Literature DB >> 31944157

Epigenetic plasticity of enhancers in cancer.

Jie Yao1, Ji Chen1, Lian-Yun Li1, Min Wu1.   

Abstract

Enhancers are cis-acting elements with many sites bound by transcription factors and activate transcription over long distance. Histone modifications are critical for enhancer activity and utilized as hallmarks for the identification of putative enhancers. Monomethylation of histone H3 lysine 4 (H3K4me1) is the mark for enhancer priming; acetylation of histone H3 lysine 27 (H3K27ac) for active enhancers and trimethylation of histone H3 lysine 27 (H3K27me3) for silent enhancers. Recent studies from multiple groups have provided evidence that enhancer reprogramming, especially gain of enhancer activity, is closely related to tumorigenesis and cancer development. In this review, we will summarize the recent discoveries about enhancer regulation and the mechanisms of enhancer reprogramming in tumorigenesis, and discuss the potential application of enhancer manipulation in precision medicine.

Entities:  

Keywords:  Enhancer; H3K27ac; H3K27me3; H3K4me1; cancer; histone modification

Year:  2020        PMID: 31944157      PMCID: PMC7053964          DOI: 10.1080/21541264.2020.1713682

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  108 in total

1.  Genome-wide characterization of mammalian promoters with distal enhancer functions.

Authors:  Lan T M Dao; Ariel O Galindo-Albarrán; Jaime A Castro-Mondragon; Charlotte Andrieu-Soler; Alejandra Medina-Rivera; Charbel Souaid; Guillaume Charbonnier; Aurélien Griffon; Laurent Vanhille; Tharshana Stephen; Jaafar Alomairi; David Martin; Magali Torres; Nicolas Fernandez; Eric Soler; Jacques van Helden; Denis Puthier; Salvatore Spicuglia
Journal:  Nat Genet       Date:  2017-06-05       Impact factor: 38.330

2.  Kdm6A Protects Against Hypoxia-Induced Cardiomyocyte Apoptosis via H3K27me3 Demethylation of Ncx Gene.

Authors:  Yu Li; Xin Quan; Xialing Li; Yu Pan; Tao Zhang; Zhuo Liang; Yunlong Wang
Journal:  J Cardiovasc Transl Res       Date:  2019-03-18       Impact factor: 4.132

Review 3.  Exploitation of EP300 and CREBBP Lysine Acetyltransferases by Cancer.

Authors:  Narsis Attar; Siavash K Kurdistani
Journal:  Cold Spring Harb Perspect Med       Date:  2017-03-01       Impact factor: 6.915

4.  Super-Enhancer-Mediated RNA Processing Revealed by Integrative MicroRNA Network Analysis.

Authors:  Hiroshi I Suzuki; Richard A Young; Phillip A Sharp
Journal:  Cell       Date:  2017-03-09       Impact factor: 41.582

5.  MYC Drives a Subset of High-Risk Pediatric Neuroblastomas and Is Activated through Mechanisms Including Enhancer Hijacking and Focal Enhancer Amplification.

Authors:  Mark W Zimmerman; Yu Liu; Shuning He; Adam D Durbin; Brian J Abraham; John Easton; Ying Shao; Beisi Xu; Shizhen Zhu; Xiaoling Zhang; Zhaodong Li; Nina Weichert-Leahey; Richard A Young; Jinghui Zhang; A Thomas Look
Journal:  Cancer Discov       Date:  2017-12-28       Impact factor: 39.397

6.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

7.  Mll3 and Mll4 Facilitate Enhancer RNA Synthesis and Transcription from Promoters Independently of H3K4 Monomethylation.

Authors:  Kristel M Dorighi; Tomek Swigut; Telmo Henriques; Natarajan V Bhanu; Benjamin S Scruggs; Nataliya Nady; Christopher D Still; Benjamin A Garcia; Karen Adelman; Joanna Wysocka
Journal:  Mol Cell       Date:  2017-05-05       Impact factor: 17.970

8.  Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation.

