| Literature DB >> 29250409 |
Abstract
The asymmetric unit of the title co-crystal salt,Entities:
Keywords: co-crystal salt; crystal structure; imidazole; picric acid
Year: 2017 PMID: 29250409 PMCID: PMC5730246 DOI: 10.1107/S2056989017016401
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The morphologies of the two molecular salts: needle (a) of (I) and block (b) of the crystal structure reported by Moreno-Fuquen et al. (2011 ▸).
Figure 2Molecular structure of (I), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N4—H4⋯O8i | 0.93 (3) | 1.83 (3) | 2.763 (3) | 172 (3) |
| N5—H5 | 0.89 (3) | 1.94 (3) | 2.812 (2) | 165 (3) |
| N5—H5 | 0.89 (3) | 2.46 (3) | 2.956 (3) | 116 (2) |
| O8—H8 | 0.82 (4) | 2.29 (4) | 3.034 (2) | 151 (3) |
| O8—H8 | 0.88 (4) | 2.04 (4) | 2.899 (2) | 165 (3) |
| O8—H8 | 0.88 (4) | 2.44 (4) | 2.943 (3) | 117 (3) |
| C5—H5⋯O2iv | 0.95 | 2.49 | 3.383 (3) | 157 |
| C7—H7⋯O5v | 0.95 | 2.37 | 3.187 (3) | 144 |
| C8—H8⋯O4vi | 0.95 | 2.44 | 3.188 (3) | 135 |
| C8—H8⋯O8 | 0.95 | 2.53 | 3.255 (3) | 133 |
| C9—H9⋯O7vii | 0.95 | 2.48 | 3.349 (3) | 152 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .
Figure 3Part of the crystal structure of (I), showing (a) the formation of the three-dimensional hydrogen-bonded network by N—H⋯O and O—H⋯O hydrogen bonds as dashed lines, (b) the simplified network when picrate, water and imidazolium ions are considered as 3-, 3- and 2-connected nodes, respectively, and (c) the simplified utp network.
Figure 4Fingerprint plots of co-crystal salt (I) showing the percentage of the O⋯H and C⋯C contacts around the environment of picrate and imidazolium ions.
Experimental details
| Crystal data | |
| Chemical formula | C3H5N2 +·C6H2N3O7 −·H2O |
|
| 315.21 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 100 |
|
| 21.577 (11), 3.5533 (18), 16.096 (8) |
|
| 1234.0 (11) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.15 |
| Crystal size (mm) | 0.40 × 0.04 × 0.02 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.937, 0.997 |
| No. of measured, independent and observed [ | 11664, 3837, 3367 |
|
| 0.038 |
| (sin θ/λ)max (Å−1) | 0.724 |
| Refinement | |
|
| 0.035, 0.086, 1.04 |
| No. of reflections | 3837 |
| No. of parameters | 211 |
| No. of restraints | 1 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.35, −0.22 |
Computer programs: APEX2 and SAINT (Bruker, 2001 ▸), SHELXS97 and SHELXTL (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸) and DIAMOND (Brandenburg, 2006 ▸).
