Literature DB >> 29250418

Crystal structure of 3,6,6-trimethyl-4-oxo-1-(pyridin-2-yl)-4,5,6,7-tetra-hydro-1H-indazol-7-aminium chloride and its monohydrate.

Anatoly Mishnev1, Alvis Mengots2, Māris Turks2.   

Abstract

The title compounds, C15H19N4O+·Cl- and C15H19N4O+·Cl-·H2O, obtained in attempts to synthesize metal complexes using tetra-hydro-indazole as a ligand, were characterized by NMR, IR and X-ray diffraction techniques. The partially saturated ring in the tetra-hydro-indazole core adopts a sofa conformation. An intra-molecular N-H⋯N hydrogen bond formed by the protonated amino group and the N atom of the pyridyl substituent is found in the first structure. In the hydro-chloride, the organic moieties are linked by two N-H⋯Cl- hydrogen bonds, forming a C(4) graph-set. In the hydrate crystal, a Cl- anion and a water mol-ecule assemble the moieties into infinite bands showing hydrogen-bond patterns with graph sets C(6), R64(12) and R42(8). Organic moieties form π-π stacked supra-molecular structures running along the b axis in both structures.

Entities:  

Keywords:  crystal structure; hydrate; hydro­chloride; tetra­hydro­indazole; tetra­hydro­indazolone

Year:  2017        PMID: 29250418      PMCID: PMC5730255          DOI: 10.1107/S205698901701667X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Tetra­hydro­indazoles can be regarded as annulated pyrazole analogs (Ansari et al., 2017 ▸) or as partially saturated indazoles (Gaikwad et al., 2015 ▸). In either of these categories they play an important role in medicinal chemistry. Tetra­hydro­indazoles are reported to be peripherally selective cannabinoid-1 receptor inverse agonists (Matthews et al., 2016 ▸), sigma-2 receptor ligands(Wu et al., 2015 ▸), and inter­leukin-2 inducible T-cell kinase inhibitors (Burch et al., 2015 ▸; Heifetz et al., 2016 ▸). Heterocyclic compounds containing a tetra­hydro­indazole core have been researched as anti­viral agents (Bassyouni et al., 2016 ▸) and compounds with anti­oxidant properties (Polo et al., 2016 ▸). With appropriate side-chain decorations, they also possess COX-2 inhibitory activity (Abdel-Rahman et al., 2012 ▸) and can inhibit bacterial type II topoisomerases (Wiener et al., 2007 ▸). The latter has led to the development of compounds with both anti­tumor and anti­microbial activity (Faidallah et al., 2013 ▸), including novel anti­tuberculosis agents (Guo et al., 2010 ▸). The broad application spectrum of tetra­hydro­indazoles has led to the development of synthetic methodologies. Thus, traditional approaches using a combination of either α,β-unsaturated ketones (Nakhai & Bergman, 2009 ▸) or dicarbonyl compounds (Murugavel et al., 2010 ▸), or tricarbonyl compounds (Kim et al., 2010 ▸; Scala et al., 2015 ▸) with hydrazines have been significantly updated and improved. In addition, the microwave-assisted synthesis of tetra­hydro­indazoles has been reported (Silva et al., 2006 ▸; Polo et al., 2016 ▸). It is inter­esting to note that compounds possessing free NH-functionality in the pyrazole ring have been studied thoroughly for their tautomeric equilibria (Claramunt et al., 2006 ▸). Additionally, tetra­hydro­indazolones substituted with 2-amino­benzamides have been studied as fluorescent probes (Jia et al., 2012 ▸). Other studies on side-chain modifications include the synthesis of polyfluoro­alkyl-substituted analogs (Khlebnikova et al., 2012 ▸), triazole-functionalized tetra­hydro­indazolones (Strakova et al., 2009 ▸) and their conjugation with biologically active natural products such as lupane triterpenoids (Khlebnicova et al., 2017 ▸). Among other synthetic approaches, the Ritter reaction provides a fast entry into structural modifications and is applicable to obtain a combinatorial library of compounds (Turks et al., 2012 ▸). Combinatorial chemistry methodology has been reported for the construction of tetra­hydro­indazolones in enanti­omerically pure pairs (Song et al., 2012 ▸). Also, enanti­omerically pure 7-amino-tetra­hydro­indazolones (Strakova et al., 2011 ▸) have been obtained. For these reasons, we were inter­ested in the synthesis of 7-amino-3,6,6-trimethyl-1-(pyridin-2-yl)-1,5,6,7-tetra­hydro-4H-indazol-4-one for use as a starting material for further structural modifications. Herein, the structures of the corresponding hydro­chloride 1 and its hydrate 2 are reported.

Structural commentary

Figs. 1 ▸ and 2 ▸ show the asymmetric units of the hydro­chloride (1) and its hydrate (2) with the symmetry-independent hydrogen bonds. The geometry and conformation of the organic cation in compounds 1 and 2 are substanti­ally similar. The pyrazole ring is planar within an r.m.s. deviation of the fitted atoms of 0.0059 Å in 1 and 0.0092 Å in 2. In both structures, the partially saturated ring adopts a sofa conformation. The distance of atom C6 from the mean plane formed by atoms C3–C5/C7/C8 (r.m.s. deviation of fitted atoms = 0.0495 Å in 1 and 0.0558 Å in 2) is 0.639 (2) Å in 1 and 0.642 (2) Å in 2. The dihedral angle between the latter plane and pyrazole ring is 5.79 (6)° in 1 and 6.48 (4)° in 2. On the other hand, the dihedral angle between the pyrazole ring and its pyridyl substituent is 11.91 (6)° [torsion angle N4—N3—C11—C12 = 10.7 (2)°] in 1 and 7.22 (5)° [torsion angle N4—N3—C11—C12 = 4.6 (2)°] in 2. An intra­molecular N—H⋯N hydrogen bond formed by the protonated amino group and nitro­gen atom of pyridyl substituent is found in 1 (Table 1 ▸).
Figure 1

ORTEP view of the asymmetric unit of 1 showing the atom-numbering scheme and 50% probability displacement ellipsoids. The intra­molecular hydrogen bond is shown with dashed lines.

