| Literature DB >> 20412171 |
H Scheiblauer1, M El-Nageh, S Diaz, S Nick, H Zeichhardt, H-P Grunert, A Prince.
Abstract
BACKGROUND AND OBJECTIVES: This study was conducted by the International Consortium for Blood Safety (ICBS) to identify high-quality test kits for detection of hepatitis B virus (HBV) surface antigen (HBsAg) for the benefit of developing countries.Entities:
Mesh:
Substances:
Year: 2009 PMID: 20412171 PMCID: PMC2860763 DOI: 10.1111/j.1423-0410.2009.01272.x
Source DB: PubMed Journal: Vox Sang ISSN: 0042-9007 Impact factor: 2.144
HBV genotypes and HBsAg subtypes in the ICBS HBsAg Clinical Panel and ICBS HBsAg Quantitative Panel
| ICBS HBsAg Clinical Panel | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Country of origin | ||||||||||
| HBV genotype | HBsAg subtype | Brazil | Egypt | Ivory Coast | Jordan | South Africa | Tunisia | USA | Vietnam | Total no. of samples |
| A | adw2 | 12 | 2 | 2 | 8 | 24 | ||||
| ayw1 | 5 | 1 | 6 | |||||||
| adw4 | 1 | 1 | ||||||||
| ayw2 | 1 | 1 | ||||||||
| B | adw2 | 1 | 10 | 2 | 13 | |||||
| ayw1 | 1 | 16 | 17 | |||||||
| C | adw2 | 1 | 1 | |||||||
| adr | 6 | 4 | 10 | |||||||
| D | ayw2 | 6 | 1 | 7 | 6 | 2 | 22 | |||
| ayw3 | 1 | 3 | 4 | |||||||
| ayw4 | 1 | 1 | ||||||||
| adw2 | 2 | 1 | 3 | |||||||
| E | ayw4 | 29 | 1 | 30 | ||||||
| F | adw4 | 12 | 1 | 13 | ||||||
| Total | 34 | 3 | 34 | 10 | 2 | 8 | 33 | 22 | 146 | |
| ICBS HBsAg Quantitative Panel | ||||||||||
| Sample ID | Country of origin | HBV genotype | HBV subtype | |||||||
| 220 | Jordan | A | adw2 | |||||||
| 546 | Vietnam | B | ayw1 | |||||||
| 570 | Vietnam | B | adw2 | |||||||
| 516 | Vietnam | C | adr | |||||||
| 93 | Tunisia | D | ayw2 | |||||||
| 318 | Brazil | D | ayw3 | |||||||
| 246 | Ivory Coast | E | ayw4 | |||||||
| 713 | Brazil (Manaus) | F | adw4 | |||||||
Amino acid alignment of the ‘a’ determinant of the S gene of the eight samples of the ICBS HBsAg Quantitative Panel
| 110 | 120 | 130 | 140 | ||||
|---|---|---|---|---|---|---|---|
| A/ | 100 | QGMLPVCPLI | PGSTTTSTGP | C | NSMFPSCCCT | KPTDGNCTCI | |
| A/ | #220 | 100 | ·········· | ·········· | ··········· | ··········· | |
| B/ | #546 | 100 | ·········· | ···S······ | · | T········· | ·········· |
| B/ | #570 | 100 | ·········· | ···S······ | ·········· | T········· | ·········· |
| C/ | #516 | 100 | ·········L | ··TS······ | ·····I···· | T········· | ·········· |
| D/ | #93 | 100 | ·········· | ···S······· | T··Y······ | ··S······· | |
| D/ | #318 | 100 | ·········· | ···S··· | T··Y······ | ··S······· | |
| E/ | #246 | 100 | ·········· | ···S······· | T········ | ··S······· | |
| F/ | #713 | 100 | ·········L | ··········· | T········ | ··S······· | |
| 160 | 170 | 180 | 190 | ||||
| A/ | 150 | PIPSSWAF | YLWEWASVRF | SWLSLLVPFV | QWFVGLSPTV | WLSAIWMMWY | |
| A/ | #220 | 150 | ·········· | ·········· | ·········· | ·········· | ·········· |
| B/ | #546 | 150 | ·········· | ·········· | ·········· | ·········· | ···V···I·· |
| B/ | #570 | 150 | ·········· | ·········· | ·········· | ·········· | ···V······ |
| C/ | #516 | 150 | ········· | F········· | ·········· | ·········· | ···V······ |
| D/ | #93 | 150 | ········ | F······A·· | ·········· | ·········· | ···V······ |
| D/ | #318 | 150 | ········G· | F······A·· | ·········· | ·········· | ···V······ |
| E/ | #246 | 150 | ·········· | ·········· | ·········· | ·········· | ·········· |
| F/ | #713 | 150 | ·······LG | ·······A·· | ·······Q·· | ··C······· | ··LV···I·· |
The dots represent the positions which are the same as the prototype A/adw sequence as referenced in [13]. Genotype and subtype specific residues according to references [14,15,18] are shown. Residues determining the genotype and subtype according to reference [19] are bold. D/ayw3 substitution at positions 118 and 128 are underlined. The amino acids shown are described with one letter abbreviation according to: IUPAC-IUB Joint Commission on Biochemical Nomenclature.