| C3H5N2+·C6H2N3O7−·H2O | |
| Mo | |
| Orthorhombic, | Cell parameters from 4015 reflections |
| θ = 2.3–31.2° | |
| µ = 0.15 mm−1 | |
| Needle, yellow | |
| 0.40 × 0.04 × 0.02 mm | |
| Bruker APEXII CCD diffractometer | 3367 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2001) | θmax = 31.0°, θmin = 1.9° |
| 11664 measured reflections | |
| 3837 independent reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.35 e Å−3 | |
| 3837 reflections | Δρmin = −0.22 e Å−3 |
| 211 parameters | Absolute structure: Flack |
| 1 restraint | Absolute structure parameter: 0.4 (5) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.67480 (9) | −0.0182 (6) | 0.64727 (12) | 0.0122 (3) | |
| C2 | 0.72241 (9) | 0.0454 (6) | 0.70899 (11) | 0.0125 (4) | |
| C3 | 0.78154 (9) | 0.1698 (6) | 0.69303 (11) | 0.0131 (4) | |
| H3 | 0.8106 | 0.2010 | 0.7368 | 0.016* | |
| C4 | 0.79782 (9) | 0.2488 (6) | 0.61128 (12) | 0.0128 (3) | |
| C5 | 0.75625 (8) | 0.1917 (6) | 0.54609 (12) | 0.0133 (4) | |
| H5 | 0.7681 | 0.2377 | 0.4902 | 0.016* | |
| C6 | 0.69788 (9) | 0.0674 (6) | 0.56500 (12) | 0.0125 (3) | |
| C8 | 0.48877 (9) | 0.4718 (7) | 0.77357 (13) | 0.0172 (4) | |
| H8 | 0.4715 | 0.4535 | 0.7194 | 0.021* | |
| C9 | 0.46050 (9) | 0.3770 (7) | 0.84591 (13) | 0.0181 (4) | |
| H9 | 0.4197 | 0.2809 | 0.8522 | 0.022* | |
| N1 | 0.70790 (8) | −0.0342 (5) | 0.79547 (11) | 0.0143 (3) | |
| N2 | 0.85824 (8) | 0.4007 (5) | 0.59405 (11) | 0.0150 (3) | |
| N3 | 0.65576 (8) | 0.0095 (5) | 0.49511 (11) | 0.0149 (3) | |
| C7 | 0.55452 (10) | 0.5801 (7) | 0.87530 (13) | 0.0172 (4) | |
| H7 | 0.5908 | 0.6495 | 0.9049 | 0.021* | |
| N4 | 0.50257 (9) | 0.4472 (6) | 0.90866 (12) | 0.0170 (3) | |
| H4 | 0.4957 (14) | 0.398 (9) | 0.9649 (19) | 0.020* | |
| N5 | 0.54696 (8) | 0.5991 (5) | 0.79335 (11) | 0.0157 (3) | |
| H5A | 0.5763 (13) | 0.682 (8) | 0.7586 (18) | 0.019* | |
| O1 | 0.62270 (6) | −0.1576 (5) | 0.66176 (9) | 0.0156 (3) | |
| O4 | 0.89440 (7) | 0.4486 (5) | 0.65267 (10) | 0.0226 (3) | |
| O5 | 0.87159 (7) | 0.4829 (5) | 0.52189 (10) | 0.0226 (4) | |
| O8 | 0.50725 (7) | 0.6717 (6) | 0.57776 (10) | 0.0214 (3) | |
| H8A | 0.4849 (16) | 0.841 (10) | 0.594 (2) | 0.032* | |
| H8B | 0.5441 (17) | 0.745 (10) | 0.595 (2) | 0.032* | |
| O2 | 0.74665 (8) | −0.1992 (5) | 0.83731 (10) | 0.0227 (4) | |
| O3 | 0.65759 (7) | 0.0718 (5) | 0.82223 (10) | 0.0219 (3) | |
| O6 | 0.60348 (7) | 0.1417 (5) | 0.50023 (10) | 0.0222 (4) | |
| O7 | 0.67538 (7) | −0.1656 (5) | 0.43500 (9) | 0.0211 (3) |