Figure 2

ORTEP view of the asymmetric unit of 2 showing the atom-numbering scheme and 50% probability displacement ellipsoids. The intra­molecular hydrogen bonds are shown with dashed lines.

Table 1

Hydrogen-bond geometry (Å, °) for (1)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯N20.97 (2)2.42 (2)2.928 (2)112 (2)
N1—H2N1⋯Cl1i 0.97 (2)2.08 (2)3.034 (2)168 (2)
N1—H3N1⋯Cl1ii 0.93 (2)2.27 (2)3.188 (2)167 (2)

Symmetry codes: (i) ; (ii) .

Supra­molecular features

In the crystal of compound 1, the organic moieties are linked by two types of N—H⋯Cl− hydrogen bonds into infinite chains along the b-axis direction (Table 1 ▸). According to Etter (1990 ▸), the hydrogen-bond pattern in 1 can be described by a C(4) graph set. The packing of 1 is shown in Fig. 3 ▸. In the structure of 2, in addition to participating in an intra­molecular hydrogen bond, the protonated amino group also forms two inter­molecular hydrogen bonds with the Cl− anion and a water mol­ecule (Table 2 ▸). Each Cl− anion and water mol­ecule takes part in three inter­molecular hydrogen bonds. The organic cations are bridged by a pair of Cl− anions and a water mol­ecule, thus assembling the moieties into infinite bands running along the b-axis direction. The hydrogen-bond pattern can be described by graph sets C(6), (12) and (8). The packing of 2 is shown in Fig. 4 ▸.
Figure 3

The crystal packing of compound 1, viewed along the a axis. The hydrogen bonds are shown as dashed lines (see Table 1 ▸).

Table 2

Hydrogen-bond geometry (Å, °) for (2)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1W⋯Cl1i 0.80 (3)2.39 (3)3.185 (2)176 (3)
O1W—H2W⋯Cl10.94 (3)2.31 (3)3.247 (2)179 (2)
N1—H1N1⋯Cl1ii 0.85 (2)2.40 (2)3.228 (2)165 (2)
N1—H3N1⋯O1W 0.95 (2)1.85 (3)2.775 (2)162 (2)

Symmetry codes: (i) ; (ii) .

Figure 4

The crystal packing of compound 2, viewed along the c axis. The hydrogen bonds are shown as dashed lines (see Table 2 ▸).

In the crystal of 1, the organic moieties form stacks running along the b axis which are stabilized by π–π inter­actions (Fig. 5 ▸). The distance between the centroids of the pyridine and pyrazole rings of adjacent mol­ecules is 3.585 (2) Å. The shortest contact is 3.239 (2) Å between atoms N2 and N4 of two inversion-related mol­ecules (Fig. 5 ▸). In the crystal of 2, the organic moieties also form π–π-stacked supra­molecular structures running along the b-axis direction (Fig. 6 ▸). The distance between the centroids of the pyridine rings of adjacent mol­ecules is 3.748 (2) Å. The shortest contact is 3.170 (2) Å between the N3 atoms of two inversion-related mol­ecules (Fig. 6 ▸).
Figure 5

View of stacks of organic moieties in the crystal structure of 1. H atoms and chloride anions are not shown for clarity.

Figure 6

View of stacks of organic moieties in the crystal structure of 2. H atoms, chloride anions and water mol­ecules are not shown for clarity.

Database survey

A search of the Cambridge Structural Database (Version 5.38; Groom et al., 2016 ▸) for the 3,6,6-trimethyl-4-oxo-4,5,6,7-tetra­hydro-1H-indazole core revealed five structurally close compounds: UXAQUG, UXARAN, UXARER, UXARIV, UXAROB (Strakova et al., 2011 ▸). These compounds differ from compounds 1 and 2 by the substituents at the positions of atoms N3 and C5. In all examples, the partially saturated ring in the indazole fragment adopts a sofa conformation. However, the phenyl ring at the position N3 forms much larger dihedral angles with the pyrazole ring than with the pyridyl substituent in the structures reported here.

