| Literature DB >> 29263533 |
Abhishek De1, Subrata Roy2, Soumi Sukla2, Asad Ansari1, Subhajit Biswas2.
Abstract
BACKGROUND: The etiopathogenesis of Pityriasis rosea (PR), a papulo-squamous skin disease, remains elusive and hypothesized to be caused primarily by human herpesvirus (HHV) 6 or 7 or immune dysfunction. AIMS: The recent increasing incidences of hepatitis B virus (HBV) infections, including asymptomatic occult HBV infections (OBIs), in a densely populated city in India, prompted us to investigate whether PR patients (from varied socioeconomic and immune status) harbor the underlying HBV infections. These cases were also investigated for HHV 6 and 7 infections.Entities:
Keywords: HBsAg; Pityriasis rosea; human herpesvirus 7; occult hepatitis B virus infection; polymerase chain reaction
Year: 2017 PMID: 29263533 PMCID: PMC5724307 DOI: 10.4103/ijd.IJD_235_17
Source DB: PubMed Journal: Indian J Dermatol ISSN: 0019-5154 Impact factor: 1.494
Primers used in polymerase chain reactions and for DNA sequencing
Summary of serological and molecular analyses of blood samples
Figure 1(a) Representative gel electrophoresis on 1.5% agarose gels depicting hepatitis B virus S gene-specific polymerase chain reaction products and controls. Negative control with nuclease-free water used for sample polymerase chain reactions (NC1); negative control for primers SPL2 and SPL3, using fresh nuclease-free water (NC2); nested SPL4-5 polymerase chain reaction product with NC1 (NC3); SPL4-5 nested polymerase chain reaction product with NC2 (NC4). First-round polymerase chain reaction with SPL2-3 primers yielding no bands of expected length 1652 bp (bottom row of wells marked with sample names S8, S2, and so on). Second-round nested polymerase chain reaction with SPL4-5 primers yielding 1277 bp band (top row of wells) for hepatitis B virus-positive samples (S8, S13, and so on). M is the molecular weight marker. (b) Gel electrophoresis of polymerase chain reaction products on 1.5% agarose gel showing human herpesvirus 7-nested polymerase chain reaction products. Representative first-round polymerase chain reaction products (186 bp) using human herpesvirus 7-OF and human herpesvirus 7-OR primers are shown on the right hand gel and the test samples are marked as S’. NC1 is negative control for the first-round and NC2 for the second-round nested polymerase chain reactions (right gel). The second-round nested polymerase chain reaction products (124 bp) were generated from the 5-fold diluted first-round products using internal primers human herpesvirus 7 FN and human herpesvirus 7-FR and the test samples are marked as S. NC is negative control for the second-round nested polymerase chain reaction done on negative control of the first-round polymerase chain reaction (left gel). M is the same molecular weight marker as shown and labeled in Figure 1 (a).
Figure 2(a) Multiple sequence alignment of hepatitis B virus-positive Pityriasis rosea samples with other hepatitis B virus S protein sequences. The latter are derived from nt sequences identified by their GenBank accession numbers in the figure. Amino acid sequences pertaining to positions 58-226 were used for comparing with the test samples. The GenBank accession numbers have been mentioned against the respective samples in the first row of the alignment. (b) Multiple sequence alignment of the human herpes virus 7-positive Pityriasis rosea samples with closely related human herpes virus 7 UL10 gene (partial) sequences. The latter sequences were identified by BLAST search and shown with their GenBank accession numbers in the alignment. The numbering of the nt positions pertains to nt positions 15701-15774 as in human herpes virus 7 strain (accession number U43400)
Figure 3Phylogenetic grouping (based on hepatitis B virus S gene [partial]) of the hepatitis B virus sequences of the Pityriasis rosea occult hepatitis B virus infection samples relative to a collection of other hepatitis B virus isolates of genotype D. Hepatitis B virus sequences and their place of origin, retrieved from GenBank, are identified by their GenBank accession numbers in the figure. Numbers next to the branches of the phylogenetic tree represent the percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (2000 replicates). The scale bar indicates genetic distance in terms of nucleotide substitution/site/year