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Literature DB >> 29220033

Challenges and recommendations for epigenomics in precision health.

Ava C Carter¹, Howard Y Chang¹, George Church², Ashley Dombkowski³, Joseph R Ecker⁴, Elad Gil⁵, Paul G Giresi⁶, Henry Greely⁷, William J Greenleaf^1,8, Nir Hacohen⁹, Chuan He¹⁰, David Hill¹¹, Justin Ko¹², Isaac Kohane¹³, Anshul Kundaje¹⁴, Megan Palmer¹⁵, Michael P Snyder^1,8, Joyce Tung¹⁶, Alexander Urban^1,17, Marc Vidal¹¹, Wing Wong^1,18.

Abstract

Entities: Chemical Disease Gene Species

Mesh：

Year: 2017 PMID： 29220033 PMCID： PMC5821229 DOI： 10.1038/nbt.4030

Source DB: PubMed Journal: Nat Biotechnol ISSN： 1087-0156 Impact factor: 54.908

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27 in total

1. Synthetic spike-in standards for RNA-seq experiments.

Authors: Lichun Jiang; Felix Schlesinger; Carrie A Davis; Yu Zhang; Renhua Li; Marc Salit; Thomas R Gingeras; Brian Oliver
Journal: Genome Res Date: 2011-08-04 Impact factor: 9.043

2. Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin.

Authors: Matthew W Snyder; Martin Kircher; Andrew J Hill; Riza M Daza; Jay Shendure
Journal: Cell Date: 2016-01-14 Impact factor: 41.582

3. Non-invasive prenatal measurement of the fetal genome.

Authors: H Christina Fan; Wei Gu; Jianbin Wang; Yair J Blumenfeld; Yasser Y El-Sayed; Stephen R Quake
Journal: Nature Date: 2012-07-19 Impact factor: 49.962

Review 4. Naming 'junk': human non-protein coding RNA (ncRNA) gene nomenclature.

Authors: Mathew W Wright; Elspeth A Bruford
Journal: Hum Genomics Date: 2011-01 Impact factor: 4.639

5. Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing.

Authors: Andrew Adey; Jay Shendure
Journal: Genome Res Date: 2012-03-30 Impact factor: 9.043

Review 6. Epigenetics of discordant monozygotic twins: implications for disease.

Authors: Juan E Castillo-Fernandez; Tim D Spector; Jordana T Bell
Journal: Genome Med Date: 2014-07-31 Impact factor: 11.117

7. DNA methylation-based measures of biological age: meta-analysis predicting time to death.

Authors: Brian H Chen; Riccardo E Marioni; Elena Colicino; Marjolein J Peters; Cavin K Ward-Caviness; Pei-Chien Tsai; Nicholas S Roetker; Allan C Just; Ellen W Demerath; Weihua Guan; Jan Bressler; Myriam Fornage; Stephanie Studenski; Amy R Vandiver; Ann Zenobia Moore; Toshiko Tanaka; Douglas P Kiel; Liming Liang; Pantel Vokonas; Joel Schwartz; Kathryn L Lunetta; Joanne M Murabito; Stefania Bandinelli; Dena G Hernandez; David Melzer; Michael Nalls; Luke C Pilling; Timothy R Price; Andrew B Singleton; Christian Gieger; Rolf Holle; Anja Kretschmer; Florian Kronenberg; Sonja Kunze; Jakob Linseisen; Christine Meisinger; Wolfgang Rathmann; Melanie Waldenberger; Peter M Visscher; Sonia Shah; Naomi R Wray; Allan F McRae; Oscar H Franco; Albert Hofman; André G Uitterlinden; Devin Absher; Themistocles Assimes; Morgan E Levine; Ake T Lu; Philip S Tsao; Lifang Hou; JoAnn E Manson; Cara L Carty; Andrea Z LaCroix; Alexander P Reiner; Tim D Spector; Andrew P Feinberg; Daniel Levy; Andrea Baccarelli; Joyce van Meurs; Jordana T Bell; Annette Peters; Ian J Deary; James S Pankow; Luigi Ferrucci; Steve Horvath
Journal: Aging (Albany NY) Date: 2016-09-28 Impact factor: 5.682

Review 8. High-throughput sequencing for biology and medicine.

