Literature DB >> 29250380

Crystal structures of 1-benzene-sulfon-yl-2-methyl-3-(4-nitro-benzoyl)-2,3-di-hydro-1H-indole and 1-benzene-sulfon-yl-2-methyl-3-[(thio-phen-2-yl)carbon-yl]-2,3-di-hydro-1H-indole.

G Dhanalakshmi1, Velu Saravanan2, Arasambattu K Mohanakrishnan2, S Aravindhan3.   

Abstract

In the title indole derivatives, n class="Chemical">C22H16N2O5S, (I) and C20H15NO3S2, (II), the sulfonyl-bound phenyl rings are almost orthogonal to the indole ring system, subtending dihedral angles of 88.33 (10) and 87.58 (16)°, respectively. In both compounds, the sulfonyl S atom has a distorted tetra-hedral geometry [O-S-O = 119.98 (9) and N-S-C = 104.01 (8)° for compound (I) and O-S-O = 120.08 (18) and N-S-C = 104.91 (14)° for compound (II)] and the sum of the bond angles at N indicates sp2 hybridization. The mol-ecules of both (I) and (II) feature intra-molecular C-H⋯O hydrogen bonds that generate S(6) ring motifs with the sulfone O atom. In the crystals, mol-ecules of (I) are linked by C-H-O hydrogen bonds, forming R44(18) ring motifs while mol-ecules of (II) are linked by C-H-O and C-H-S hydrogen bonds, forming R22(12) ring motifs. Compound (II) was refined as an inversion twin.

Entities:  

Keywords:  crystal structure; indole; inter- mol­ecular and intra mol­ecular hydrogen bonds; nitro­phen­yl; thio­phen:(phen­yl)methanone

Year:  2017        PMID: 29250380      PMCID: PMC5730317          DOI: 10.1107/S2056989017012804

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Indole is the parent compound of a large number of important compounds in nature with significant biological activity (Kaushik et al., 2013 ▸). n class="Chemical">Indole derivatives are known to exhibit anti-bacterial, anti-fungal (Singh et al., 2000 ▸), anti-tumour (Andreani et al., 2001 ▸), anti­depressant (Grinev et al., 1984 ▸), anti-inflammatory (Rodriguez et al., 1985 ▸) and physiological (Porter et al., 1977 ▸; Sundberg, 1996 ▸) properties. They are used as bioactive drugs (Stevenson et al., 2000 ▸) and have also been proven to display high aldose reductase inhibitory (Rajeswaran et al., 1999 ▸) and anti­microbial activities (Amal Raj et al., 2003 ▸). Indole deriv­atives containing a phenyl­sulfonyl group exhibit insecticidal, germicidal and fungicidal activity (Wolf, 1999 ▸). Against this background, the crystal structure determination of the title compounds was carried out to study their structural aspects and the results are presented here.

Structural commentary

The mol­ecular structure of compound (I) is shown in Fig. 1 ▸. The geometric parameters are in close agreement with those of similar structures. (Umadevi et al., 2015a ▸,b ▸). The sulfonyl-bound phenyl ring (C1–C6) is almost orthogonal to the indole ring system (n class="Disease">N1/C7-C14) making a dihedral angle of 88.43 (10)°·The nitro­phenyl ring (C17–C22) forms a dihedral angle of 61.00 (8)° with the indole ring system. The dihedral angle between the phenyl rings is 77.97 (11)°. The C16—C13—C14—N1 torsion angle is 174.58 (16)°. The sum of the bond angles at N1 (357.7°) indicates sp 2 hybridization (Beddoes et al., 1986 ▸).
Figure 1

The mol­ecular structure of compound (I) with the atom labelling. Displacement ellipsoids are drawn at the 40% probability level.

The mol­ecular structure of compound (II) is shown in Fig. 2 ▸. The geometric parameters of (II) are in close agreement with those of similar structures (KamalaKumar et al., 2011 ▸). The sulfonyl-bound phenyl ring (C15–C20) is almost orthogonal to the indole ring system (n class="Chemical">N1/C1–C8), making a dihedral angle of 87.58 (16)°. The dihedral angle between the indole moiety (N1/C1–C8) and the thio­phene ring (S2 /C10–C13) is 56.05 (19)° while that between the thio­phene and phenyl rings is 54.0 (2)°. The C9—C7—C8—N1 torsion angles is 178.5 (3)°. The sum of the bond angles around N1 is 358.4°, indicating sp 2 hybridization.
Figure 2

The mol­ecular structure of compound (II) with the atom labelling. Displacement ellipsoids are drawn at the 40% probability level.

In both compounds, the indole moiety is essentially planar with a maximum deviation of 0.021 (2) Å for both atom C10 in compound (I) and atom C8 in compound (II). In both compounds, the variation in endocyclic angles [119.05 (16)° at C12 and 122.17 (17)° at C7 for compound (I) and 119.7 (3)° at C6 and 121.5 (3)° at C1 for compound (II)] of the n class="Chemical">benzene ring of the indole ring system are due to the fusion of the five- and six -membered rings and the strain is taken up by the angular distortion rather than by bond-length distortion (Allen et al., 1987 ▸). Atom S1 has a distorted tetra­hedral configuration with angles O1—S1—O2 = 119.98 (9) and n class="Chemical">N1—S1—C6 = 104.01 (8)° for compound (I) and O1—S1—O2 = 120.08 (18) and N1—S1—C20 = 104.91 (14)° for compound (II), differing from the ideal tetra­hedral values attributing to the Thorpe–Ingold effect (Bassindale,1984 ▸). As a result of the electron-withdrawing character of the phenyl­sulfonyl group, in both compounds the N—C bond lengths [N1—C7 = 1.418 (2) and N1—C14 = 1.412 (2) Å for compound (I) and N1—C1 = 1.413 (4) and N1—C8 = 1.421 (4) Å for compound (II) are longer than the mean value of 1.355 (14) Å (Allen et al., 1987 ▸). In both compounds, the mol­ecules are stabilized by intra­molecular C—H⋯O hydrogen bonds (Tables 1 ▸ and 2 ▸), which generate S(6) ring motifs with the sulfone oxygen atoms.
Table 1