Synthesis and crystallization

The synthesis of the title compounds is depicted in the reaction scheme below. The 7-amino­tetra­hydro­indazolone derivative 4 was prepared by an analogy of the procedure published by Strakova et al. (2011 ▸) from the known precursor 3 (Strakova et al., 2009 ▸). In our attempts to synthesize metal complexes with ligand 4, we obtained the hydro­chloride salt 1 in its anhydrous form. It can be explained by the acidity of cobalt chloride hexa­hydrate, which was used in the selected experiment. This prompted us to develop a preparative synthesis of the hydro­chloride salt. This was achieved by the formation and precipitation of crude hydro­chloride in ethyl acetate solution. Its crystallization from water provided the hydro­chloride hydrate 2. 7-Amino-3,6,6-trimethyl-1-(pyridin-2-yl)-1,5,6,7-tetra­hydro-4 -indazol-4-one (4): Gaseous H2 was bubbled for 10 min. through a solution/suspension of compound 3 (0.80 g, 2.7 mmol) and 10% Pd/C (80 mg) in a mixture of EtOH (10 mL) and THF (2 mL). The resulting reaction mixture was stirred under an H2 atmosphere at standard temperature and pressure for 3 h (TLC control). The catalyst was filtered through a celite pad and the filtrate was evaporated to dryness. The resulting amorphous solid was dried under reduced pressure to yield amine 4 (0.71 g, 97%) as a colorless powder. M.p. 390–392 K; R f = 0.14 (Hex:EtOAc:Et3N = 8:1:0.5). IR (KBr), υ (cm−1): 3360, 3295, 3055, 2985, 2955, 2945, 2930, 2890, 2865, 1670, 1590, 1575, 1540, 1465, 1455, 1285, 1250, 1145, 1085, 1075, 1035, 995. 1H NMR (CDCl3, 300 MHz) δ (ppm): 8.48 [m, 1H, H-C(Py)], 7.99 [d, J = 8.3 Hz, 1H, H-C(Py)], 7.87 [m, 1H, H-C(Py)], 7.26 [m, 1H, H-C(Py)], 4.27 (s, 1H, H-C7), 2.82 (d, J = 16.8 Hz, 1H, Ha-C5), 2.54 (s, 3H, H3C-C3), 2.18 (d, J = 16.8 Hz, 1H, Hb-C5), 2.08 (bs, 2H, H2N-C7) 1.26, 1.02 (2s, 6H, H3C-C6).13C NMR (75.5 MHz, CDCl3), δ (ppm): 194.1, 153.9, 152.4, 150.4, 148.0, 139.1, 122.1, 116.5, 115.9, 53.8, 47.8, 38.4, 27.3, 26.6, 13.7. Analysis calculated: (C15H18N4O) C, 66.64; H, 6.71; N, 20.73. Found: C, 66.56; H, 6.68; N, 20.74. 3,6,6-Trimethyl-4-oxo-1-(pyridin-2-yl)-4,5,6,7-tetra­hydro-1 -indazol-7-aminium n class="Chemical">chloride (1): A solution of CoCl2·6H2O (24 mg, 0.1 mmol) in ethanol (2 mL) was added to a solution of amine 4 (27 mg, 0.1 mmol) in ethanol (2 mL). The resulting reaction mixture was maturated at ambient temperature for 24 h. Then a part of it (1.2 mL) was transferred into an NMR tube and Et2O (0.8 mL) was added carefully on the top of the ethanol solution. After two days, colorless crystals of 1 were collected form the wall of the NMR tube. The product was characterized spectroscopically in its hydrate form (see below). 3,6,6-Trimethyl-4-oxo-1-(pyridin-2-yl)-4,5,6,7-tetra­hydro-1 -indazol-7-aminium chloride hydrate (2): A solution of HCl in EtOAc (0.5 M, 1.48 mL, 0.74 mmol, 1.0 equiv.) was added to a solution of amine 4 (0.20 g, 0.74 mmol, 1.0 equiv.) in EtOAc (2 mL) at ambient temperature. The resulting precipitate was filtered and washed on the filter with DCM. The the crude product was crystallized from water to obtain colorless crystals of 2 (195 mg, 81%) suitable for X-ray analysis. M.p. 543 K (decomp.); IR (KBr), υ (cm−1): 3430 (br.s), 3145, 3100, 3035, 2965, 2880, 2750, 2575, 1955 (br.s), 1685, 1600, 1545, 1520, 1490, 1465, 1450, 1400, 1375, 1360, 1295, 1245, 1140, 1045, 1000, 955. 1H NMR (300MHz, D2O), δ (ppm): δ 8.55 [m, 1H, H-C(Py)], 8.12 [m,1H,H-C (Py)], 7.90 [d, J = 8.3 Hz, 1H, H-C(Py)], 7.53 [m, 1H, H-C(Py)], 4.84 (s, 1H, H-C7), 3.00 (d, J =17.8 Hz, 1H, Ha-C5), 2.54 (s, 3H, H3C-C3), 2.45 (d, J = 17.8Hz,1H,Hb-C5), 1.36, 1.10 (2s, 6H, H3C-C6). 13C NMR (75.5 MHz, DMSO-d 6), δ (ppm):192.3, 151.4, 149.0, 148.0, 144.4, 140.1, 122.8, 118.0, 114.6, 51.4, 47.1, 37.2, 26.8, 25.4, 13.2. Analysis calculated: (C15H18N4O·HCl·H2O) C, 55.47; H, 6.52; N, 17.25. Found: C, 55.78; H,6.40; N, 17.29.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. Hydrogen atoms bonded to heteroatoms were refined isotropically. Other H atoms were included in the refinement at geometrically calculated positions with C—H = 0.95–0.99Å and treated as riding with U iso(H) = 1.2U eq(C) or 1.5U eq(C-methyl).
Table 3

Experimental details

 (1)(2)
Crystal data
Chemical formulaC15H19N4O+·Cl C15H19N4O+·Cl·H2O
M r 306.79324.81
Crystal system, space groupMonoclinic, P21/c Monoclinic, P21/c
Temperature (K)190190
a, b, c (Å)13.5411 (4), 7.7421 (2), 19.2457 (5)10.1855 (2), 7.4951 (2), 20.7961 (4)
β (°)130.493 (2)100.545 (1)
V3)1534.39 (8)1560.79 (6)
Z 44
Radiation typeMo KαMo Kα
μ (mm−1)0.250.26
Crystal size (mm)0.38 × 0.32 × 0.150.42 × 0.25 × 0.14
 
Data collection
DiffractometerNonius KappaCCDNonius KappaCCD
No. of measured, independent and observed [I > 2σ(I)] reflections5860, 3486, 27155549, 3552, 2874
R int 0.0270.023
(sin θ/λ)max−1)0.6490.654
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.043, 0.101, 1.030.039, 0.102, 1.06
No. of reflections34863552
No. of parameters205222
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.29, −0.250.29, −0.28