Authors: Wendy Weijia Soon; Manoj Hariharan; Michael P Snyder
Journal: Mol Syst Biol Date: 2013 Impact factor: 11.429

9. Integrative analysis of 111 reference human epigenomes.

Authors: Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi-Moussavi; Pouya Kheradpour; Zhizhuo Zhang; Jianrong Wang; Michael J Ziller; Viren Amin; John W Whitaker; Matthew D Schultz; Lucas D Ward; Abhishek Sarkar; Gerald Quon; Richard S Sandstrom; Matthew L Eaton; Yi-Chieh Wu; Andreas R Pfenning; Xinchen Wang; Melina Claussnitzer; Yaping Liu; Cristian Coarfa; R Alan Harris; Noam Shoresh; Charles B Epstein; Elizabeta Gjoneska; Danny Leung; Wei Xie; R David Hawkins; Ryan Lister; Chibo Hong; Philippe Gascard; Andrew J Mungall; Richard Moore; Eric Chuah; Angela Tam; Theresa K Canfield; R Scott Hansen; Rajinder Kaul; Peter J Sabo; Mukul S Bansal; Annaick Carles; Jesse R Dixon; Kai-How Farh; Soheil Feizi; Rosa Karlic; Ah-Ram Kim; Ashwinikumar Kulkarni; Daofeng Li; Rebecca Lowdon; GiNell Elliott; Tim R Mercer; Shane J Neph; Vitor Onuchic; Paz Polak; Nisha Rajagopal; Pradipta Ray; Richard C Sallari; Kyle T Siebenthall; Nicholas A Sinnott-Armstrong; Michael Stevens; Robert E Thurman; Jie Wu; Bo Zhang; Xin Zhou; Arthur E Beaudet; Laurie A Boyer; Philip L De Jager; Peggy J Farnham; Susan J Fisher; David Haussler; Steven J M Jones; Wei Li; Marco A Marra; Michael T McManus; Shamil Sunyaev; James A Thomson; Thea D Tlsty; Li-Huei Tsai; Wei Wang; Robert A Waterland; Michael Q Zhang; Lisa H Chadwick; Bradley E Bernstein; Joseph F Costello; Joseph R Ecker; Martin Hirst; Alexander Meissner; Aleksandar Milosavljevic; Bing Ren; John A Stamatoyannopoulos; Ting Wang; Manolis Kellis
Journal: Nature Date: 2015-02-19 Impact factor: 69.504

Review 10. A review of the new HGNC gene family resource.

Authors: Kristian A Gray; Ruth L Seal; Susan Tweedie; Mathew W Wright; Elspeth A Bruford
Journal: Hum Genomics Date: 2016-02-03 Impact factor: 4.639

11 in total

Review 1. Molecular Transducers of Physical Activity Consortium (MoTrPAC): Mapping the Dynamic Responses to Exercise.

Authors: James A Sanford; Christopher D Nogiec; Malene E Lindholm; Joshua N Adkins; David Amar; Surendra Dasari; Jonelle K Drugan; Facundo M Fernández; Shlomit Radom-Aizik; Simon Schenk; Michael P Snyder; Russell P Tracy; Patrick Vanderboom; Scott Trappe; Martin J Walsh
Journal: Cell Date: 2020-06-25 Impact factor: 41.582

Review 2. Making Sense of the Epigenome Using Data Integration Approaches.

Authors: Emma Cazaly; Joseph Saad; Wenyu Wang; Caroline Heckman; Miina Ollikainen; Jing Tang
Journal: Front Pharmacol Date: 2019-02-19 Impact factor: 5.810

Review 3. Points-to-consider on the return of results in epigenetic research.

Authors: Stephanie O M Dyke; Katie M Saulnier; Charles Dupras; Amy P Webster; Karen Maschke; Mark Rothstein; Reiner Siebert; Jörn Walter; Stephan Beck; Tomi Pastinen; Yann Joly
Journal: Genome Med Date: 2019-05-23 Impact factor: 11.117

Review 4. DNA methylation aging clocks: challenges and recommendations.

Authors: Christopher G Bell; Robert Lowe; Peter D Adams; Andrea A Baccarelli; Stephan Beck; Jordana T Bell; Brock C Christensen; Vadim N Gladyshev; Bastiaan T Heijmans; Steve Horvath; Trey Ideker; Jean-Pierre J Issa; Karl T Kelsey; Riccardo E Marioni; Wolf Reik; Caroline L Relton; Leonard C Schalkwyk; Andrew E Teschendorff; Wolfgang Wagner; Kang Zhang; Vardhman K Rakyan
Journal: Genome Biol Date: 2019-11-25 Impact factor: 13.583

Review 5. Omics Biomarkers in Obesity: Novel Etiological Insights and Targets for Precision Prevention.

Authors: Krasimira Aleksandrova; Caue Egea Rodrigues; Anna Floegel; Wolfgang Ahrens
Journal: Curr Obes Rep Date: 2020-09

6. Personal Genome Project UK (PGP-UK): a research and citizen science hybrid project in support of personalized medicine.

Authors:
Journal: BMC Med Genomics Date: 2018-11-27 Impact factor: 3.063

Review 7. Epigenetics and gestational diabetes: a review of epigenetic epidemiology studies and their use to explore epigenetic mediation and improve prediction.

Authors: Hannah R Elliott; Gemma C Sharp; Caroline L Relton; Deborah A Lawlor
Journal: Diabetologia Date: 2019-10-17 Impact factor: 10.122