Literature DB >> 29255284

Enterotypes in the landscape of gut microbial community composition.

Paul I Costea1, Falk Hildebrand1,2,3, Manimozhiyan Arumugam4, Fredrik Bäckhed5,6, Martin J Blaser7, Frederic D Bushman8, Willem M de Vos9,10, S Dusko Ehrlich11,12, Claire M Fraser13, Masahira Hattori14, Curtis Huttenhower15, Ian B Jeffery16, Dan Knights17,18, James D Lewis19, Ruth E Ley20, Howard Ochman21, Paul W O'Toole16, Christopher Quince22, David A Relman23,24,25, Fergus Shanahan16, Shinichi Sunagawa1,26, Jun Wang5,27,28,29,30, George M Weinstock31, Gary D Wu32, Georg Zeller1, Liping Zhao33, Jeroen Raes34,35,36, Rob Knight37,38,39,40, Peer Bork41,42,43.   

Abstract

Population stratification is a useful approach for a better understanding of complex biological problems in human health and wellbeing. The proposal that such stratification applies to the human gut microbiome, in the form of distinct community composition types termed enterotypes, has been met with both excitement and controversy. In view of accumulated data and re-analyses since the original work, we revisit the concept of enterotypes, discuss different methods of dividing up the landscape of possible microbiome configurations, and put these concepts into functional, ecological and medical contexts. As enterotypes are of use in describing the gut microbial community landscape and may become relevant in clinical practice, we aim to reconcile differing views and encourage a balanced application of the concept.

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Year:  2017        PMID: 29255284      PMCID: PMC5832044          DOI: 10.1038/s41564-017-0072-8

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN: 2058-5276            Impact factor:   17.745


  83 in total

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Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Two gut community enterotypes recur in diverse bumblebee species.

Authors:  Jilian Li; J Elijah Powell; Jun Guo; Jay D Evans; Jie Wu; Paul Williams; Qinhui Lin; Nancy A Moran; Zhigang Zhang
Journal:  Curr Biol       Date:  2015-08-03       Impact factor: 10.834

3.  Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits.

Authors:  Yuliaxis Ramayo-Caldas; Nuria Mach; Patricia Lepage; Florence Levenez; Catherine Denis; Gaetan Lemonnier; Jean-Jacques Leplat; Yvon Billon; Mustapha Berri; Jöel Doré; Claire Rogel-Gaillard; Jordi Estellé
Journal:  ISME J       Date:  2016-05-13       Impact factor: 10.302

4.  Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut.

Authors:  Henrik M Roager; Lea B S Hansen; Martin I Bahl; Henrik L Frandsen; Vera Carvalho; Rikke J Gøbel; Marlene D Dalgaard; Damian R Plichta; Morten H Sparholt; Henrik Vestergaard; Torben Hansen; Thomas Sicheritz-Pontén; H Bjørn Nielsen; Oluf Pedersen; Lotte Lauritzen; Mette Kristensen; Ramneek Gupta; Tine R Licht
Journal:  Nat Microbiol       Date:  2016-06-27       Impact factor: 17.745

5.  Dynamics and associations of microbial community types across the human body.

Authors:  Tao Ding; Patrick D Schloss
Journal:  Nature       Date:  2014-04-16       Impact factor: 49.962

6.  Linking long-term dietary patterns with gut microbial enterotypes.

Authors:  Gary D Wu; Jun Chen; Christian Hoffmann; Kyle Bittinger; Ying-Yu Chen; Sue A Keilbaugh; Meenakshi Bewtra; Dan Knights; William A Walters; Rob Knight; Rohini Sinha; Erin Gilroy; Kernika Gupta; Robert Baldassano; Lisa Nessel; Hongzhe Li; Frederic D Bushman; James D Lewis
Journal:  Science       Date:  2011-09-01       Impact factor: 47.728

7.  Potential of fecal microbiota for early-stage detection of colorectal cancer.

Authors:  Georg Zeller; Julien Tap; Anita Y Voigt; Shinichi Sunagawa; Jens Roat Kultima; Paul I Costea; Aurélien Amiot; Jürgen Böhm; Francesco Brunetti; Nina Habermann; Rajna Hercog; Moritz Koch; Alain Luciani; Daniel R Mende; Martin A Schneider; Petra Schrotz-King; Christophe Tournigand; Jeanne Tran Van Nhieu; Takuji Yamada; Jürgen Zimmermann; Vladimir Benes; Matthias Kloor; Cornelia M Ulrich; Magnus von Knebel Doeberitz; Iradj Sobhani; Peer Bork
Journal:  Mol Syst Biol       Date:  2014-11-28       Impact factor: 11.429

Review 8.  Association of all-cause mortality with overweight and obesity using standard body mass index categories: a systematic review and meta-analysis.