Computer programs: COLLECT (Bruker, 2004 ▸), SCALEPACK (Otwinowski & Minor, 1997 ▸), DENZO (Otwinowski & Minor, 1997 ▸), SIR2004 (Burla et al., 2005 ▸), SHELXL2017 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) 1, 2, global. DOI: 10.1107/S205698901701667X/eb2002sup1.cif Structure factors: contains datablock(s) 1. DOI: 10.1107/S205698901701667X/eb20021sup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901701667X/eb20021sup4.mol Structure factors: contains datablock(s) 2. DOI: 10.1107/S205698901701667X/eb20022sup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901701667X/eb20022sup5.mol Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901701667X/eb20021sup6.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901701667X/eb20022sup7.cml CCDC references: 1586488, 1586487 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H19N4O+·ClF(000) = 648
Mr = 306.79Dx = 1.328 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 13.5411 (4) ÅCell parameters from 6801 reflections
b = 7.7421 (2) Åθ = 1.0–27.5°
c = 19.2457 (5) ŵ = 0.25 mm1
β = 130.493 (2)°T = 190 K
V = 1534.39 (8) Å3Block, colourless
Z = 40.38 × 0.32 × 0.15 mm
Nonius KappaCCD diffractometerRint = 0.027
Radiation source: fine-focus sealed tubeθmax = 27.5°, θmin = 3.0°
CCD scansh = −17→17
5860 measured reflectionsk = −10→9
3486 independent reflectionsl = −24→24
2715 reflections with I > 2σ(I)
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.101w = 1/[σ2(Fo2) + (0.0363P)2 + 0.7495P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
3486 reflectionsΔρmax = 0.29 e Å3
205 parametersΔρmin = −0.25 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Cl10.63264 (4)0.65297 (6)0.33536 (3)0.03342 (14)
O10.98736 (12)−0.08281 (19)0.66919 (8)0.0361 (3)
N30.59725 (12)0.17416 (17)0.53425 (8)0.0187 (3)
N40.65309 (13)0.13670 (18)0.62325 (9)0.0219 (3)
C40.67526 (15)0.1258 (2)0.51633 (10)0.0193 (3)
N20.41873 (13)0.26763 (19)0.38981 (9)0.0230 (3)
C120.42625 (16)0.3337 (2)0.51532 (11)0.0232 (4)
H120.4711480.3277240.5776880.028*
C110.47588 (15)0.2621 (2)0.47773 (10)0.0190 (3)
N10.55052 (14)0.0192 (2)0.35950 (9)0.0220 (3)
C130.30686 (17)0.4145 (2)0.45593 (12)0.0282 (4)
H130.2678810.4604080.4776040.034*
C30.78494 (15)0.0540 (2)0.59559 (10)0.0211 (3)
C60.78026 (16)0.1295 (2)0.44709 (11)0.0246 (4)
C150.30553 (16)0.3529 (2)0.33478 (12)0.0276 (4)
H150.2650920.3627410.2732820.033*
C80.88681 (16)−0.0231 (2)0.59948 (11)0.0244 (4)
C50.65109 (15)0.1485 (2)0.42887 (10)0.0207 (3)
H50.6168670.2650080.4054130.025*
C20.76718 (16)0.0664 (2)0.66070 (11)0.0224 (4)
C100.75046 (18)0.1108 (3)0.35558 (12)0.0325 (4)
H10A0.8301390.1134480.3661040.049*
H10B0.6956860.2042480.3158640.049*
H10C0.7069600.0029850.3276130.049*
C140.24569 (17)0.4268 (2)0.36430 (13)0.0297 (4)
H140.1664190.4832510.3236400.036*
C70.85647 (16)−0.0288 (2)0.50865 (11)0.0253 (4)
H7A0.806434−0.1322170.4761130.030*
H7B0.937384−0.0373100.5200350.030*
C10.85803 (17)0.0141 (3)0.75907 (11)0.0312 (4)
H1A0.809647−0.0058460.7788440.047*
H1B0.9201740.1045420.7952000.047*
H1C0.902572−0.0898060.7663260.047*
C90.86206 (17)0.2931 (2)0.49510 (13)0.0301 (4)
H9A0.8152520.3914770.4565700.045*
H9B0.9424940.2819650.5070270.045*
H9C0.8796170.3081000.5517340.045*
H1N10.487 (2)0.000 (3)0.3670 (14)0.046 (6)*
H2N10.503 (2)0.062 (3)0.2980 (16)0.054 (7)*
H3N10.584 (2)−0.088 (3)0.3627 (14)0.042 (6)*
U11U22U33U12U13U23
Cl10.0363 (3)0.0353 (3)0.0225 (2)0.0052 (2)0.01632 (19)−0.00482 (19)
O10.0235 (7)0.0442 (8)0.0281 (6)0.0113 (6)0.0113 (6)0.0038 (6)
N30.0190 (7)0.0211 (7)0.0168 (6)0.0005 (6)0.0119 (5)0.0004 (6)
N40.0244 (7)0.0234 (7)0.0184 (6)−0.0002 (6)0.0141 (6)0.0012 (6)
C40.0189 (8)0.0186 (8)0.0210 (7)−0.0011 (6)0.0132 (7)−0.0020 (7)
N20.0207 (7)0.0263 (7)0.0216 (7)0.0011 (6)0.0136 (6)0.0027 (6)
C120.0272 (9)0.0200 (8)0.0268 (8)0.0003 (7)0.0195 (7)0.0005 (7)
C110.0189 (8)0.0157 (8)0.0232 (8)−0.0015 (6)0.0140 (7)−0.0004 (7)
