Literature DB >> 29248994

The phosphorelay signal transduction system in Candida glabrata: an in silico analysis.

Natalee Carapia-Minero1, Juan Arturo Castelán-Vega2, Néstor Octavio Pérez3, Aída Verónica Rodríguez-Tovar4.   

Abstract

Signaling systems allow microorganisms to sense and respond to different stimuli through the modification of gene expression. The phosphorelay signal transduction system in eukaryotes involves three proteins: a sensor protein, an intermediate protein and a response regulator, and requires the transfer of a phosphate group between two histidine-aspartic residues. The SLN1-YPD1-SSK1 system enables yeast to adapt to hyperosmotic stress through the activation of the HOG1-MAPK pathway. The genetic sequences available from Saccharomyces cerevisiae were used to identify orthologous sequences in Candida glabrata, and putative genes were identified and characterized by in silico assays. An interactome analysis was carried out with the complete genome of C. glabrata and the putative proteins of the phosphorelay signal transduction system. Next, we modeled the complex formed between the sensor protein CgSln1p and the intermediate CgYpd1p. Finally, phosphate transfer was examined by a molecular dynamic assay. Our in silico analysis showed that the putative proteins of the C. glabrata phosphorelay signal transduction system present the functional domains of histidine kinase, a downstream response regulator protein, and an intermediate histidine phosphotransfer protein. All the sequences are phylogenetically more related to S. cerevisiae than to C. albicans. The interactome suggests that the C. glabrata phosphorelay signal transduction system interacts with different proteins that regulate cell wall biosynthesis and responds to oxidative and osmotic stress the same way as similar systems in S. cerevisiae and C. albicans. Molecular dynamics simulations showed complex formation between the response regulator domain of histidine kinase CgSln1 and intermediate protein CgYpd1 in the presence of a phosphate group and interactions between the aspartic residue and the histidine residue. Overall, our research showed that C. glabrata harbors a functional SLN1-YPD1-SSK1 phosphorelay system.

Entities:  

Keywords:  C. glabrata; Histidine phosphotransferase; Phosphorelay signal transduction system; Response regulators domains

Mesh:

Substances:

Year:  2017        PMID: 29248994     DOI: 10.1007/s00894-017-3545-z

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  87 in total

Review 1.  Histidine kinases and response regulator proteins in two-component signaling systems.

Authors:  A H West; A M Stock
Journal:  Trends Biochem Sci       Date:  2001-06       Impact factor: 13.807

2.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

3.  How well can the accuracy of comparative protein structure models be predicted?

Authors:  David Eramian; Narayanan Eswar; Min-Yi Shen; Andrej Sali
Journal:  Protein Sci       Date:  2008-10-01       Impact factor: 6.725

4.  Signal processing by the HOG MAP kinase pathway.

Authors:  Pascal Hersen; Megan N McClean; L Mahadevan; Sharad Ramanathan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-14       Impact factor: 11.205

5.  ANOLEA: a www server to assess protein structures.

Authors:  F Melo; D Devos; E Depiereux; E Feytmans
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  1997

Review 6.  Histidine kinases keep fungi safe and vigorous.

Authors:  Dongmei Li; Orlando A Agrellos; Richard Calderone
Journal:  Curr Opin Microbiol       Date:  2010-06-09       Impact factor: 7.934

7.  Ssk1p response regulator binding surface on histidine-containing phosphotransfer protein Ypd1p.

Authors:  Stace W Porter; Qingping Xu; Ann H West
Journal:  Eukaryot Cell       Date:  2003-02

8.  Kinetic analysis of YPD1-dependent phosphotransfer reactions in the yeast osmoregulatory phosphorelay system.

Authors:  Fabiola Janiak-Spens; Paul F Cook; Ann H West
Journal:  Biochemistry       Date:  2005-01-11       Impact factor: 3.162

9.  Probiotics restore bowel flora and improve liver enzymes in human alcohol-induced liver injury: a pilot study.

Authors:  Irina A Kirpich; Natalia V Solovieva; Svetlana N Leikhter; Natalia A Shidakova; Oxsana V Lebedeva; Pavel I Sidorov; Tatjana A Bazhukova; Andrej G Soloviev; Shirish S Barve; Craig J McClain; Matt Cave
Journal:  Alcohol       Date:  2008-12       Impact factor: 2.405

10.  The SWISS-MODEL Repository and associated resources.

Authors:  Florian Kiefer; Konstantin Arnold; Michael Künzli; Lorenza Bordoli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2008-10-18       Impact factor: 16.971

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  1 in total

Review 1.  Oxidative stress response pathways in fungi.

Authors:  Hajar Yaakoub; Sara Mina; Alphonse Calenda; Jean-Philippe Bouchara; Nicolas Papon
Journal:  Cell Mol Life Sci       Date:  2022-06-01       Impact factor: 9.261

  1 in total

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