Hydrogen-bond geometry (Å, °) for (I)

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8⋯O10.932.402.977 (3)120
C8—H8⋯O4i 0.932.603.286 (2)131
C15—H15A⋯O20.962.032.824 (3)139
C19—H19⋯O2ii 0.932.643.388 (2)138

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °) for (II)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O10.932.392.954 (5)119
C2—H2⋯O2i 0.932.653.394 (4)138
C14—H14A⋯O20.962.002.806 (4)140
C14—H14B⋯S2ii 0.962.933.822 (4)156

Symmetry codes: (i) ; (ii) .

Supra­molecular features

In the crystal of (I), the mol­ecules are linked via C8—H8⋯O4i and C19—H19⋯O2ii hydrogen bonds (Fig. 3 ▸), forming (18) motifs (two-dimensional network). In the crystal of (II), the mol­ecules are linked via C2—H2⋯O2i and C14—H14B⋯S2ii n class="Chemical">hydrogen bonds (Fig. 4 ▸), forming (12) motifs (two-dimensional network). No significant π–π or C—H⋯π inter­actions are observed in either compound.
Figure 3

The crystal packing of compound (I) viewed along the a axis, showing the inter­molecular C8—H8—O4 and C19—H19—O2 hydrogen bonds as dashed lines. Symmetry codes are as in Table 1 ▸.

Figure 4

The crystal packing of compound (II) viewed along the b axis, showing the inter­molecular C2—H2—O2 and C14—H14B—S2 hydrogen bonds as dashed lines. Symmetry codes are as in Table 2 ▸.

Database survey

A search of the Cambridge Structural Database (Groom et al., 2016 ▸) yielded 67 hits for the 1-phenyl­sulfonyl-1H-indole moiety and 49 hits for 2-methyl-1-phenyl­sulfonyl-1H-n class="Chemical">indole-3-yl). The compound (2-methyl-1-phen­ylsulfonyl-1H-indol-3-yl)(phen­yl)methanone (LOSMEN; Umadevi et al., 2015a ▸), which crystallizes in the P212121 space group, is the closest analogue of compound (I). The compound (1-phen­ylsulfonyl-1H-indol-2-yl)(thio­phen-2-yl)methanone (ULINEJ; KamalaKumar et al., 2011 ▸), which crystallizes in space group P1, is the closest analogue of compound (II). The packing of compounds (I) and (II) feature C—H⋯O and C—H⋯S inter­actions, but the related structures exhibit C—H⋯O and C—H⋯π inter­actions. In the latter structures, the sulfonyl-bound phenyl ring is almost orthogonal to the indole ring system, making dihedral angles of 84.89 (7) and 54.91 (11)°, respectively, comparable with those observed in the title compounds.

Synthesis and crystallization

Compound (I) To a solution of 4-nitro­benzoyl chloride (2.06 g, 11.07 mmol) in dry DCM (15 ml) at 273 K, n class="Chemical">SnCl4 (2.06 g, 11.07 mmol) was added slowly (5 min). To this, a solution of 1-phenyl­sulfonyl-2-methyl­indole (2 g, 7.38 mmol) in dry DCM (10 ml) was added (5 min) and allowed to stir at room temperature for 48 h. After completion of the reaction (monitored by TLC), it was poured into ice–water (50 ml) containing conc. HCl (10 ml). The organic layer was separated and the aqueous layer was extracted with DCM (2 × 20 ml). The combined organic layer was washed with water (3 × 25 ml) and dried (Na2SO4). The subsequent purification of the crude product either by washing with MeOH or column chromatography (silica gel, hexa­ne:ethyl acetate 8:2) furnished the first title compound as a colourless solid (1.92 g, 62%); m.p. 435–437 K. Compound (II) To a solution of thio­phene-2-carbonyl chloride (1.63 g, 11.07 mmol) and SnCl4 (2.88 g, 11.07 mmol) in n class="Disease">dry DCM (20 ml) at 273 K, a solution of 1-phenyl­sulfonyl-2-methyl­indole (2 g, 7.38 mmol) in dry DCM (10 ml) was added slowly (5 min). Then, it was stirred at room temperature for 30 min. After completion of the reaction (monitored by TLC), it was poured into ice–water (50 ml) containing conc. HCl (10 ml). The organic layer was separated and the aqueous layer was extracted with DCM (2 × 20 ml). The combined organic extract was washed with water (3 × 25 ml) and dried (Na2SO4). Evaporation of the solvent followed by trituration of the crude product with MeOH (5 ml) gave the second title compound as a colourless solid (2.19 g, 78%); m.p. 379–381 K.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. H atoms were localized from the difference electron-density maps and refined as riding atoms with C—H = 0.93 or 0.97 Å with U iso(H) = 1.5U eq(C) for methyl n class="Disease">H atoms and 1.2U eq(C) for other H atoms. Compound (II) was refined as an inversion twin (BASF 0.03).
Table 3