N10.0204 (7)0.0266 (8)0.0191 (7)0.0023 (6)0.0129 (6)−0.0013 (6)
C130.0299 (9)0.0235 (9)0.0400 (10)0.0021 (8)0.0267 (8)−0.0010 (8)
C30.0187 (8)0.0209 (8)0.0194 (7)−0.0011 (7)0.0105 (6)−0.0019 (7)
C60.0218 (8)0.0297 (9)0.0264 (8)0.0031 (7)0.0176 (7)0.0007 (8)
C150.0230 (8)0.0299 (9)0.0252 (8)0.0022 (8)0.0136 (7)0.0063 (8)
C80.0203 (8)0.0213 (8)0.0254 (8)−0.0005 (7)0.0122 (7)−0.0016 (7)
C50.0205 (8)0.0220 (8)0.0212 (7)0.0022 (7)0.0143 (7)0.0010 (7)
C20.0214 (8)0.0212 (8)0.0201 (8)−0.0022 (7)0.0114 (7)−0.0010 (7)
C100.0285 (9)0.0455 (12)0.0315 (9)0.0064 (9)0.0230 (8)0.0043 (9)
C140.0224 (9)0.0245 (9)0.0379 (10)0.0048 (7)0.0176 (8)0.0055 (8)
C70.0198 (8)0.0281 (9)0.0290 (9)0.0042 (7)0.0163 (7)−0.0020 (8)
C10.0291 (9)0.0364 (11)0.0205 (8)0.0007 (8)0.0127 (8)0.0025 (8)
C90.0251 (9)0.0299 (10)0.0390 (10)0.0022 (8)0.0224 (8)0.0014 (8)
O1—C81.223 (2)C6—C101.537 (2)
N3—C41.360 (2)C6—C71.544 (2)
N3—N41.3811 (18)C6—C51.552 (2)
N3—C111.424 (2)C15—C141.380 (3)
N4—C21.325 (2)C15—H150.9300
C4—C31.378 (2)C8—C71.515 (2)
C4—C51.502 (2)C5—H50.9800
N2—C111.328 (2)C2—C11.496 (2)
N2—C151.341 (2)C10—H10A0.9600
C12—C131.383 (2)C10—H10B0.9600
C12—C111.383 (2)C10—H10C0.9600
C12—H120.9300C14—H140.9300
N1—C51.509 (2)C7—H7A0.9700
N1—H1N10.97 (2)C7—H7B0.9700
N1—H2N10.97 (2)C1—H1A0.9600
N1—H3N10.93 (2)C1—H1B0.9600
C13—C141.381 (3)C1—H1C0.9600
C13—H130.9300C9—H9A0.9600
C3—C21.424 (2)C9—H9B0.9600
C3—C81.459 (2)C9—H9C0.9600
C6—C91.535 (3)
C4—N3—N4111.53 (12)C3—C8—C7114.43 (14)
C4—N3—C11129.76 (13)C4—C5—N1109.18 (13)
N4—N3—C11118.61 (12)C4—C5—C6110.02 (13)
C2—N4—N3105.47 (13)N1—C5—C6111.99 (13)
N3—C4—C3106.66 (13)C4—C5—H5108.5
N3—C4—C5127.76 (14)N1—C5—H5108.5
C3—C4—C5125.56 (14)C6—C5—H5108.5
C11—N2—C15116.33 (14)N4—C2—C3110.63 (14)
C13—C12—C11116.96 (15)N4—C2—C1120.64 (15)
C13—C12—H12121.5C3—C2—C1128.72 (16)
C11—C12—H12121.5C6—C10—H10A109.5
N2—C11—C12125.07 (15)C6—C10—H10B109.5
N2—C11—N3114.67 (13)H10A—C10—H10B109.5
C12—C11—N3120.26 (14)C6—C10—H10C109.5
C5—N1—H1N1110.3 (13)H10A—C10—H10C109.5
C5—N1—H2N1110.9 (14)H10B—C10—H10C109.5
H1N1—N1—H2N1106.3 (18)C15—C14—C13118.12 (16)
C5—N1—H3N1114.2 (13)C15—C14—H14120.9
H1N1—N1—H3N1107.5 (19)C13—C14—H14120.9
H2N1—N1—H3N1107.3 (19)C8—C7—C6114.06 (14)
C14—C13—C12119.76 (16)C8—C7—H7A108.7
C14—C13—H13120.1C6—C7—H7A108.7
C12—C13—H13120.1C8—C7—H7B108.7
C4—C3—C2105.68 (14)C6—C7—H7B108.7
C4—C3—C8121.68 (14)H7A—C7—H7B107.6
C2—C3—C8132.55 (15)C2—C1—H1A109.5
C9—C6—C10108.51 (15)C2—C1—H1B109.5
C9—C6—C7109.37 (14)H1A—C1—H1B109.5
C10—C6—C7110.59 (14)C2—C1—H1C109.5
C9—C6—C5108.97 (14)H1A—C1—H1C109.5
C10—C6—C5109.35 (13)H1B—C1—H1C109.5
C7—C6—C5110.02 (14)C6—C9—H9A109.5
N2—C15—C14123.68 (16)C6—C9—H9B109.5
N2—C15—H15118.2H9A—C9—H9B109.5
C14—C15—H15118.2C6—C9—H9C109.5
O1—C8—C3123.57 (16)H9A—C9—H9C109.5
O1—C8—C7121.97 (15)H9B—C9—H9C109.5
C4—N3—N4—C20.69 (18)N3—C4—C5—N1−74.7 (2)
C11—N3—N4—C2−176.00 (14)C3—C4—C5—N1107.05 (18)
N4—N3—C4—C30.27 (18)N3—C4—C5—C6162.06 (16)
C11—N3—C4—C3176.49 (15)C3—C4—C5—C6−16.2 (2)
N4—N3—C4—C5−178.26 (15)C9—C6—C5—C4−74.59 (17)
C11—N3—C4—C5−2.0 (3)C10—C6—C5—C4166.95 (14)
C15—N2—C11—C121.4 (2)C7—C6—C5—C445.31 (18)
C15—N2—C11—N3−178.55 (14)C9—C6—C5—N1163.80 (14)
C13—C12—C11—N21.1 (3)C10—C6—C5—N145.35 (19)
C13—C12—C11—N3−178.92 (15)C7—C6—C5—N1−76.29 (16)
C4—N3—C11—N214.7 (2)N3—N4—C2—C3−1.36 (18)
N4—N3—C11—N2−169.29 (14)N3—N4—C2—C1177.90 (15)
C4—N3—C11—C12−165.27 (16)C4—C3—C2—N41.55 (19)
N4—N3—C11—C1210.7 (2)C8—C3—C2—N4−174.86 (17)
C11—C12—C13—C14−2.6 (3)C4—C3—C2—C1−177.64 (17)
N3—C4—C3—C2−1.05 (18)C8—C3—C2—C16.0 (3)
C5—C4—C3—C2177.52 (15)N2—C15—C14—C131.0 (3)
N3—C4—C3—C8175.84 (15)C12—C13—C14—C151.7 (3)
C5—C4—C3—C8−5.6 (3)O1—C8—C7—C6−145.62 (17)
C11—N2—C15—C14−2.5 (3)C3—C8—C7—C636.1 (2)
C4—C3—C8—O1177.45 (17)C9—C6—C7—C862.12 (18)
C2—C3—C8—O1−6.6 (3)C10—C6—C7—C8−178.44 (14)
C4—C3—C8—C7−4.4 (2)C5—C6—C7—C8−57.54 (19)
C2—C3—C8—C7171.59 (17)
D—H···AD—HH···AD···AD—H···A
C12—H12···Cl1i0.932.803.4470 (17)127
