| Literature DB >> 29247217 |
Christina Blut1, Alessandro Crespi2, Danielle Mersch3, Laurent Keller4, Linlin Zhao5, Markus Kollmann5, Benjamin Schellscheidt6, Carsten Fülber6, Martin Beye7.
Abstract
Honeybees form societies in which thousands of members integrate their behaviours to act as a single functional unit. We have little knowledge on how the collaborative features are regulated by workers' activities because we lack methods that enable collection of simultaneous and continuous behavioural information for each worker bee. In this study, we introduce the Bee Behavioral Annotation System (BBAS), which enables the automated detection of bees' behaviours in small observation hives. Continuous information on position and orientation were obtained by marking worker bees with 2D barcodes in a small observation hive. We computed behavioural and social features from the tracking information to train a behaviour classifier for encounter behaviours (interaction of workers via antennation) using a machine learning-based system. The classifier correctly detected 93% of the encounter behaviours in a group of bees, whereas 13% of the falsely classified behaviours were unrelated to encounter behaviours. The possibility of building accurate classifiers for automatically annotating behaviours may allow for the examination of individual behaviours of worker bees in the social environments of small observation hives. We envisage that BBAS will be a powerful tool for detecting the effects of experimental manipulation of social attributes and sub-lethal effects of pesticides on behaviour.Entities:
Mesh:
Year: 2017 PMID: 29247217 PMCID: PMC5732155 DOI: 10.1038/s41598-017-17863-4
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Setup of the tracking device. (a) The tracking device consisted of a high-resolution camera (Cam), an infrared lighting system (LS) and the observation hive holding one “Deutsch Normal” comb (OH). The entire device was placed under a cardboard box in a laboratory. (b) Examples of 2D barcodes from the AprilTags library. (c) Bee marked with a tag bearing a 2D barcode. (d) Encounter behaviour between two worker bees defined by the head to head orientation and the antennal contact of the interacting bees. This specific encounter shown is trophallaxis.
Detection rate and positional accuracy of the tracking device.
| No. of tracked tags | No. of frames analysed (sequence duration)(3) | Detection rate(4) (%) | x/y position accuracy(5) (mm ± SD) | Orientation accuracy(5) (degrees ± SD) | ||
|---|---|---|---|---|---|---|
| Tags glued to a comb | immobile | 100 | 1200 (5 min) | 99.9 | 0.04(6) ± 0.03 | 1.5 ± 0.8 |
| Tags glued to a bee | resting(1) | 10 | 240 (1 min) | 98.2 | n.d.(7) | n.d.(7) |
| moving(2) | 30 | 240 (1 min) | 90.8 | n.d.(7) | n.d.(7) |
(1)Bee sits in one position without moving for ≥ 5 seconds.
(2)Bee walks across the comb without interacting with other bees, inspecting cells or performing any other task.
(3)Duration of the tracking.
(4)The percentage of frames in which tags were detected.
(5)Accuracy of the tracking device for the detected x/y centre position and the orientation.
(6)i.e., ~0.003% of an Apis mellifera worker size.
(7)Not determined (n.d.) because changes could result from the bees’ behaviours.
The accuracy of the trained ‘encounter classifier’ estimated through cross-validation on the labelled frames for EBs and NEBs.
| Automatically detected by the ‘encounter classifier’ | |||
|---|---|---|---|
| Encounter (EB*)(6) (±SD) (%)(2) | Non-encounter (NEB*)(6) (±SD) (%)(2) | ||
| Manually annotated(1) | Encounter (EB) | 77.3 (±1.3)(3) | 22.7 (±1.3)(5) |
| Non-encounter (NEB) | 26.3 (±1.3)(4) | 73.7 (±1.2)(3) | |
(1)The manually labelled high-confidence behaviours (EBs and NEBs) used to train the classifier.
(2)Mean estimates with standard deviation (SD) of the 10 rounds of cross-validation. Estimate values are given as percentage of frames correctly or falsely classified as EBs or NEBs using the classifier.
(3)Frames correctly classified as EB or NEB (true positives).
(4)NEB frames falsely classified as EB* (false positives).
(5)EB frames falsely classified as NEB* (false negatives).
(6)Asterisks indicate automatically classified behaviours.
Comparison of manually annotated behaviours (EBs and NEBs) and automatically classified behaviours (EBs* and NEBs*).
| Automatically detected by the ‘encounter classifier’ | |||
|---|---|---|---|
| Encounter (EB*) (%) | Non-encounter (NEB*) (%) | ||
| Training set(1) | Encounter (EB) | 100 | 0 |
| Non-encounter (NEB) | 0 | 100 | |
| Testing set(2) | Encounter (EB) | 93 | 7 |
| Non-encounter (NEB) | 28(3) | n.d.(4) | |
(1)The manually labelled high-confidence behaviours (EBs and NEBs) used to train the classifier
(2)Manually annotated behaviours not used to train the classifier
(3)Automatically detected behaviours falsely classified as EB* by the ‘encounter classifier’
(4)not determined (n.d.) because we did not manually annotate NEBs for the testing set and thus could not determine the automatic classification rate.
Frequency and duration of the different manually detected encounter behaviours.
| Encounter behaviour | No. of encounters | Relative proportion (%) | Min. duration (sec) | Max. duration (sec) | Median (sec) | 75% percentile (sec) |
|---|---|---|---|---|---|---|
| Antennation | 377 | 57 | 0.25 | 9.25 | 1.8 | 2.5 |
| Offering | 172 | 26 | 0.25 | 4.5 | 1 | 1.9 |
| Begging | 59 | 9 | 0.75 | 6.75 | 2 | 3 |
| Trophallaxis | 50 | 8 | 5 | 30.5 | 8.4 | 12.9 |
Figure 2Number of encounter behaviours observed for the different duration of encounter behaviours from the four behaviour classes. (a) Trophallaxis, (b) Begging, (c) Offering, (d) Antennation.
The classification of trophallaxis behaviours of manually detected and automatically detected encounter behaviours using the duration threshold of ≥ 5 seconds.
| Manually classified by duration among the 658 manually detected behaviours(1) | Automatically classified by duration among the EBs* from the testing set(2) | |||
|---|---|---|---|---|
| Trophallaxis (%)(3) | Non-trophallaxis (%)(3) | Trophallaxis* (%)(4) | Non-trophallaxis* (%)(4) | |
| Trophallaxis(5) | 100 | 0 | 100 | 0 |
| Non-trophallaxis(5) | 8 | 92 | 28 | 72 |
(1)We manually classified trophallaxis behaviours from the 658 manually detected encounter behaviours using the duration threshold of ≥ 5 seconds.
(2)We applied the ‘encounter classifier’ with the duration threshold of ≥ 5 seconds to the 43 manually annotated encounter behaviours not used for training.
(3)Percentage of the manually detected trophallaxis and non-trophallaxis behaviours that were manually classified as trophallaxis using the duration threshold of ≥ 5 seconds.
(4)Percentage of the manually annotated trophallaxis and non-trophallaxis behaviours from the testing set that were automatically classified as trophallaxis* and non-trophallaxis* (asterisks indicate automatic classification) using the duration threshold of ≥ 5 seconds.
(5)Trophallaxis and non-trophallaxis behaviours that were manually annotated by the observer.