Experimental details

 (I)(II)
Crystal data
Chemical formulaC22H16N2O5SC20H15NO3S2
M r 420.43381.45
Crystal system, space groupMonoclinic, P21/n Orthorhombic, P212121
Temperature (K)296293
a, b, c (Å)8.1358 (2), 23.8364 (7), 10.5983 (3)8.9300 (2), 10.8141 (3), 18.6398 (5)
α, β, γ (°)90, 110.210 (1), 9090, 90, 90
V3)1928.77 (9)1800.04 (8)
Z 44
Radiation typeCu KαCu Kα
μ (mm−1)1.832.85
Crystal size (mm)0.20 × 0.15 × 0.150.25 × 0.20 × 0.15
 
Data collection
DiffractometerBruker Kappa APEX3 CMOSBruker Kappa APEX3 CMOS
Absorption correctionMulti-scan (SADABS; Bruker, 2016)Multi-scan (SADABS; Bruker, 2016)
T min, T max 0.657, 0.7540.599, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections30940, 3780, 337925415, 3538, 3314
R int 0.0420.043
(sin θ/λ)max−1)0.6190.618
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.042, 0.118, 1.070.039, 0.106, 1.06
No. of reflections37803538
No. of parameters271236
H-atom treatmentH-atom parameters constrainedH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.45, −0.390.24, −0.38
Absolute structureRefined as an inversion twin
Absolute structure parameter0.03 (3)

Computer programs: APEX3, SAINT and XPREP (Bruker, 2016 ▸), SHELXT2014/7 (Sheldrick, 2015a ▸), SHELXL2014/7 (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2008 ▸).