C14—H14···O1ii0.932.443.277 (2)150
C7—H7A···Cl1iii0.972.713.6401 (18)160
C1—H1B···O1iv0.962.603.503 (2)156
N1—H1N1···N4v0.97 (2)2.29 (2)3.218 (2)161 (2)
N1—H1N1···N20.97 (2)2.42 (2)2.928 (2)112 (2)
N1—H2N1···Cl1vi0.97 (2)2.08 (2)3.034 (2)168 (2)
N1—H3N1···Cl1iii0.93 (2)2.27 (2)3.188 (2)167 (2)
C15H19N4O+·Cl·H2OF(000) = 688
Mr = 324.81Dx = 1.382 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 10.1855 (2) ÅCell parameters from 8626 reflections
b = 7.4951 (2) Åθ = 1.0–27.5°
c = 20.7961 (4) ŵ = 0.26 mm1
β = 100.545 (1)°T = 190 K
V = 1560.79 (6) Å3Block, colourless
Z = 40.42 × 0.25 × 0.14 mm
Nonius KappaCCD diffractometerRint = 0.023
Radiation source: fine-focus sealed tubeθmax = 27.7°, θmin = 3.6°
CCD scansh = −13→13
5549 measured reflectionsk = −9→9
3552 independent reflectionsl = −27→26
2874 reflections with I > 2σ(I)
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.102w = 1/[σ2(Fo2) + (0.0426P)2 + 0.794P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3552 reflectionsΔρmax = 0.29 e Å3
222 parametersΔρmin = −0.28 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Cl10.06154 (4)0.62526 (6)0.39636 (2)0.02975 (13)
O10.45919 (12)−0.12171 (17)0.26173 (5)0.0286 (3)
N20.33632 (13)0.28400 (18)0.51823 (6)0.0210 (3)
O1W−0.00940 (13)0.25508 (19)0.46352 (7)0.0328 (3)
N30.48296 (12)0.17260 (17)0.45521 (6)0.0159 (3)
N10.18153 (14)0.01688 (19)0.43612 (7)0.0183 (3)
N40.61172 (12)0.13967 (18)0.44629 (6)0.0196 (3)
C50.24311 (14)0.1376 (2)0.39147 (7)0.0155 (3)
H50.2239320.2613030.4019630.019*
C120.57141 (16)0.3394 (2)0.55440 (8)0.0219 (3)
H120.6584650.3267360.5473120.026*
C110.46319 (15)0.2686 (2)0.51150 (7)0.0174 (3)
C40.39179 (14)0.1150 (2)0.40322 (7)0.0153 (3)
C60.18454 (15)0.1060 (2)0.31807 (7)0.0176 (3)
C100.03220 (16)0.0870 (2)0.30801 (8)0.0246 (4)
H10A0.009876−0.0204140.3287510.037*
H10B−0.0039160.0816670.2620560.037*
H10C−0.0047050.1878310.3269350.037*
C90.21584 (16)0.2703 (2)0.27933 (8)0.0227 (3)
H9A0.1808100.3752460.2966170.034*
H9B0.1754560.2564600.2341440.034*
H9C0.3107860.2820020.2830390.034*
C30.46350 (15)0.0404 (2)0.35966 (7)0.0166 (3)
C80.39804 (16)−0.0515 (2)0.30028 (7)0.0192 (3)
C150.31230 (18)0.3783 (2)0.56960 (8)0.0270 (4)
H150.2240580.3952220.5742400.032*
C70.24693 (16)−0.0608 (2)0.29224 (7)0.0213 (3)
H7A0.223032−0.1649810.3152750.026*
H7B0.209284−0.0758060.2462290.026*
C140.4120 (2)0.4514 (2)0.61590 (8)0.0299 (4)
H140.3915610.5137860.6514500.036*
C130.54279 (19)0.4297 (2)0.60821 (8)0.0280 (4)
H130.6118250.4758970.6392600.034*
C20.59994 (15)0.0631 (2)0.38810 (7)0.0196 (3)
C10.72083 (17)0.0203 (3)0.36008 (9)0.0295 (4)
H1A0.7995160.0464290.3917670.044*
H1B0.7207840.0908540.3215500.044*
H1C0.720059−0.1040050.3488780.044*
H1W−0.026 (3)0.288 (4)0.4977 (14)0.063 (9)*
H2W0.012 (3)0.362 (4)0.4440 (13)0.066 (8)*
H1N10.1557 (19)−0.083 (3)0.4188 (9)0.024 (5)*
H2N10.244 (2)−0.009 (3)0.4766 (11)0.036 (5)*
H3N10.112 (2)0.080 (3)0.4513 (11)0.049 (7)*
U11U22U33U12U13U23
Cl10.0343 (2)0.0261 (2)0.0301 (2)−0.00602 (18)0.00909 (17)−0.00145 (17)
O10.0328 (7)0.0360 (7)0.0182 (6)0.0076 (5)0.0077 (5)−0.0040 (5)
N20.0237 (7)0.0214 (7)0.0185 (6)0.0011 (6)0.0053 (5)−0.0027 (6)
O1W0.0343 (7)0.0287 (7)0.0385 (8)0.0014 (6)0.0152 (6)−0.0051 (6)
N30.0144 (6)0.0174 (6)0.0156 (6)−0.0002 (5)0.0018 (5)0.0000 (5)
N10.0185 (7)0.0208 (7)0.0162 (6)−0.0037 (6)0.0045 (5)−0.0014 (6)
N40.0140 (6)0.0226 (7)0.0222 (7)0.0005 (5)0.0036 (5)0.0019 (6)
C50.0155 (7)0.0168 (7)0.0143 (7)−0.0016 (6)0.0026 (5)0.0007 (6)
C120.0250 (8)0.0171 (7)0.0211 (8)−0.0021 (6)−0.0029 (6)0.0022 (6)
C110.0226 (8)0.0141 (7)0.0147 (7)−0.0004 (6)0.0018 (6)0.0019 (6)
C40.0164 (7)0.0153 (7)0.0138 (7)−0.0017 (6)0.0022 (5)0.0020 (6)
C60.0156 (7)0.0224 (8)0.0140 (7)−0.0015 (6)0.0003 (5)0.0008 (6)
C100.0177 (8)0.0332 (9)0.0216 (8)−0.0044 (7)−0.0002 (6)−0.0003 (7)
C90.0221 (8)0.0251 (9)0.0193 (7)−0.0006 (7)−0.0004 (6)0.0054 (7)
C30.0185 (7)0.0171 (7)0.0146 (7)0.0000 (6)0.0039 (6)0.0017 (6)
