marianne E Bronner
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-18       Impact factor: 11.205

5.  Targeting the Chromosomal Passenger Complex Subunit INCENP Induces Polyploidization, Apoptosis, and Senescence in Neuroblastoma.

Authors:  Ming Sun; Veronica Veschi; Sukriti Bagchi; Man Xu; Arnulfo Mendoza; Zhihui Liu; Carol J Thiele
Journal:  Cancer Res       Date:  2019-08-15       Impact factor: 12.701

6.  Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes.

Authors:  Xiaotao Wang; Jie Xu; Baozhen Zhang; Ye Hou; Fan Song; Huijue Lyu; Feng Yue
Journal:  Nat Methods       Date:  2021-06-03       Impact factor: 28.547

7.  Whole genome, transcriptome and methylome profiling enhances actionable target discovery in high-risk pediatric cancer.

Authors:  Marie Wong; Chelsea Mayoh; Loretta M S Lau; David S Ziegler; Paul G Ekert; Mark J Cowley; Dong-Anh Khuong-Quang; Mark Pinese; Amit Kumar; Paulette Barahona; Emilie E Wilkie; Patricia Sullivan; Rachel Bowen-James; Mustafa Syed; Iñigo Martincorena; Federico Abascal; Alexandra Sherstyuk; Noemi A Bolanos; Jonathan Baber; Peter Priestley; M Emmy M Dolman; Emmy D G Fleuren; Marie-Emilie Gauthier; Emily V A Mould; Velimir Gayevskiy; Andrew J Gifford; Dylan Grebert-Wade; Patrick A Strong; Elodie Manouvrier; Meera Warby; David M Thomas; Judy Kirk; Katherine Tucker; Tracey O'Brien; Frank Alvaro; Geoffry B McCowage; Luciano Dalla-Pozza; Nicholas G Gottardo; Heather Tapp; Paul Wood; Seong-Lin Khaw; Jordan R Hansford; Andrew S Moore; Murray D Norris; Toby N Trahair; Richard B Lock; Vanessa Tyrrell; Michelle Haber; Glenn M Marshall
Journal:  Nat Med       Date:  2020-10-05       Impact factor: 53.440

8.  Limited antitumor activity of combined BET and MEK inhibition in neuroblastoma.

Authors:  Jason R Healy; Lori S Hart; Alexander L Shazad; Maria E Gagliardi; Matthew Tsang; Jimmy Elias; Jacob Ruden; Alvin Farrel; Jo Lynne Rokita; Yimei Li; Anastasia Wyce; Olena Barbash; Vandana Batra; Minu Samanta; John M Maris; Robert W Schnepp
Journal:  Pediatr Blood Cancer       Date:  2020-04-19       Impact factor: 3.167

Review 9.  Tales from topographic oceans: topologically associated domains and cancer.

Authors:  Moray J Campbell
Journal:  Endocr Relat Cancer       Date:  2019-11       Impact factor: 5.678

10.  Epigenetic plasticity of enhancers in cancer.

Authors:  Jie Yao; Ji Chen; Lian-Yun Li; Min Wu
Journal:  Transcription       Date:  2020-01-16
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