Crystal structure: contains datablock(s) I, II. DOI: 10.1107/S2056989017012804/ff2151sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017012804/ff2151Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989017012804/ff2151Isup4.cml Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989017012804/ff2151IIsup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989017012804/ff2151IIsup5.cml CCDC references: 1561045, 1561044 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H16N2O5SF(000) = 872
Mr = 420.43Dx = 1.448 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
a = 8.1358 (2) ÅCell parameters from 9895 reflections
b = 23.8364 (7) Åθ = 3.7–72.4°
c = 10.5983 (3) ŵ = 1.83 mm1
β = 110.210 (1)°T = 296 K
V = 1928.77 (9) Å3Block, colourless
Z = 40.20 × 0.15 × 0.15 mm
Bruker Kappa APEX3 CMOS diffractometer3780 independent reflections
Radiation source: micro-focus sealed tube3379 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
ω and φ scanθmax = 72.5°, θmin = 3.7°
Absorption correction: multi-scan (SADABS; Bruker, 2016)h = −10→10
Tmin = 0.657, Tmax = 0.754k = −29→29
30940 measured reflectionsl = −13→12
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.118w = 1/[σ2(Fo2) + (0.0653P)2 + 0.7114P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3780 reflectionsΔρmax = 0.45 e Å3
271 parametersΔρmin = −0.39 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C11.0703 (3)0.92527 (10)0.0217 (3)0.0560 (6)
H10.97590.93760.04480.067*
C21.2366 (3)0.94573 (12)0.0873 (3)0.0730 (8)
H21.25480.97200.15570.088*
C31.3757 (3)0.92775 (12)0.0526 (3)0.0662 (7)
H31.48690.94230.09620.079*
C41.3504 (3)0.88822 (12)−0.0466 (2)0.0587 (6)
H41.44520.8756−0.06860.070*
C51.1860 (3)0.86712 (9)−0.1135 (2)0.0446 (4)
H51.16870.8405−0.18100.054*
C61.0471 (2)0.88612 (7)−0.07867 (18)0.0351 (4)
C70.8417 (2)0.79012 (7)0.03534 (17)0.0337 (4)
C80.8116 (3)0.82909 (8)0.1227 (2)0.0419 (4)
H80.78170.86600.09620.050*
C90.8278 (3)0.81092 (9)0.2498 (2)0.0464 (5)
H90.80630.83590.30970.056*
C100.8757 (3)0.75604 (9)0.2906 (2)0.0468 (5)
H100.88930.74520.37800.056*
C110.9033 (2)0.71729 (8)0.20276 (18)0.0406 (4)
H110.93440.68060.23020.049*
C120.8837 (2)0.73419 (7)0.07227 (17)0.0333 (4)
C130.9047 (2)0.70602 (7)−0.04222 (18)0.0347 (4)
C140.8782 (2)0.74412 (7)−0.14365 (18)0.0352 (4)
C150.8744 (3)0.73343 (9)−0.2837 (2)0.0481 (5)
H15A0.85320.7680−0.33310.072*
H15B0.98490.7182−0.28060.072*
H15C0.78270.7072−0.32720.072*
C160.9371 (3)0.64522 (7)−0.05201 (19)0.0387 (4)
C170.8454 (2)0.60596 (7)0.01248 (18)0.0365 (4)
C180.6765 (3)0.61765 (7)0.00916 (19)0.0406 (4)
H180.62050.6501−0.03300.049*
C190.5910 (3)0.58154 (8)0.06783 (19)0.0419 (4)
H190.47720.58870.06440.050*
C200.6803 (3)0.53438 (7)0.13178 (18)0.0402 (4)
C210.8460 (3)0.52090 (8)0.1341 (2)0.0460 (5)
H210.90090.48820.17540.055*
C220.9286 (3)0.55716 (8)0.07365 (19)0.0424 (4)
H221.04040.54890.07390.051*
N10.83594 (19)0.79620 (6)−0.09917 (15)0.0355 (3)
N20.5943 (3)0.49781 (7)0.20229 (18)0.0523 (4)
O10.71132 (17)0.89267 (6)−0.13460 (16)0.0512 (4)
O20.81830 (19)0.85052 (6)−0.30381 (14)0.0496 (4)
O30.4452 (3)0.50868 (8)0.19518 (19)0.0681 (5)
O40.6773 (3)0.45810 (9)0.2654 (2)0.0889 (7)
O51.0299 (2)0.62677 (6)−0.11082 (17)0.0579 (4)
S10.83727 (5)0.85977 (2)−0.16730 (5)0.03710 (15)
U11U22U33U12U13U23
C10.0467 (11)0.0513 (12)0.0793 (15)−0.0074 (9)0.0336 (11)−0.0216 (11)
C20.0570 (14)0.0802 (17)0.0873 (18)−0.0211 (13)0.0319 (13)−0.0427 (15)
C30.0393 (11)0.0891 (19)0.0686 (15)−0.0184 (11)0.0167 (10)−0.0237 (13)
C40.0322 (10)0.0888 (17)0.0585 (13)−0.0028 (10)0.0199 (9)−0.0153 (12)
C50.0365 (10)0.0551 (11)0.0444 (10)0.0004 (8)0.0167 (8)−0.0068 (8)
C60.0323 (8)0.0303 (8)0.0453 (9)−0.0006 (7)0.0166 (7)0.0042 (7)
C70.0295 (8)0.0317 (8)0.0423 (9)−0.0037 (6)0.0154 (7)0.0008 (7)
C80.0414 (10)0.0321 (9)0.0542 (11)−0.0022 (7)0.0189 (8)−0.0067 (8)
C90.0445 (10)0.0476 (11)0.0519 (11)−0.0070 (8)0.0228 (9)−0.0153 (9)
C100.0484 (11)0.0541 (12)0.0405 (10)−0.0078 (9)0.0189 (8)−0.0039 (8)
C110.0427 (10)0.0380 (9)0.0431 (10)−0.0019 (8)0.0175 (8)0.0037 (7)
C120.0313 (8)0.0298 (8)0.0416 (9)−0.0031 (6)0.0161 (7)−0.0007 (7)
C130.0360 (9)0.0297 (8)0.0425 (9)−0.0019 (7)0.0190 (7)0.0007 (7)
C140.0344 (9)0.0312 (8)0.0432 (9)−0.0021 (7)0.0173 (7)0.0004 (7)
C150.0574 (12)0.0472 (11)0.0438 (10)0.0036 (9)0.0227 (9)0.0021 (8)