C80.0262 (8)0.0180 (7)0.0139 (7)0.0015 (6)0.0045 (6)0.0031 (6)
C150.0344 (9)0.0263 (9)0.0222 (8)0.0030 (7)0.0100 (7)−0.0024 (7)
C70.0244 (8)0.0229 (8)0.0163 (7)−0.0042 (7)0.0033 (6)−0.0034 (6)
C140.0506 (12)0.0225 (9)0.0173 (7)−0.0006 (8)0.0079 (7)−0.0035 (7)
C130.0427 (11)0.0181 (8)0.0189 (8)−0.0055 (7)−0.0061 (7)−0.0014 (7)
C20.0183 (8)0.0210 (8)0.0201 (7)0.0016 (6)0.0054 (6)0.0036 (6)
C10.0205 (8)0.0392 (11)0.0310 (9)0.0027 (8)0.0109 (7)0.0000 (8)
O1—C81.2207 (19)C6—C71.543 (2)
N2—C111.330 (2)C10—H10A0.9600
N2—C151.340 (2)C10—H10B0.9600
O1W—H1W0.80 (3)C10—H10C0.9600
O1W—H2W0.94 (3)C9—H9A0.9600
N3—C41.3601 (18)C9—H9B0.9600
N3—N41.3800 (17)C9—H9C0.9600
N3—C111.4196 (19)C3—C21.418 (2)
N1—C51.5127 (19)C3—C81.464 (2)
N1—H1N10.85 (2)C8—C71.519 (2)
N1—H2N10.98 (2)C15—C141.378 (3)
N1—H3N10.95 (2)C15—H150.9300
N4—C21.325 (2)C7—H7A0.9700
C5—C41.499 (2)C7—H7B0.9700
C5—C61.5522 (19)C14—C131.380 (3)
C5—H50.9800C14—H140.9300
C12—C131.384 (2)C13—H130.9300
C12—C111.390 (2)C2—C11.491 (2)
C12—H120.9300C1—H1A0.9600
C4—C31.382 (2)C1—H1B0.9600
C6—C101.534 (2)C1—H1C0.9600
C6—C91.537 (2)
C11—N2—C15116.89 (14)H10B—C10—H10C109.5
H1W—O1W—H2W103 (3)C6—C9—H9A109.5
C4—N3—N4111.34 (12)C6—C9—H9B109.5
C4—N3—C11129.57 (13)H9A—C9—H9B109.5
N4—N3—C11118.90 (12)C6—C9—H9C109.5
C5—N1—H1N1113.5 (13)H9A—C9—H9C109.5
C5—N1—H2N1111.4 (12)H9B—C9—H9C109.5
H1N1—N1—H2N1106.9 (18)C4—C3—C2105.85 (13)
C5—N1—H3N1108.9 (15)C4—C3—C8122.00 (13)
H1N1—N1—H3N1112.7 (19)C2—C3—C8132.00 (14)
H2N1—N1—H3N1102.9 (18)O1—C8—C3123.26 (15)
C2—N4—N3105.71 (12)O1—C8—C7122.43 (14)
C4—C5—N1110.64 (12)C3—C8—C7114.23 (13)
C4—C5—C6109.76 (12)N2—C15—C14123.21 (17)
N1—C5—C6112.59 (12)N2—C15—H15118.4
C4—C5—H5107.9C14—C15—H15118.4
N1—C5—H5107.9C8—C7—C6113.45 (13)
C6—C5—H5107.9C8—C7—H7A108.9
C13—C12—C11116.49 (16)C6—C7—H7A108.9
C13—C12—H12121.8C8—C7—H7B108.9
C11—C12—H12121.8C6—C7—H7B108.9
N2—C11—C12124.81 (14)H7A—C7—H7B107.7
N2—C11—N3114.70 (13)C15—C14—C13118.40 (16)
C12—C11—N3120.48 (14)C15—C14—H14120.8
N3—C4—C3106.48 (13)C13—C14—H14120.8
N3—C4—C5128.05 (13)C14—C13—C12120.12 (16)
C3—C4—C5125.34 (13)C14—C13—H13119.9
C10—C6—C9107.73 (13)C12—C13—H13119.9
C10—C6—C7110.38 (13)N4—C2—C3110.57 (13)
C9—C6—C7109.20 (12)N4—C2—C1120.48 (14)
C10—C6—C5110.21 (12)C3—C2—C1128.90 (15)
C9—C6—C5108.27 (12)C2—C1—H1A109.5
C7—C6—C5110.96 (12)C2—C1—H1B109.5
C6—C10—H10A109.5H1A—C1—H1B109.5
C6—C10—H10B109.5C2—C1—H1C109.5
H10A—C10—H10B109.5H1A—C1—H1C109.5
C6—C10—H10C109.5H1B—C1—H1C109.5
H10A—C10—H10C109.5
C4—N3—N4—C20.70 (17)N3—C4—C3—C2−1.90 (16)
C11—N3—N4—C2−174.73 (13)C5—C4—C3—C2174.12 (14)
C15—N2—C11—C121.5 (2)N3—C4—C3—C8174.09 (13)
C15—N2—C11—N3−178.02 (14)C5—C4—C3—C8−9.9 (2)
C13—C12—C11—N21.0 (2)C4—C3—C8—O1−178.45 (15)
C13—C12—C11—N3−179.50 (14)C2—C3—C8—O1−3.6 (3)
C4—N3—C11—N29.7 (2)C4—C3—C8—C7−1.5 (2)
N4—N3—C11—N2−175.82 (13)C2—C3—C8—C7173.30 (16)
C4—N3—C11—C12−169.86 (15)C11—N2—C15—C14−2.8 (2)
N4—N3—C11—C124.6 (2)O1—C8—C7—C6−148.01 (15)
N4—N3—C4—C30.81 (17)C3—C8—C7—C635.01 (18)
C11—N3—C4—C3175.62 (14)C10—C6—C7—C8179.76 (13)
N4—N3—C4—C5−175.06 (14)C9—C6—C7—C861.51 (16)
C11—N3—C4—C5−0.3 (2)C5—C6—C7—C8−57.76 (16)
N1—C5—C4—N3−72.98 (19)N2—C15—C14—C131.5 (3)
C6—C5—C4—N3162.17 (14)C15—C14—C13—C121.2 (3)
N1—C5—C4—C3111.88 (16)C11—C12—C13—C14−2.3 (2)
C6—C5—C4—C3−13.0 (2)N3—N4—C2—C3−1.93 (17)
C4—C5—C6—C10167.33 (13)N3—N4—C2—C1175.62 (15)
N1—C5—C6—C1043.61 (17)C4—C3—C2—N42.45 (18)
C4—C5—C6—C9−75.07 (15)C8—C3—C2—N4−172.97 (15)
N1—C5—C6—C9161.21 (13)C4—C3—C2—C1−174.84 (17)
C4—C5—C6—C744.75 (16)C8—C3—C2—C19.7 (3)
N1—C5—C6—C7−78.96 (15)
D—H···AD—HH···AD···AD—H···A
C12—H12···Cl1i0.932.903.7006 (17)145
C14—H14···O1ii0.932.413.244 (2)149
O1W—H1W···Cl1iii0.80 (3)2.39 (3)3.185 (2)176 (3)
O1W—H2W···Cl10.94 (3)2.31 (3)3.247 (2)179 (2)
N1—H1N1···Cl1iv0.85 (2)2.40 (2)3.228 (2)165 (2)
N1—H2N1···N4v0.98 (2)2.20 (2)3.1475 (19)164 (2)
N1—H3N1···O1W0.95 (2)1.85 (3)2.775 (2)162 (2)
  14 in total