Fig. 1Analytical sensitivities of the 70 HBsAg test kits evaluated. aAnalytical Sensitivities for each assay are expressed as IU/ml relative to the 2nd HBsAg WHO international standard. bThe 70 HBsAg test kits were sorted according to their analytical sensitivity with the PEI HBsAg ad standard. cEach symbol in figure represents the detection limit of an HBsAg kits as shown in Table S2 in the electronic version of the article. dDetection limits > 2·3 IU/ml are shown as 2·5 IU/ml.
Fig. 2Sensitivity differences of the HBsAg EIAs for the various HBsAg genotypes A–F and subtypes adw2/4, adr and ayw1–4 in the ICBS HBsAg Quantitative Panel. aSensitivity reduction factors are expressed for each assay relative to the analytical sensitivity for genotype A subtype adw2 sample #220 in the same assay. The symbols in figure represent the sensitivity reduction factor of the different HBsAg EIA kits (n= 51). The values of figure refer to Table S2 in the electronic version of the article. The rapid tests were not included because they do not give continuous values.
Fig. 3Correlation of analytical sensitivity of HBsAg assays with the time needed for detection of HBsAg. aDay delay relative to the most sensitive HBsAg assay (0·02 IU/mL). bIU/mL relative to the 2nd WHO International HBsAg Standard (00/588). Geomean, geometric mean value of 32 seroconversion panels tested; min/max, the smallest and largest number in the set of values. For the values of figure refer to Table S3 in the electronic version of the article.
Relative sensitivity reduction in HBsAg assays with the problematic samples of the ICBS HBsAg Clinical Panel
| ICBS HBsAg Clinical Panel samples | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Sample ID | #1125 | #1135 | #1010 | #1039 | #1015 | ||||
| Genotype/subtype | B/adw2 | B/adw2 | D/ayw2 | E/ayw4 | D/ayw2 | ||||
| Mutation | M133L | P105R | T131I | Q101H | S143L | ||||
| HBsAg concentration (IU/ml) | 0·21 | 0·22 | 0·36 | 72 | >8000 | ||||
| Test format | Number of assays ( | Clinical sensitivity (%) | Analytical sensitivity (IU/ml) | Number of false neg. ( | Relative sensitivity reduction | ||||
| EIA | 18 | 100 | 0·02–0·13 | 0 | 0 | 0 | 0 | 0 | 500 to >1000 2/18 |
| EIA | 5 | 99·32–98·63 | 0·07–0·13 | 1–2 | 1–25 4/5 | 1–25 4/5 | 0 | 0 | 20 1/5 |
| EIA | 9 | 99·32–98·63 | 0·14–0·22 | 1–2 | 1–25 6/9 | 1–25 7/9 | 0 | 0 | 0 |
| EIA | 6 | 98·63–97·26 | 0·23–0·36 | 2–3 | BDL 4/6 | BDL 6/6 | 20 1/6 | 120 | 0 |
| EIA | 13 | 98·63–97·26 | 0·39–2·3 | 2–4 | BDL 12/13 | BDL 12/13 | BDL 11/13 | 13–120 2/13 | 0 |
| Rapid | 19 | 98·63–94·52 | 1·7–2·3 | 2–8 | BDL 19/19 | BDL 19/19 | BDL 18/19 | 2/19 | 4/19 |
Detailed data is available in Table S4 in the electronic version of this article.
Detection limit see Table S2.
Approximated relative factor in sensitivity reduction compared to ICBS A/adw2 (panel #220).
Number of assays reacting with sensitivity reduction out of total assays in the line.
BDL, below detection limit.
Amino acid alignment of the HBsAg mutant samples of the ICBS HBsAg Clinical Panel which caused reduced sensitivity in some HBsAg test kits
| 110 | 120 | 130 | 140 | 150 | |||
|---|---|---|---|---|---|---|---|
| A/ | QGMLPVCPLI | PGSTTTSTGP | CKTCTTPAQG | NSMFPSCCCT | KPTDGNCTCI | ||
| B/ | #1125 | 100 | ·········· | ·········· | ·········· | T· | ·········· |
| B/ | #1135 | 100 | ···· | ·········· | ·········· | T········· | ·········· |
| D/ | #1010 | 100 | ·········· | ···S······ | ·R········ | ··S······· | |
| D/ | #1015 | 100 | ·········· | ···S······ | ·R········ | T··Y······ | ·· |
| E/ | #1039 | 100 | · | ····S····· | ·R····L··· | T········S | ··S······· |
| 160 | 170 | ||||||
| A/ | PIPSSWAFAK | YLWEWASVRF | SWLS | ||||
| B/ | #1125 | 150 | ·········K | F········· | ···· | ||
| B/ | #1135 | 150 | ·········K | ·········· | ···· | ||
| D/ | #1010 | 150 | ········GK | F······A·· | ···· | ||
| D/ | #1015 | 150 | ·········K | F······A·· | ···· | ||
| E/ | #1039 | 150 | ········GK | F······A·· | ···· | ||
The dots represent the positions which are the same as the sequence in reference [13] but the variations specific for the respective genotypes according to reference [13] are shown. Mutations are shown in bold and underlined. The amino acids shown are described with one letter abbreviation according to: IUPAC-IUB Joint Commission on Biochemical Nomenclature.