Literature DB >> 29225552

A GRAPH PARTITIONING APPROACH TO PREDICTING PATTERNS IN LATERAL INHIBITION SYSTEMS.

Ana S Rufino Ferreira1, Murat Arcak1.   

Abstract

We analyze spatial patterns on networks of cells where adjacent cells inhibit each other through contact signaling. We represent the network as a graph where each vertex represents the dynamics of identical individual cells and where graph edges represent cell-to-cell signaling. To predict steady-state patterns we find equitable partitions of the graph vertices and assign them into disjoint classes. We then use results from monotone systems theory to prove the existence of patterns that are structured in such a way that all the cells in the same class have the same final fate. To study the stability properties of these patterns, we rely on the graph partition to perform a block decomposition of the system. Then, to guarantee stability, we provide a small-gain type criterion that depends on the input-output properties of each cell in the reduced system. Finally, we discuss pattern formation in stochastic models. With the help of a modal decomposition we show that noise can enhance the parameter region where patterning occurs.

Entities:  

Keywords:  92C15; 93A15; 93C10; developmental biology; large scale systems; nonlinear systems; pattern formation

Year:  2013        PMID: 29225552      PMCID: PMC5722231          DOI: 10.1137/130910142

Source DB:  PubMed          Journal:  SIAM J Appl Dyn Syst        ISSN: 1536-0040            Impact factor:   2.316


  9 in total

1.  Pattern formation in discrete cell lattices.

Authors:  E Plahte
Journal:  J Math Biol       Date:  2001-11       Impact factor: 2.259

2.  Stochastic Turing patterns in the Brusselator model.

Authors:  Tommaso Biancalani; Duccio Fanelli; Francesca Di Patti
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-04-27

3.  Symbolic reachable set computation of piecewise affine hybrid automata and its application to biological modelling: Delta-Notch protein signalling.

Authors:  R Ghosh; C Tomlin
Journal:  Syst Biol (Stevenage)       Date:  2004-06

Review 4.  Microcontact printing of living bacteria arrays with cellular resolution.

Authors:  Luping Xu; Lydia Robert; Qi Ouyang; François Taddei; Yong Chen; Ariel B Lindner; Damien Baigl
Journal:  Nano Lett       Date:  2007-06-22       Impact factor: 11.189

5.  Fluctuation-driven Turing patterns.

Authors:  Thomas Butler; Nigel Goldenfeld
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-07-11

6.  Pattern formation by lateral inhibition with feedback: a mathematical model of delta-notch intercellular signalling.

Authors:  J R Collier; N A Monk; P K Maini; J H Lewis
Journal:  J Theor Biol       Date:  1996-12-21       Impact factor: 2.691

7.  A theory of biological pattern formation.

Authors:  A Gierer; H Meinhardt
Journal:  Kybernetik       Date:  1972-12

8.  Effect of beta-lactam antibiotics on bacterial cell growth rate.

Authors:  G N Rolinson
Journal:  J Gen Microbiol       Date:  1980-10

9.  Cis-interactions between Notch and Delta generate mutually exclusive signalling states.

Authors:  David Sprinzak; Amit Lakhanpal; Lauren Lebon; Leah A Santat; Michelle E Fontes; Graham A Anderson; Jordi Garcia-Ojalvo; Michael B Elowitz
Journal:  Nature       Date:  2010-04-25       Impact factor: 49.962

  9 in total
  3 in total

1.  Pattern Formation over Multigraphs.

Authors:  Andras Gyorgy; Murat Arcak
Journal:  IEEE Trans Netw Sci Eng       Date:  2017-07-21

2.  A Compartmental Lateral Inhibition System to Generate Contrasting Patterns.

Authors:  Ana S Rufino Ferreira; Justin Hsia; Murat Arcak
Journal:  IEEE Life Sci Lett       Date:  2015-06-16

3.  Designing Spatially Distributed Gene Regulatory Networks To Elicit Contrasting Patterns.

Authors:  Mika Tei; Melinda Liu Perkins; Justin Hsia; Murat Arcak; Adam Paul Arkin
Journal:  ACS Synth Biol       Date:  2018-12-24       Impact factor: 5.110

  3 in total

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