1.  Tetrahydroindazolone substituted 2-aminobenzamides as fluorescent probes: switching metal ion selectivity from zinc to cadmium by interchanging the amino and carbamoyl groups on the fluorophore.

Authors:  Jia Jia; Qin-Chao Xu; Ri-chen Li; Xi Tang; Ying-Fang He; Meng-Yu Zhang; Yuan Zhang; Guo-Wen Xing
Journal:  Org Biomol Chem       Date:  2012-06-21       Impact factor: 3.876

2.  Efficient synthesis of highly substituted tetrahydroindazolone derivatives.

Authors:  Angela Scala; Anna Piperno; Francesco Risitano; Santa Cirmi; Michele Navarra; Giovanni Grassi
Journal:  Mol Divers       Date:  2015-03-18       Impact factor: 2.943

3.  Synthesis and evaluation of tetrahydroindazole derivatives as sigma-2 receptor ligands.

Authors:  Zong-Wen Wu; Shu-Yong Song; Li Li; He-Lin Lu; Brian Lieberman; Yun-Sheng Huang; Robert H Mach
Journal:  Bioorg Med Chem       Date:  2015-02-16       Impact factor: 3.641

4.  Tetrahydroindazole inhibitors of bacterial type II topoisomerases. Part 2: SAR development and potency against multidrug-resistant strains.

Authors:  John J M Wiener; Laurent Gomez; Hariharan Venkatesan; Alejandro Santillán; Brett D Allison; Kimberly L Schwarz; Shirin Shinde; Liu Tang; Michael D Hack; Brian J Morrow; S Timothy Motley; Raul M Goldschmidt; Karen Joy Shaw; Todd K Jones; Cheryl A Grice
Journal:  Bioorg Med Chem Lett       Date:  2007-03-06       Impact factor: 2.823

5.  Synthesis and in vitro antitumor and antimicrobial activity of some 2,3-diaryl-7-methyl-4,5,6,7-tetrahydroindazole and 3,3a,4,5,6,7-hexahydroindazole derivatives.

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Journal:  J Enzyme Inhib Med Chem       Date:  2012-02-13       Impact factor: 5.051

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