C160.0436 (10)0.0318 (9)0.0438 (10)0.0023 (7)0.0191 (8)0.0000 (7)
C170.0441 (10)0.0280 (8)0.0385 (9)−0.0001 (7)0.0159 (7)−0.0022 (7)
C180.0443 (10)0.0284 (8)0.0488 (10)0.0026 (7)0.0158 (8)0.0038 (7)
C190.0449 (10)0.0340 (9)0.0493 (10)−0.0017 (8)0.0194 (8)−0.0044 (7)
C200.0552 (11)0.0307 (9)0.0366 (9)−0.0085 (8)0.0182 (8)−0.0024 (7)
C210.0581 (12)0.0315 (9)0.0473 (10)0.0061 (8)0.0169 (9)0.0073 (7)
C220.0475 (10)0.0325 (9)0.0491 (10)0.0057 (8)0.0192 (8)0.0002 (7)
N10.0379 (8)0.0283 (7)0.0434 (8)−0.0017 (6)0.0178 (6)0.0021 (6)
N20.0705 (12)0.0409 (9)0.0492 (9)−0.0120 (8)0.0254 (9)0.0000 (7)
O10.0350 (7)0.0394 (7)0.0815 (10)0.0079 (6)0.0229 (7)0.0124 (7)
O20.0500 (8)0.0494 (8)0.0436 (7)−0.0066 (6)0.0086 (6)0.0116 (6)
O30.0760 (12)0.0623 (10)0.0812 (12)−0.0144 (9)0.0462 (10)0.0014 (9)
O40.0938 (15)0.0723 (13)0.1039 (15)0.0029 (11)0.0386 (12)0.0502 (12)
O50.0761 (11)0.0427 (8)0.0738 (10)0.0102 (7)0.0499 (9)0.0026 (7)
S10.0300 (2)0.0314 (2)0.0490 (3)0.00052 (15)0.01240 (18)0.00904 (17)
C1—C61.378 (3)C13—C161.483 (2)
C1—C21.379 (3)C14—N11.412 (2)
C1—H10.9300C14—C151.495 (3)
C2—C31.374 (4)C15—H15A0.9600
C2—H20.9300C15—H15B0.9600
C3—C41.373 (3)C15—H15C0.9600
C3—H30.9300C16—O51.216 (2)
C4—C51.374 (3)C16—C171.501 (2)
C4—H40.9300C17—C221.389 (3)
C5—C61.381 (3)C17—C181.391 (3)
C5—H50.9300C18—C191.382 (3)
C6—S11.7561 (18)C18—H180.9300
C7—C81.391 (2)C19—C201.382 (3)
C7—C121.398 (2)C19—H190.9300
C7—N11.418 (2)C20—C211.378 (3)
C8—C91.378 (3)C20—N21.473 (2)
C8—H80.9300C21—C221.381 (3)
C9—C101.390 (3)C21—H210.9300
C9—H90.9300C22—H220.9300
C10—C111.384 (3)N1—S11.6801 (14)
C10—H100.9300N2—O31.217 (3)
C11—C121.396 (2)N2—O41.219 (3)
C11—H110.9300O1—S11.4250 (14)
C12—C131.447 (2)O2—S11.4183 (15)
C13—C141.366 (2)
C6—C1—C2118.5 (2)N1—C14—C15123.86 (16)
C6—C1—H1120.8C14—C15—H15A109.5
C2—C1—H1120.8C14—C15—H15B109.5
C3—C2—C1120.7 (2)H15A—C15—H15B109.5
C3—C2—H2119.7C14—C15—H15C109.5
C1—C2—H2119.7H15A—C15—H15C109.5
C4—C3—C2120.0 (2)H15B—C15—H15C109.5
C4—C3—H3120.0O5—C16—C13123.12 (17)
C2—C3—H3120.0O5—C16—C17120.16 (16)
C3—C4—C5120.5 (2)C13—C16—C17116.71 (15)
C3—C4—H4119.7C22—C17—C18119.84 (17)
C5—C4—H4119.7C22—C17—C16119.77 (17)
C4—C5—C6118.84 (19)C18—C17—C16120.38 (16)
C4—C5—H5120.6C19—C18—C17120.68 (17)
C6—C5—H5120.6C19—C18—H18119.7
C1—C6—C5121.48 (18)C17—C18—H18119.7
C1—C6—S1120.22 (14)C20—C19—C18117.80 (18)
C5—C6—S1118.30 (14)C20—C19—H19121.1
C8—C7—C12122.17 (17)C18—C19—H19121.1
C8—C7—N1130.44 (16)C21—C20—C19122.93 (17)
C12—C7—N1107.38 (15)C21—C20—N2119.08 (18)
C9—C8—C7117.49 (18)C19—C20—N2117.98 (18)
C9—C8—H8121.3C20—C21—C22118.39 (17)
C7—C8—H8121.3C20—C21—H21120.8
C8—C9—C10121.45 (18)C22—C21—H21120.8
C8—C9—H9119.3C21—C22—C17120.29 (19)
C10—C9—H9119.3C21—C22—H22119.9
C11—C10—C9120.78 (18)C17—C22—H22119.9
C11—C10—H10119.6C14—N1—C7108.58 (13)
C9—C10—H10119.6C14—N1—S1127.66 (12)
C10—C11—C12119.00 (18)C7—N1—S1121.43 (12)
C10—C11—H11120.5O3—N2—O4123.39 (19)
C12—C11—H11120.5O3—N2—C20118.71 (18)
C11—C12—C7119.05 (16)O4—N2—C20117.9 (2)
C11—C12—C13133.69 (16)O2—S1—O1119.98 (9)
C7—C12—C13107.21 (15)O2—S1—N1106.48 (8)
C14—C13—C12108.61 (15)O1—S1—N1106.25 (8)
C14—C13—C16125.31 (16)O2—S1—C6110.14 (9)
C12—C13—C16125.96 (15)O1—S1—C6108.72 (9)
C13—C14—N1108.19 (15)N1—S1—C6104.01 (8)
C13—C14—C15127.68 (16)
C6—C1—C2—C30.4 (5)C22—C17—C18—C190.9 (3)
C1—C2—C3—C4−1.2 (5)C16—C17—C18—C19179.71 (17)
C2—C3—C4—C51.2 (4)C17—C18—C19—C201.3 (3)
C3—C4—C5—C6−0.4 (4)C18—C19—C20—C21−2.9 (3)
C2—C1—C6—C50.4 (4)C18—C19—C20—N2175.93 (17)
C2—C1—C6—S1−178.8 (2)C19—C20—C21—C222.2 (3)
C4—C5—C6—C1−0.4 (3)N2—C20—C21—C22−176.61 (17)
C4—C5—C6—S1178.80 (18)C20—C21—C22—C170.1 (3)
C12—C7—C8—C91.2 (3)C18—C17—C22—C21−1.6 (3)
N1—C7—C8—C9−179.64 (17)C16—C17—C22—C21179.56 (18)
C7—C8—C9—C101.2 (3)C13—C14—N1—C71.69 (19)
C8—C9—C10—C11−2.0 (3)C15—C14—N1—C7176.00 (17)
C9—C10—C11—C120.5 (3)C13—C14—N1—S1164.34 (13)
C10—C11—C12—C71.8 (3)C15—C14—N1—S1−21.3 (3)
C10—C11—C12—C13178.71 (19)C8—C7—N1—C14179.50 (18)
C8—C7—C12—C11−2.7 (3)C12—C7—N1—C14−1.21 (18)
N1—C7—C12—C11177.97 (15)C8—C7—N1—S115.6 (3)
C8—C7—C12—C13179.66 (16)C12—C7—N1—S1−165.15 (12)
N1—C7—C12—C130.30 (18)C21—C20—N2—O3−177.00 (19)
C11—C12—C13—C14−176.44 (18)C19—C20—N2—O34.1 (3)
C7—C12—C13—C140.7 (2)C21—C20—N2—O43.2 (3)
C11—C12—C13—C167.5 (3)C19—C20—N2—O4−175.7 (2)
C7—C12—C13—C16−175.30 (17)C14—N1—S1—O223.27 (17)
C12—C13—C14—N1−1.5 (2)C7—N1—S1—O2−176.07 (13)
