Literature DB >> 29225511

The Crystalline Sponge Method: A Solvent-Based Strategy to Facilitate Noncovalent Ordered Trapping of Solid and Liquid Organic Compounds.

Timothy R Ramadhar1, Shao-Liang Zheng2, Yu-Sheng Chen3, Jon Clardy1.   

Abstract

A strategy that leverages solvent effects to noncovalently trap solid and unstable liquid organic compounds within a crystalline sponge ({[(ZnI2)3(tris(4-pyridyl)-1,3,5-triazine)2]·x(CHCl3)}n) in a simple, mild, and efficient fashion for target molecule structure determination via X-ray diffraction is disclosed. Host-guest structures were obtained using third-generation synchrotron radiation, and new beamline hardware allowed rapid data collection in ~5-24 minutes. This is 40-90% faster than previously reported crystalline sponge synchrotron datasets collected by us, and approximately a 150-720-fold decrease in time versus using a typical in-house diffractometer, effectively enabling the potential for high-throughput analysis. The new target molecule inclusion method using methyl tert-butyl ether (MTBE) solvent was demonstrated by trapping (E)-stilbene, vanillin, 4-(trifluoromethyl)phenyl azide, and (+)-artemisinin (an antimalarial drug). The potential of guests to maximize intermolecular interactions with the crystalline sponge framework at the expense of attenuating intramolecular interactions (e.g., π-conjugation) was observed for (E)-stilbene. Trapping of vanillin and (+)-artemisinin elicited single-crystal-to-single-crystal transformations where space group symmetry reduced from C2/c to P1̄ and C2, respectively, and the absolute configuration of (+)-artemisinin was determined through anomalous dispersion.

Entities:  

Year:  2017        PMID: 29225511      PMCID: PMC5716803          DOI: 10.1039/C7CE00885F

Source DB:  PubMed          Journal:  CrystEngComm        ISSN: 1466-8033            Impact factor:   3.545


  26 in total

1.  The catalytic Z to E isomerization of stilbenes in a photosensitizing porous coordination network.

Authors:  Kazuaki Ohara; Yasuhide Inokuma; Makoto Fujita
Journal:  Angew Chem Int Ed Engl       Date:  2010-07-26       Impact factor: 15.336

2.  Preparation and guest-uptake protocol for a porous complex useful for 'crystal-free' crystallography.

Authors:  Yasuhide Inokuma; Shota Yoshioka; Junko Ariyoshi; Tatsuhiko Arai; Makoto Fujita
Journal:  Nat Protoc       Date:  2014-01-09       Impact factor: 13.491

3.  Finding a New Crystalline Sponge from a Crystallographic Database.

Authors:  Yasuhide Inokuma; Kazuki Matsumura; Shota Yoshioka; Makoto Fujita
Journal:  Chem Asian J       Date:  2016-12-15

4.  X-ray Structure Analysis of Ozonides by the Crystalline Sponge Method.

Authors:  Shota Yoshioka; Yasuhide Inokuma; Vincent Duplan; Ritesh Dubey; Makoto Fujita
Journal:  J Am Chem Soc       Date:  2016-08-08       Impact factor: 15.419

Review 5.  Vanillin-bioconversion and bioengineering of the most popular plant flavor and its de novo biosynthesis in the vanilla orchid.

Authors:  Nethaji J Gallage; Birger Lindberg Møller
Journal:  Mol Plant       Date:  2014-12-11       Impact factor: 13.164

6.  Organic azides: an exploding diversity of a unique class of compounds.

Authors:  Stefan Bräse; Carmen Gil; Kerstin Knepper; Viktor Zimmermann
Journal:  Angew Chem Int Ed Engl       Date:  2005-08-19       Impact factor: 15.336

7.  Determination of absolute structure using Bayesian statistics on Bijvoet differences.

Authors:  Rob W W Hooft; Leo H Straver; Anthony L Spek
Journal:  J Appl Crystallogr       Date:  2008-01-16       Impact factor: 3.304

8.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

10.  The crystalline sponge method updated.

Authors:  Manabu Hoshino; Anupam Khutia; Hongzhu Xing; Yasuhide Inokuma; Makoto Fujita
Journal:  IUCrJ       Date:  2016-02-12       Impact factor: 4.769

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  2 in total

1.  A high throughput screening method for the nano-crystallization of salts of organic cations.

Authors:  Philipp P Nievergelt; Martin Babor; Jan Čejka; Bernhard Spingler
Journal:  Chem Sci       Date:  2018-03-12       Impact factor: 9.825

Review 2.  Application of Crystalline Matrices for the Structural Determination of Organic Molecules.

Authors:  Ashley D Cardenal; Timothy R Ramadhar
Journal:  ACS Cent Sci       Date:  2021-02-17       Impact factor: 14.553

  2 in total

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