Literature DB >> 29283311

snoRNAs associate with mRNA 3' processing complex: New wine in old bottles.

Junjie Shi1, Chunliu Huang1, Shanshan Huang1, Chengguo Yao1,2.   

Abstract

3' end processing is required for the maturation of all eukaryotic RNAs. Current model suggests that canonical mRNA 3' processing is carried out exclusively within a protein complex termed mRNA 3' processing complex. In a recent study, by using RNA-biotin based pull-down assay and high-throughput sequencing, we reported that a subset of small nucleolar RNAs (snoRNAs) were physically associated with this macromolecular machinery. Through detailed characterization of one of these snoRNAs, SNORD50A, we revealed that non-coding RNA, such as snoRNA, may play a regulatory role in mRNA 3' processing. Our results provided novel insight into both the regulatory mechanism of mRNA 3' processing and the non-canonical functions of snoRNAs.

Entities:  

Keywords:  cleavage; mRNA 3′ processing; polyadenylation; snoRNA

Mesh：

Substances：

Year:  2017        PMID： 29283311      PMCID： PMC5798957          DOI： 10.1080/15476286.2017.1416278

Source DB:  PubMed          Journal:  RNA Biol        ISSN： 1547-6286            Impact factor:   4.652


  29 in total

1.  Molecular architecture of the human pre-mRNA 3' processing complex.

Authors:  Yongsheng Shi; Dafne Campigli Di Giammartino; Derek Taylor; Ali Sarkeshik; William J Rice; John R Yates; Joachim Frank; James L Manley
Journal:  Mol Cell       Date:  2009-02-13       Impact factor: 17.970

2.  Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing.

Authors:  Qin Yang; Gregory M Gilmartin; Sylvie Doublié
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

Review 3.  C/D-box snoRNAs form methylating and non-methylating ribonucleoprotein complexes: Old dogs show new tricks.

Authors:  Marina Falaleeva; Justin R Welden; Marilyn J Duncan; Stefan Stamm
Journal:  Bioessays       Date:  2017-05-15       Impact factor: 4.345

Review 4.  The many faces of small nucleolar RNAs.

Authors:  Tomaž Bratkovič; Boris Rogelj
Journal:  Biochim Biophys Acta       Date:  2014-04-13

Review 5.  Birth and Death of Histone mRNAs.

Authors:  William F Marzluff; Kaitlin P Koreski
Journal:  Trends Genet       Date:  2017-08-31       Impact factor: 11.639

6.  The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are recurrently deleted in human cancer.

Authors:  Zurab Siprashvili; Dan E Webster; Danielle Johnston; Rajani M Shenoy; Alexander J Ungewickell; Aparna Bhaduri; Ross Flockhart; Brian J Zarnegar; Yonglu Che; Francesca Meschi; Joseph D Puglisi; Paul A Khavari
Journal:  Nat Genet       Date:  2015-11-23       Impact factor: 38.330

7.  Efficient and specific knockdown of small non-coding RNAs in mammalian cells and in mice.

Authors:  Xue-hai Liang; Timothy A Vickers; Shuling Guo; Stanley T Crooke
Journal:  Nucleic Acids Res       Date:  2010-11-09       Impact factor: 16.971

8.  A large-scale analysis of mRNA polyadenylation of human and mouse genes.

Authors:  Bin Tian; Jun Hu; Haibo Zhang; Carol S Lutz
Journal:  Nucleic Acids Res       Date:  2005-01-12       Impact factor: 16.971

Review 9.  The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site.

Authors:  Yongsheng Shi; James L Manley
Journal:  Genes Dev       Date:  2015-05-01       Impact factor: 11.361

10.  CPSF30 and Wdr33 directly bind to AAUAAA in mammalian mRNA 3' processing.

Authors:  Serena L Chan; Ina Huppertz; Chengguo Yao; Lingjie Weng; James J Moresco; John R Yates; Jernej Ule; James L Manley; Yongsheng Shi
Journal:  Genes Dev       Date:  2014-10-09       Impact factor: 11.361
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  7 in total

1.  Suboptimal RNA-RNA interaction limits U1 snRNP inhibition of canonical mRNA 3' processing.

Authors:  Junjie Shi; Yanhui Deng; Shanshan Huang; Chunliu Huang; Jinkai Wang; Andy Peng Xiang; Chengguo Yao
Journal:  RNA Biol       Date:  2019-07-07       Impact factor: 4.652

Review 2.  Dysregulation of Small Nucleolar RNAs in B-Cell Malignancies.

Authors:  Martijn W C Verbeek; Stefan J Erkeland; Vincent H J van der Velden
Journal:  Biomedicines       Date:  2022-05-24

Review 3.  Connections between 3' end processing and DNA damage response: Ten years later.

Authors:  Michael Robert Murphy; Frida Esther Kleiman
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-10-28       Impact factor: 9.957

Review 4.  C/D box snoRNAs in viral infections: RNA viruses use old dogs for new tricks.

Authors:  Stefan Stamm; J Stephen Lodmell
Journal:  Noncoding RNA Res       Date:  2019-02-14

Review 5.  The cellular landscape of mid-size noncoding RNA.

Authors:  Vincent Boivin; Laurence Faucher-Giguère; Michelle Scott; Sherif Abou-Elela
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-03-06       Impact factor: 9.957

6.  Fractional 2'-O-methylation in the ribosomal RNA of Dictyostelium discoideum supports ribosome heterogeneity in Amoebozoa.

Authors:  Jan Diesend; Ulf Birkedal; Jonas Kjellin; Jingwen Zhang; Kim Philipp Jablonski; Fredrik Söderbom; Henrik Nielsen; Christian Hammann
Journal:  Sci Rep       Date:  2022-02-04       Impact factor: 4.379

7.  Functional diversity of small nucleolar RNAs.

Authors:  Tomaž Bratkovič; Janja Božič; Boris Rogelj
Journal:  Nucleic Acids Res       Date:  2020-02-28       Impact factor: 16.971
  7 in total

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