C16—C13—C14—N1174.58 (16)C14—N1—S1—O1152.25 (15)
C12—C13—C14—C15−175.52 (17)C7—N1—S1—O1−47.09 (15)
C16—C13—C14—C150.6 (3)C14—N1—S1—C6−93.08 (16)
C14—C13—C16—O540.2 (3)C7—N1—S1—C667.58 (14)
C12—C13—C16—O5−144.4 (2)C1—C6—S1—O2144.10 (17)
C14—C13—C16—C17−138.39 (18)C5—C6—S1—O2−35.13 (18)
C12—C13—C16—C1737.0 (3)C1—C6—S1—O110.8 (2)
O5—C16—C17—C2236.7 (3)C5—C6—S1—O1−168.46 (15)
C13—C16—C17—C22−144.65 (18)C1—C6—S1—N1−102.14 (18)
O5—C16—C17—C18−142.2 (2)C5—C6—S1—N178.64 (16)
C13—C16—C17—C1836.5 (3)
D—H···AD—HH···AD···AD—H···A
C8—H8···O10.932.402.977 (3)120
C8—H8···O4i0.932.603.286 (2)131
C15—H15A···O20.962.032.824 (3)139
C15—H15A···S10.962.843.307 (2)111
C19—H19···O2ii0.932.643.388 (2)138
C20H15NO3S2Dx = 1.408 Mg m3
Mr = 381.45Cu Kα radiation, λ = 1.54178 Å
Orthorhombic, P212121Cell parameters from 9899 reflections
a = 8.9300 (2) Åθ = 4.7–72.4°
b = 10.8141 (3) ŵ = 2.85 mm1
c = 18.6398 (5) ÅT = 293 K
V = 1800.04 (8) Å3Block, colourless
Z = 40.25 × 0.20 × 0.15 mm
F(000) = 792
Bruker Kappa APEX3 CMOS diffractometer3538 independent reflections
Radiation source: micro-focus sealed tube3314 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
ω and φ scanθmax = 72.4°, θmin = 4.7°
Absorption correction: multi-scan (SADABS; Bruker, 2016)h = −10→11
Tmin = 0.599, Tmax = 0.746k = −13→13
25415 measured reflectionsl = −19→22
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.039w = 1/[σ2(Fo2) + (0.0632P)2 + 0.446P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.106(Δ/σ)max = 0.002
S = 1.06Δρmax = 0.24 e Å3
3538 reflectionsΔρmin = −0.38 e Å3
236 parametersAbsolute structure: Refined as an inversion twin.
0 restraintsAbsolute structure parameter: 0.03 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refined as a 2-component inversion twin.
xyzUiso*/Ueq
C10.9645 (4)0.1139 (3)0.89175 (17)0.0390 (6)
C20.8811 (4)0.2195 (3)0.8753 (2)0.0500 (8)
H20.87730.25080.82890.060*
C30.8044 (5)0.2755 (3)0.9311 (2)0.0595 (10)
H30.74770.34580.92180.071*
C40.8097 (5)0.2300 (4)0.9998 (3)0.0639 (11)
H40.75710.27031.03590.077*
C50.8917 (5)0.1255 (3)1.01619 (19)0.0537 (8)
H50.89360.09461.06270.064*
C60.9716 (4)0.0674 (3)0.96149 (16)0.0386 (6)
C71.0648 (4)−0.0418 (3)0.95980 (16)0.0386 (6)
C81.1175 (3)−0.0574 (3)0.89200 (15)0.0383 (6)
C91.0953 (4)−0.1171 (3)1.02446 (16)0.0441 (7)
C101.0808 (4)−0.2510 (3)1.02034 (18)0.0450 (7)
C111.0118 (4)−0.3236 (3)0.9675 (2)0.0516 (8)
H110.9682−0.29360.92570.062*
C121.0188 (6)−0.4502 (4)0.9878 (3)0.0834 (15)
H120.9795−0.51360.95980.100*
C131.0869 (6)−0.4699 (4)1.0506 (4)0.0863 (17)
H131.1005−0.54811.07030.104*
C141.2277 (4)−0.1503 (4)0.86485 (19)0.0513 (8)
H14A1.2427−0.13830.81430.077*
H14B1.3212−0.14010.88950.077*
H14C1.1899−0.23220.87320.077*
C151.2007 (5)0.3125 (4)0.7758 (2)0.0600 (10)
H151.10140.33570.76920.072*
C161.3106 (6)0.4008 (4)0.7866 (2)0.0718 (12)
H161.28480.48410.78730.086*
C171.4559 (6)0.3669 (5)0.7961 (2)0.0726 (14)
H171.52880.42700.80330.087*
C181.4952 (5)0.2442 (6)0.7951 (3)0.0783 (14)
H181.59490.22150.80110.094*
C191.3879 (5)0.1545 (4)0.7853 (2)0.0647 (10)
H191.41420.07130.78550.078*
C201.2414 (4)0.1891 (3)0.77510 (15)0.0438 (7)
N11.0537 (3)0.0363 (3)0.84821 (14)0.0412 (6)
O10.9748 (3)0.1284 (3)0.73280 (14)0.0634 (7)
O21.1698 (3)−0.0325 (3)0.73361 (13)0.0601 (7)
O31.1254 (4)−0.0666 (3)1.08138 (13)0.0700 (8)
S11.10413 (10)0.07464 (8)0.76447 (4)0.0452 (2)
S21.14511 (13)−0.33973 (11)1.09014 (6)0.0702 (3)
U11U22U33U12U13U23
C10.0334 (14)0.0344 (14)0.0491 (16)−0.0031 (12)−0.0043 (12)0.0011 (12)
C20.0415 (18)0.0382 (15)0.070 (2)−0.0011 (15)−0.0045 (16)0.0110 (15)
C30.056 (2)0.0360 (16)0.087 (3)0.0061 (16)−0.0090 (19)−0.0058 (18)
C40.060 (2)0.054 (2)0.077 (3)0.0106 (19)0.000 (2)−0.0211 (19)
C50.061 (2)0.0490 (17)0.0506 (17)0.0023 (18)0.0018 (17)−0.0108 (14)
C60.0402 (15)0.0315 (13)0.0440 (15)−0.0060 (13)−0.0057 (12)−0.0036 (12)
C70.0416 (16)0.0340 (14)0.0401 (14)−0.0023 (12)−0.0068 (12)−0.0029 (11)
C80.0354 (15)0.0352 (14)0.0445 (15)−0.0016 (13)−0.0072 (11)−0.0008 (11)
C90.0473 (17)0.0420 (15)0.0428 (15)−0.0018 (14)−0.0068 (13)0.0017 (13)
C100.0398 (17)0.0424 (16)0.0527 (18)0.0019 (14)0.0013 (14)0.0067 (14)
C110.052 (2)0.0382 (16)0.065 (2)−0.0033 (16)−0.0012 (17)−0.0038 (15)
C120.079 (3)0.043 (2)0.128 (5)−0.013 (2)0.021 (3)−0.013 (3)
C130.082 (3)0.050 (2)0.127 (4)0.020 (2)0.034 (3)0.038 (3)
