| Literature DB >> 29234286 |
Sheng Li1,2,3, Xiaoping Liu3, Tongzu Liu1, Xiangyu Meng3, Xiaohong Yin3, Cheng Fang3, Di Huang3, Yue Cao3, Hong Weng1, Xiantao Zeng1,3, Xinghuan Wang1,3.
Abstract
Objective: To identify candidate biomarkers correlated with clinical prognosis of patients with bladder cancer (BC).Entities:
Keywords: WGCNA; biomarkers; bladder cancer
Year: 2017 PMID: 29234286 PMCID: PMC5712410 DOI: 10.3389/fphys.2017.00947
Source DB: PubMed Journal: Front Physiol ISSN: 1664-042X Impact factor: 4.566
Figure 1(A) Analysis of network topology for various soft-thresholding powers. The left panel shows the scale-free fit index (y-axis) as a function of the soft-thresholding power (x-axis). The right panel displays the mean connectivity (degree, y-axis) as a function of the soft-thresholding power (x-axis). (B) Clustering dendrogram of genes, with dissimilarity based on topological overlap, together with assigned module colors.
GO oncology analysis of top 50 hub genes.
| Mitotic sister chromatid segregation | <0.001 | CENPA; CENPE; CENPF; KIF2C; UBE2C; CDCA5; KIF4A; NUSAP1; CDCA8; CEP55; NCAPG; BUB1B; PRC1; AURKB; KIF23; ESPL1 |
| Mitotic cell cycle | <0.001 | CDKN3; CENPA; CENPE; CENPF; KIF2C; UBE2C; CIT; CDCA5; CDCA2; FAP; TPX2; FOXM1; KIF4A; ASPM; WDR62; NUSAP1; CDCA8; CEP55; MCM10; KIF15; SPC25; NCAPG; AURKA; BUB1B; TOP2A; CDCA3; PRC1; CCNB2; AURKB; KIF23; ESPL1; MELK; CDC25B |
| Nuclear division | <0.001 | CENPA; CENPE; CENPF; KIF2C; UBE2C; CIT; CDCA5; CDCA2; TPX2; KIF4A; ASPM; NUSAP1; CDCA8; CEP55; KIF15; SPC25; NCAPG; AURKA; BUB1B; TOP2A; CDCA3; RAD54L; PRC1; CCNB2; AURKB; KIF23; ESPL1; CDC25B |
| Sister chromatid segregation | <0.001 | CENPA; CENPE; CENPF; KIF2C; UBE2C; CDCA5; KIF4A; NUSAP1; CDCA8; CEP55; SPC25; NCAPG; BUB1B; TOP2A; PRC1; AURKB; KIF23; ESPL1 |
| Cell cycle | <0.001 | CDKN3; CENPA; CENPE; CENPF; KIF2C; UBE2C; CIT; CDCA5; CDCA2; FAP; TPX2; FOXM1; KIF4A; ASPM; WDR62; NUSAP1; CDCA8; CEP55; MCM10; KIF15; SPC25; NCAPG; AURKA; BUB1B; TOP2A; CDCA3; RAD54L; PRC1; CCNB2; AURKB; KIF23; ESPL1; MELK; CDC25B |
| Chromosome segregation | <0.001 | CENPA; CENPE; CENPF; KIF2C; UBE2C; CDCA5; CDCA2; KIF4A; NUSAP1; CDCA8; CEP55; SPC25; NCAPG; BUB1B; TOP2A; PRC1; AURKB; KIF23; ESPL1 |
| Mitotic nuclear division | <0.001 | CENPA; CENPE; CENPF; KIF2C; UBE2C; CIT; CDCA5; CDCA2; TPX2; KIF4A; ASPM; NUSAP1; CDCA8; CEP55; KIF15; SPC25; NCAPG; AURKA; BUB1B; CDCA3; PRC1; CCNB2; AURKB; KIF23; ESPL1; CDC25B |
| Cell cycle process | <0.001 | CDKN3; CENPA; CENPE; CENPF; KIF2C; UBE2C; CIT; CDCA5; CDCA2; FAP; TPX2; FOXM1; KIF4A; ASPM; WDR62; NUSAP1; CDCA8; CEP55; MCM10; KIF15; SPC25; NCAPG; AURKA;BUB1B; TOP2A; CDCA3; RAD54L; PRC1; CCNB2; AURKB; KIF23; ESPL1; MELK; CDC25B |
| Organelle fission | <0.001 | CENPA; CENPE; CENPF; KIF2C; UBE2C; CIT; CDCA5; CDCA2; TPX2; KIF4A; ASPM; NUSAP1;CDCA8; CEP55; KIF15; SPC25; NCAPG; AURKA; BUB1B; TOP2A; CDCA3; RAD54L; PRC1;CCNB2;AURKB;KIF23;ESPL1;CDC25B |
| Cell division | <0.001 | CENPA; CENPE; CENPF; KIF2C; UBE2C; CIT; CDCA5; CDCA2; TPX2; KIF4A; ASPM; NUSAP1; CDCA8; CEP55; SPC25; NCAPG; AURKA; BUB1B; TOP2A; CDCA3; PRC1; CCNB2; AURKB; KIF23; ESPL1; CDC25B |
KEGG pathway analysis of top 50 hub genes.
| Cell cycle | 8.73E-05 | BUB1B; CCNB2; ESPL1; CDC25B |
| Oocyte meiosis | 0.001594 | AURKA; CCNB2; ESPL1 |
| MicroRNAs in cancer | 0.003108 | CDCA5; KIF23; CDC25B |
| Protein digestion and absorption | 0.01411 | COL1A1; COL5A2 |
| Progesterone-mediated oocyte maturation | 0.014713 | CCNB2; CDC25B |
Figure 2Protein-protein interaction network of hub genes. The edge width was proportional to the score of protein-protein interaction based on the STRING database.
Survival of hub genes, high expression of MMP11, COL5A2, CDC25B, TOP2A, CENPF, CDCA3, TK1, TPX2, CDCA8, AEBP1, and FOXM1 were correlated with better overall survival of patients with bladder cancer.
| MMP11 | 3.19 | 1.99 | 5.1 | 1.30E-06 |
| COL5A2 | 2.65 | 1.64 | 4.28 | 6.55E-05 |
| CDC25B | 2.58 | 1.49 | 4.45 | 0.0006656 |
| TOP2A | 2.46 | 1.44 | 4.18 | 9.57E-04 |
| CENPF | 2.42 | 1.4 | 4.19 | 0.0015458 |
| CDCA3 | 2.5 | 1.39 | 4.49 | 0.0021009 |
| TK1 | 2.05 | 1.29 | 3.25 | 0.002275 |
| TPX2 | 1.87 | 1.25 | 2.61 | 0.0024666 |
| CDCA8 | 1.99 | 1.26 | 3.12 | 0.0029615 |
| AEBP1 | 1.65 | 1.1 | 2.47 | 0.0148293 |
| FOXM1 | 2.27 | 1.09 | 4.74 | 0.0293848 |