| C1 | 0.0097 (7) | 0.0125 (9) | 0.0143 (8) | 0.0002 (6) | 0.0006 (6) | 0.0003 (7) |
| C2 | 0.0109 (8) | 0.0138 (10) | 0.0127 (8) | 0.0000 (7) | 0.0006 (6) | 0.0008 (7) |
| C3 | 0.0099 (8) | 0.0138 (10) | 0.0157 (8) | 0.0014 (7) | −0.0005 (6) | −0.0006 (7) |
| C4 | 0.0085 (7) | 0.0128 (9) | 0.0171 (8) | −0.0001 (6) | 0.0008 (6) | −0.0002 (6) |
| C5 | 0.0115 (8) | 0.0135 (10) | 0.0148 (8) | −0.0003 (7) | 0.0010 (6) | 0.0006 (7) |
| C6 | 0.0101 (8) | 0.0142 (10) | 0.0134 (8) | −0.0012 (7) | −0.0020 (6) | 0.0002 (7) |
| C8 | 0.0135 (9) | 0.0198 (11) | 0.0182 (9) | −0.0029 (7) | 0.0000 (7) | −0.0001 (8) |
| C9 | 0.0125 (8) | 0.0203 (11) | 0.0215 (9) | −0.0020 (8) | 0.0028 (7) | 0.0004 (8) |
| N1 | 0.0133 (8) | 0.0159 (9) | 0.0138 (7) | −0.0034 (6) | −0.0006 (6) | −0.0001 (6) |
| N2 | 0.0097 (7) | 0.0151 (9) | 0.0203 (8) | 0.0000 (6) | 0.0013 (6) | 0.0000 (7) |
| N3 | 0.0129 (8) | 0.0181 (9) | 0.0136 (7) | −0.0029 (6) | −0.0025 (5) | 0.0031 (6) |
| C7 | 0.0132 (9) | 0.0198 (11) | 0.0185 (9) | 0.0008 (7) | 0.0013 (7) | −0.0004 (8) |
| N4 | 0.0143 (7) | 0.0193 (9) | 0.0176 (8) | 0.0004 (7) | 0.0034 (6) | 0.0004 (7) |
| N5 | 0.0122 (8) | 0.0184 (9) | 0.0163 (7) | −0.0012 (6) | 0.0021 (6) | 0.0006 (7) |
| O1 | 0.0095 (6) | 0.0210 (8) | 0.0163 (6) | −0.0035 (5) | −0.0002 (5) | 0.0011 (6) |
| O4 | 0.0112 (6) | 0.0316 (10) | 0.0248 (7) | −0.0045 (6) | −0.0036 (6) | 0.0025 (7) |
| O5 | 0.0166 (7) | 0.0318 (10) | 0.0195 (7) | −0.0063 (6) | 0.0057 (6) | −0.0003 (6) |
| O8 | 0.0122 (7) | 0.0340 (10) | 0.0181 (7) | 0.0016 (7) | −0.0005 (5) | −0.0032 (7) |
| O2 | 0.0228 (8) | 0.0294 (10) | 0.0158 (7) | 0.0039 (7) | −0.0032 (6) | 0.0040 (7) |
| O3 | 0.0141 (7) | 0.0333 (10) | 0.0182 (7) | −0.0005 (6) | 0.0056 (6) | −0.0026 (6) |
| O6 | 0.0124 (7) | 0.0318 (10) | 0.0224 (7) | 0.0042 (6) | −0.0030 (5) | 0.0031 (7) |
| O7 | 0.0187 (7) | 0.0287 (10) | 0.0159 (6) | −0.0031 (6) | −0.0002 (6) | −0.0056 (6) |
| C1—O1 | 1.250 (2) | C9—N4 | 1.381 (3) |
| C1—C2 | 1.447 (3) | C9—H9 | 0.9500 |
| C1—C6 | 1.447 (3) | N1—O2 | 1.223 (2) |
| C2—C3 | 1.374 (3) | N1—O3 | 1.227 (2) |
| C2—N1 | 1.455 (3) | N2—O5 | 1.232 (2) |
| C3—C4 | 1.391 (3) | N2—O4 | 1.236 (2) |
| C3—H3 | 0.9500 | N3—O6 | 1.225 (2) |
| C4—C5 | 1.395 (3) | N3—O7 | 1.226 (3) |
| C4—N2 | 1.438 (3) | C7—N4 | 1.329 (3) |
| C5—C6 | 1.369 (3) | C7—N5 | 1.331 (3) |
| C5—H5 | 0.9500 | C7—H7 | 0.9500 |
| C6—N3 | 1.461 (3) | N4—H4 | 0.93 (3) |
| C8—C9 | 1.357 (3) | N5—H5A | 0.89 (3) |
| C8—N5 | 1.372 (3) | O8—H8A | 0.82 (4) |
| C8—H8 | 0.9500 | O8—H8B | 0.88 (4) |
| O1—C1—C2 | 124.91 (18) | C8—C9—H9 | 126.7 |