C140.0507 (19)0.053 (2)0.0501 (17)0.0134 (17)−0.0032 (15)−0.0014 (15)
C150.059 (2)0.053 (2)0.068 (2)−0.0083 (17)0.0067 (18)0.0122 (18)
C160.089 (3)0.057 (2)0.070 (2)−0.022 (2)0.007 (2)0.003 (2)
C170.081 (3)0.084 (3)0.052 (2)−0.045 (3)0.0029 (19)−0.001 (2)
C180.052 (3)0.106 (4)0.076 (3)−0.020 (3)−0.004 (2)0.000 (3)
C190.049 (2)0.068 (2)0.078 (2)−0.002 (2)0.0010 (19)−0.005 (2)
C200.0480 (17)0.0508 (18)0.0327 (14)−0.0072 (15)−0.0005 (12)−0.0012 (13)
N10.0394 (14)0.0424 (14)0.0418 (13)0.0013 (12)−0.0022 (10)0.0064 (11)
O10.0593 (15)0.0759 (17)0.0551 (14)−0.0082 (14)−0.0233 (13)0.0150 (13)
O20.0798 (18)0.0567 (14)0.0438 (12)−0.0059 (13)0.0013 (13)−0.0136 (11)
O30.109 (2)0.0565 (14)0.0448 (13)−0.0037 (17)−0.0234 (14)−0.0046 (11)
S10.0493 (4)0.0498 (4)0.0366 (3)−0.0066 (3)−0.0083 (3)0.0014 (3)
S20.0630 (6)0.0727 (7)0.0750 (6)0.0103 (5)0.0035 (5)0.0337 (5)
C1—C61.395 (4)C12—C131.337 (8)
C1—C21.397 (4)C12—H120.9300
C1—N11.413 (4)C13—S21.672 (6)
C2—C31.385 (6)C13—H130.9300
C2—H20.9300C14—H14A0.9600
C3—C41.372 (6)C14—H14B0.9600
C3—H30.9300C14—H14C0.9600
C4—C51.381 (6)C15—C201.383 (5)
C4—H40.9300C15—C161.384 (6)
C5—C61.394 (5)C15—H150.9300
C5—H50.9300C16—C171.360 (8)
C6—C71.446 (4)C16—H160.9300
C7—C81.359 (4)C17—C181.373 (8)
C7—C91.480 (4)C17—H170.9300
C8—N11.421 (4)C18—C191.376 (6)
C8—C141.494 (5)C18—H180.9300
C9—O31.224 (4)C19—C201.374 (6)
C9—C101.455 (5)C19—H190.9300
C10—C111.402 (5)C20—S11.753 (3)
C10—S21.716 (3)N1—S11.677 (3)
C11—C121.421 (6)O1—S11.421 (3)
C11—H110.9300O2—S11.421 (3)
C6—C1—C2121.5 (3)C12—C13—H13123.4
C6—C1—N1107.2 (3)S2—C13—H13123.4
C2—C1—N1131.3 (3)C8—C14—H14A109.5
C3—C2—C1117.2 (3)C8—C14—H14B109.5
C3—C2—H2121.4H14A—C14—H14B109.5
C1—C2—H2121.4C8—C14—H14C109.5
C4—C3—C2121.8 (3)H14A—C14—H14C109.5
C4—C3—H3119.1H14B—C14—H14C109.5
C2—C3—H3119.1C20—C15—C16118.7 (4)
C3—C4—C5121.2 (4)C20—C15—H15120.6
C3—C4—H4119.4C16—C15—H15120.6
C5—C4—H4119.4C17—C16—C15120.6 (5)
C4—C5—C6118.6 (4)C17—C16—H16119.7
C4—C5—H5120.7C15—C16—H16119.7
C6—C5—H5120.7C16—C17—C18120.2 (4)
C5—C6—C1119.7 (3)C16—C17—H17119.9
C5—C6—C7132.8 (3)C18—C17—H17119.9
C1—C6—C7107.5 (3)C17—C18—C19120.4 (5)
C8—C7—C6108.7 (3)C17—C18—H18119.8
C8—C7—C9128.7 (3)C19—C18—H18119.8
C6—C7—C9122.5 (3)C20—C19—C18119.3 (4)
C7—C8—N1107.9 (3)C20—C19—H19120.4
C7—C8—C14128.8 (3)C18—C19—H19120.4
N1—C8—C14123.3 (3)C19—C20—C15120.8 (4)
O3—C9—C10120.6 (3)C19—C20—S1119.2 (3)
O3—C9—C7120.1 (3)C15—C20—S1119.9 (3)
C10—C9—C7119.2 (3)C1—N1—C8108.7 (2)
C11—C10—C9129.3 (3)C1—N1—S1122.6 (2)
C11—C10—S2111.5 (3)C8—N1—S1127.1 (2)
C9—C10—S2119.1 (3)O2—S1—O1120.08 (18)
C10—C11—C12109.5 (4)O2—S1—N1106.61 (15)
C10—C11—H11125.2O1—S1—N1105.64 (16)
C12—C11—H11125.2O2—S1—C20109.46 (17)
C13—C12—C11114.0 (5)O1—S1—C20109.02 (17)
C13—C12—H12123.0N1—S1—C20104.91 (14)
C11—C12—H12123.0C13—S2—C1091.9 (2)
C12—C13—S2113.2 (3)
C6—C1—C2—C3−0.7 (5)C20—C15—C16—C170.2 (7)
N1—C1—C2—C3180.0 (3)C15—C16—C17—C180.0 (7)
C1—C2—C3—C40.2 (6)C16—C17—C18—C19−0.7 (7)
C2—C3—C4—C5−0.3 (6)C17—C18—C19—C201.2 (7)
C3—C4—C5—C60.9 (6)C18—C19—C20—C15−1.1 (6)
C4—C5—C6—C1−1.4 (5)C18—C19—C20—S1−178.7 (3)
C4—C5—C6—C7−179.0 (3)C16—C15—C20—C190.4 (6)
C2—C1—C6—C51.3 (5)C16—C15—C20—S1178.0 (3)
N1—C1—C6—C5−179.2 (3)C6—C1—N1—C8−0.8 (3)
C2—C1—C6—C7179.4 (3)C2—C1—N1—C8178.6 (3)
N1—C1—C6—C7−1.0 (3)C6—C1—N1—S1−167.3 (2)
C5—C6—C7—C8−179.6 (4)C2—C1—N1—S112.1 (5)
C1—C6—C7—C82.6 (3)C7—C8—N1—C12.5 (3)
C5—C6—C7—C9−1.1 (6)C14—C8—N1—C1−175.2 (3)
C1—C6—C7—C9−178.9 (3)C7—C8—N1—S1168.2 (2)
C6—C7—C8—N1−3.1 (3)C14—C8—N1—S1−9.5 (4)
C9—C7—C8—N1178.5 (3)C1—N1—S1—O2−170.3 (3)
C6—C7—C8—C14174.4 (3)C8—N1—S1—O225.8 (3)
C9—C7—C8—C14−4.0 (6)C1—N1—S1—O1−41.5 (3)
C8—C7—C9—O3134.4 (4)C8—N1—S1—O1154.7 (3)
C6—C7—C9—O3−43.8 (5)C1—N1—S1—C2073.7 (3)
C8—C7—C9—C10−49.0 (5)C8—N1—S1—C20−90.2 (3)
C6—C7—C9—C10132.8 (3)C19—C20—S1—O2−28.5 (3)
O3—C9—C10—C11162.0 (4)C15—C20—S1—O2153.8 (3)
C7—C9—C10—C11−14.7 (6)C19—C20—S1—O1−161.7 (3)
O3—C9—C10—S2−14.0 (5)C15—C20—S1—O120.7 (3)
C7—C9—C10—S2169.4 (3)C19—C20—S1—N185.5 (3)
C9—C10—C11—C12−177.2 (4)C15—C20—S1—N1−92.1 (3)
S2—C10—C11—C12−1.0 (4)C12—C13—S2—C10−1.1 (4)
C10—C11—C12—C130.2 (6)C11—C10—S2—C131.2 (3)
C11—C12—C13—S20.7 (6)C9—C10—S2—C13177.8 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2···O10.932.392.954 (5)119
C2—H2···O2i0.932.653.394 (4)138
C14—H14A···O20.962.002.806 (4)140
C14—H14A···S10.962.773.261 (4)112
C14—H14B···S2ii0.962.933.822 (4)156
  9 in total