Authors:  Katherine M Flegal; Brian K Kit; Heather Orpana; Barry I Graubard
Journal:  JAMA       Date:  2013-01-02       Impact factor: 56.272

9.  Gut microbiomes of Malawian twin pairs discordant for kwashiorkor.

Authors:  Michelle I Smith; Tanya Yatsunenko; Mark J Manary; Indi Trehan; Rajhab Mkakosya; Jiye Cheng; Andrew L Kau; Stephen S Rich; Patrick Concannon; Josyf C Mychaleckyj; Jie Liu; Eric Houpt; Jia V Li; Elaine Holmes; Jeremy Nicholson; Dan Knights; Luke K Ursell; Rob Knight; Jeffrey I Gordon
Journal:  Science       Date:  2013-01-30       Impact factor: 47.728

10.  Revised Estimates for the Number of Human and Bacteria Cells in the Body.

Authors:  Ron Sender; Shai Fuchs; Ron Milo
Journal:  PLoS Biol       Date:  2016-08-19       Impact factor: 8.029

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  235 in total

1.  An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men.

Authors:  Abigail J S Armstrong; Michael Shaffer; Nichole M Nusbacher; Christine Griesmer; Suzanne Fiorillo; Jennifer M Schneider; C Preston Neff; Sam X Li; Andrew P Fontenot; Thomas Campbell; Brent E Palmer; Catherine A Lozupone
Journal:  Microbiome       Date:  2018-11-05       Impact factor: 14.650

2.  Intestinal Microbiota Is Altered in Patients with Gastric Cancer from Shanxi Province, China.

Authors:  Yu-Feng Qi; Jun-Ning Sun; Lai-Feng Ren; Xue-Ling Cao; Jian-Hong Dong; Kai Tao; Xue-Mei Guan; Ya-Ni Cui; Wen Su
Journal:  Dig Dis Sci       Date:  2018-12-07       Impact factor: 3.199

3.  Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome.

Authors:  Malte Christoph Rühlemann; Britt Marie Hermes; Corinna Bang; Shauni Doms; Lucas Moitinho-Silva; Louise Bruun Thingholm; Fabian Frost; Frauke Degenhardt; Michael Wittig; Jan Kässens; Frank Ulrich Weiss; Annette Peters; Klaus Neuhaus; Uwe Völker; Henry Völzke; Georg Homuth; Stefan Weiss; Harald Grallert; Matthias Laudes; Wolfgang Lieb; Dirk Haller; Markus M Lerch; John F Baines; Andre Franke
Journal:  Nat Genet       Date:  2021-01-18       Impact factor: 38.330

4.  Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species.

Authors:  Arnaud Belcour; Clémence Frioux; Méziane Aite; Anthony Bretaudeau; Falk Hildebrand; Anne Siegel
Journal:  Elife       Date:  2020-12-29       Impact factor: 8.140

5.  Profiling of Endogenous and Gut Microbial Metabolites to Indicate Metabotype-Specific Dietary Responses: A Systematic Review.

Authors:  Stefania Noerman; Marjukka Kolehmainen; Kati Hanhineva
Journal:  Adv Nutr       Date:  2020-09-01       Impact factor: 8.701

6.  Microbiota as Predictor of Mortality in Allogeneic Hematopoietic-Cell Transplantation.

Authors:  Jonathan U Peled; Antonio L C Gomes; Sean M Devlin; Eric R Littmann; Ying Taur; Anthony D Sung; Daniela Weber; Daigo Hashimoto; Ann E Slingerland; John B Slingerland; Molly Maloy; Annelie G Clurman; Christoph K Stein-Thoeringer; Kate A Markey; Melissa D Docampo; Marina Burgos da Silva; Niloufer Khan; André Gessner; Julia A Messina; Kristi Romero; Meagan V Lew; Amy Bush; Lauren Bohannon; Daniel G Brereton; Emily Fontana; Luigi A Amoretti; Roberta J Wright; Gabriel K Armijo; Yusuke Shono; Míriam Sanchez-Escamilla; Nerea Castillo Flores; Ana Alarcon Tomas; Richard J Lin; Lucrecia Yáñez San Segundo; Gunjan L Shah; Christina Cho; Michael Scordo; Ioannis Politikos; Kasumi Hayasaka; Yuta Hasegawa; Boglarka Gyurkocza; Doris M Ponce; Juliet N Barker; Miguel-Angel Perales; Sergio A Giralt; Robert R Jenq; Takanori Teshima; Nelson J Chao; Ernst Holler; Joao B Xavier; Eric G Pamer; Marcel R M van den Brink
Journal:  N Engl J Med       Date:  2020-02-27       Impact factor: 91.245

7.  Effects of digested Cheonggukjang on human microbiota assessed by in vitro fecal fermentation.

Authors:  Vineet Singh; Nakwon Hwang; Gwangpyo Ko; Unno Tatsuya
Journal:  J Microbiol       Date:  2021-02-01       Impact factor: 3.422

8.  Statin drugs might boost healthy gut microbes.

Authors:  Peter Libby
Journal:  Nature       Date:  2020-05       Impact factor: 49.962

Review 9.  Conserved and variable responses of the gut microbiome to resistant starch type 2.

Authors:  Zachary A Bendiks; Knud E B Knudsen; Michael J Keenan; Maria L Marco
Journal:  Nutr Res       Date:  2020-02-22       Impact factor: 3.315

Review 10.  Prevotella diversity, niches and interactions with the human host.

Authors:  Adrian Tett; Edoardo Pasolli; Giulia Masetti; Danilo Ercolini; Nicola Segata
Journal:  Nat Rev Microbiol       Date:  2021-05-28       Impact factor: 60.633

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