| O1—C1—C6 | 124.28 (17) | N4—C9—H9 | 126.7 |
| C2—C1—C6 | 110.56 (16) | O2—N1—O3 | 123.96 (18) |
| C3—C2—C1 | 125.53 (17) | O2—N1—C2 | 118.23 (17) |
| C3—C2—N1 | 116.18 (16) | O3—N1—C2 | 117.81 (17) |
| C1—C2—N1 | 118.28 (17) | O5—N2—O4 | 122.65 (17) |
| C2—C3—C4 | 118.43 (17) | O5—N2—C4 | 118.87 (17) |
| C2—C3—H3 | 120.8 | O4—N2—C4 | 118.47 (16) |
| C4—C3—H3 | 120.8 | O6—N3—O7 | 124.46 (18) |
| C3—C4—C5 | 121.33 (17) | O6—N3—C6 | 117.85 (18) |
| C3—C4—N2 | 119.15 (17) | O7—N3—C6 | 117.69 (17) |
| C5—C4—N2 | 119.50 (17) | N4—C7—N5 | 108.37 (19) |
| C6—C5—C4 | 118.12 (17) | N4—C7—H7 | 125.8 |
| C6—C5—H5 | 120.9 | N5—C7—H7 | 125.8 |
| C4—C5—H5 | 120.9 | C7—N4—C9 | 108.85 (19) |
| C5—C6—C1 | 126.00 (17) | C7—N4—H4 | 126.4 (19) |
| C5—C6—N3 | 116.53 (17) | C9—N4—H4 | 124.7 (19) |
| C1—C6—N3 | 117.46 (16) | C7—N5—C8 | 108.99 (18) |
| C9—C8—N5 | 107.10 (19) | C7—N5—H5A | 123.3 (18) |
| C9—C8—H8 | 126.4 | C8—N5—H5A | 127.7 (18) |
| N5—C8—H8 | 126.4 | H8A—O8—H8B | 102 (3) |
| C8—C9—N4 | 106.69 (18) | ||
| O1—C1—C2—C3 | 174.4 (2) | C3—C2—N1—O2 | −42.2 (3) |
| C6—C1—C2—C3 | 0.0 (3) | C1—C2—N1—O2 | 136.7 (2) |
| O1—C1—C2—N1 | −4.3 (3) | C3—C2—N1—O3 | 137.2 (2) |
| C6—C1—C2—N1 | −178.67 (19) | C1—C2—N1—O3 | −44.0 (3) |
| C1—C2—C3—C4 | 1.1 (3) | C3—C4—N2—O5 | −177.4 (2) |
| N1—C2—C3—C4 | 179.82 (18) | C5—C4—N2—O5 | 1.2 (3) |
| C2—C3—C4—C5 | −2.3 (3) | C3—C4—N2—O4 | 1.5 (3) |
| C2—C3—C4—N2 | 176.28 (19) | C5—C4—N2—O4 | −179.89 (19) |
| C3—C4—C5—C6 | 2.3 (3) | C5—C6—N3—O6 | −132.1 (2) |
| N2—C4—C5—C6 | −176.28 (19) | C1—C6—N3—O6 | 49.1 (3) |
| C4—C5—C6—C1 | −1.1 (3) | C5—C6—N3—O7 | 47.3 (3) |
| C4—C5—C6—N3 | −179.77 (19) | C1—C6—N3—O7 | −131.5 (2) |
| O1—C1—C6—C5 | −174.5 (2) | N5—C7—N4—C9 | 0.3 (3) |
| C2—C1—C6—C5 | 0.0 (3) | C8—C9—N4—C7 | 0.0 (3) |
| O1—C1—C6—N3 | 4.2 (3) | N4—C7—N5—C8 | −0.6 (3) |
| C2—C1—C6—N3 | 178.65 (18) | C9—C8—N5—C7 | 0.6 (3) |
| N5—C8—C9—N4 | −0.3 (3) |
| H··· | ||||
| N4—H4···O8i | 0.93 (3) | 1.83 (3) | 2.763 (3) | 172 (3) |
| N5—H5 | 0.89 (3) | 1.94 (3) | 2.812 (2) | 165 (3) |
| N5—H5 | 0.89 (3) | 2.46 (3) | 2.956 (3) | 116 (2) |
| O8—H8 | 0.82 (4) | 2.29 (4) | 3.034 (2) | 151 (3) |
| O8—H8 | 0.88 (4) | 2.04 (4) | 2.899 (2) | 165 (3) |
| O8—H8 | 0.88 (4) | 2.44 (4) | 2.943 (3) | 117 (3) |
| C5—H5···O2iv | 0.95 | 2.49 | 3.383 (3) | 157 |
| C7—H7···O5v | 0.95 | 2.37 | 3.187 (3) | 144 |
| C7—H7···O3ii | 0.95 | 2.47 | 2.955 (3) | 112 |
| C8—H8···O4vi | 0.95 | 2.44 | 3.188 (3) | 135 |
| C8—H8···O8 | 0.95 | 2.53 | 3.255 (3) | 133 |
| C9—H9···O7vii | 0.95 | 2.48 | 3.349 (3) | 152 |