1.  Antifungal activity of venenatine, an indole alkaloid isolated from Alstonia venenata.

Authors:  U P Singh; B K Sarma; P K Mishra; A B Ray
Journal:  Folia Microbiol (Praha)       Date:  2000       Impact factor: 2.099

2.  2-Aryl tryptamines: selective high-affinity antagonists for the h5-HT2A receptor.

Authors:  G I Stevenson; A L Smith; S Lewis; S G Michie; J G Neduvelil; S Patel; R Marwood; S Patel; J L Castro
Journal:  Bioorg Med Chem Lett       Date:  2000-12-18       Impact factor: 2.823

3.  Synthesis and antitumor activity of substituted 3-(5-imidazo[2,1-b]thiazolylmethylene)-2-indolinones.

Authors:  A Andreani; M Granaiola; A Leoni; A Locatelli; R Morigi; M Rambaldi; G Giorgi; L Salvini; V Garaliene
Journal:  Anticancer Drug Des       Date:  2001 Apr-Jun

4.  Synthesis, antimicrobial and antifungal activity of a new class of spiro pyrrolidines.

Authors:  A Amal Raj; R Raghunathan; M R SrideviKumari; N Raman
Journal:  Bioorg Med Chem       Date:  2003-02-06       Impact factor: 3.641

5.  (1-Phenyl-sulfonyl-1H-indol-2-yl)(thio-phen-2-yl)methanone.

Authors:  C Kamalakumar; V Dhayalan; A K Mohanakrishnan; V Balasubramanian; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-26

6.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

Review 8.  Biomedical importance of indoles.

Authors:  Nagendra Kumar Kaushik; Neha Kaushik; Pankaj Attri; Naresh Kumar; Chung Hyeok Kim; Akhilesh Kumar Verma; Eun Ha Choi
Journal:  Molecules       Date:  2013-06-06       Impact factor: 4.411

9.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  9 in total

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