Authors:  Kwang Won Jeong; Kyunghwan Kim; Alan Jialun Situ; Tobias S Ulmer; Woojin An; Michael R Stallcup
Journal:  Nat Struct Mol Biol       Date:  2011-11-13       Impact factor: 15.369

9.  Enhancer redundancy provides phenotypic robustness in mammalian development.

Authors:  Marco Osterwalder; Iros Barozzi; Virginie Tissières; Yoko Fukuda-Yuzawa; Brandon J Mannion; Sarah Y Afzal; Elizabeth A Lee; Yiwen Zhu; Ingrid Plajzer-Frick; Catherine S Pickle; Momoe Kato; Tyler H Garvin; Quan T Pham; Anne N Harrington; Jennifer A Akiyama; Veena Afzal; Javier Lopez-Rios; Diane E Dickel; Axel Visel; Len A Pennacchio
Journal:  Nature       Date:  2018-01-31       Impact factor: 49.962

10.  Systematic identification of regulatory variants associated with cancer risk.

Authors:  Song Liu; Yuwen Liu; Qin Zhang; Jiayu Wu; Junbo Liang; Shan Yu; Gong-Hong Wei; Kevin P White; Xiaoyue Wang
Journal:  Genome Biol       Date:  2017-10-23       Impact factor: 13.583

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  8 in total

1.  Transcriptional control by enhancers: working remotely for improved performance.

Authors:  Joaquin M Espinosa
Journal:  Transcription       Date:  2020-02

Review 2.  Epigenetic Research in Stem Cell Bioengineering-Anti-Cancer Therapy, Regenerative and Reconstructive Medicine in Human Clinical Trials.

Authors:  Claudia Dompe; Krzysztof Janowicz; Greg Hutchings; Lisa Moncrieff; Maurycy Jankowski; Mariusz J Nawrocki; Małgorzata Józkowiak; Paul Mozdziak; Jim Petitte; Jamil A Shibli; Marta Dyszkiewicz-Konwińska; Małgorzata Bruska; Hanna Piotrowska-Kempisty; Bartosz Kempisty; Michał Nowicki
Journal:  Cancers (Basel)       Date:  2020-04-21       Impact factor: 6.639

3.  MLL3 suppresses tumorigenesis through regulating TNS3 enhancer activity.

Authors:  Jun-Yi Zheng; Chen-Yu Wang; Chuan Gao; Qiong Xiao; Cheng-Wei Huang; Min Wu; Lian-Yun Li
Journal:  Cell Death Dis       Date:  2021-04-06       Impact factor: 8.469

4.  Genome-wide profiling in colorectal cancer identifies PHF19 and TBC1D16 as oncogenic super enhancers.

Authors:  Qing-Lan Li; Xiang Lin; Ya-Li Yu; Lin Chen; Qi-Xin Hu; Meng Chen; Nan Cao; Chen Zhao; Chen-Yu Wang; Cheng-Wei Huang; Lian-Yun Li; Mei Ye; Min Wu
Journal:  Nat Commun       Date:  2021-11-04       Impact factor: 14.919

5.  The Non-Specific Lethal (NSL) Histone Acetyltransferase Complex Transcriptionally Regulates Yin Yang 1-Mediated Cell Proliferation in Human Cells.

Authors:  Hongsen Liu; Tao Wei; Lin Sun; Tingting Wu; Fuqiang Li; Jianlei Zhao; Jinmeng Chu; Fei Wang; Yong Cai; Jingji Jin
Journal:  Int J Mol Sci       Date:  2022-03-30       Impact factor: 6.208

6.  Dynamic Chromatin States Coupling with Key Transcription Factors in Colitis-Associated Colorectal Cancer.

Authors:  Lin Chen; Zhihui Luo; Chen Zhao; Qinglan Li; Yingjie Geng; Yong Xiao; Ming-Kai Chen; Lianyun Li; Zhen-Xia Chen; Min Wu
Journal:  Adv Sci (Weinh)       Date:  2022-06-16       Impact factor: 17.521

Review 7.  Epigenetic Memories in Hematopoietic Stem and Progenitor Cells.

Authors:  Kazumasa Aoyama; Naoki Itokawa; Motohiko Oshima; Atsushi Iwama
Journal:  Cells       Date:  2022-07-13       Impact factor: 7.666

8.  Regulation of KDM5C stability and enhancer reprogramming in breast cancer.

Authors:  Qiong Xiao; Chen-Yu Wang; Chuan Gao; Ji-Dong Chen; Jing-Jing Chen; Zhen Wang; Lin-Gao Ju; Shan-Bo Tang; Jie Yao; Feng Li; Lian-Yun Li; Min Wu
Journal:  Cell Death Dis       Date:  2022-10-03       Impact factor: 9.685

  8 in total

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