Literature DB >> 29217589

Cohesin: building loops, but not compartments.

Judith Hi Haarhuis1, Benjamin D Rowland1.   

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Year:  2017        PMID： 29217589      PMCID： PMC5730885          DOI： 10.15252/embj.201798654

Source DB:  PubMed          Journal:  EMBO J        ISSN： 0261-4189            Impact factor:   11.598


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  11 in total

Review 1.  Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis.

Authors:  K Nasmyth
Journal:  Annu Rev Genet       Date:  2001       Impact factor: 16.830

2.  Cohesin Loss Eliminates All Loop Domains.

Authors:  Suhas S P Rao; Su-Chen Huang; Brian Glenn St Hilaire; Jesse M Engreitz; Elizabeth M Perez; Kyong-Rim Kieffer-Kwon; Adrian L Sanborn; Sarah E Johnstone; Gavin D Bascom; Ivan D Bochkov; Xingfan Huang; Muhammad S Shamim; Jaeweon Shin; Douglass Turner; Ziyi Ye; Arina D Omer; James T Robinson; Tamar Schlick; Bradley E Bernstein; Rafael Casellas; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

3.  Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.

Authors:  Gordana Wutz; Csilla Várnai; Kota Nagasaka; David A Cisneros; Roman R Stocsits; Wen Tang; Stefan Schoenfelder; Gregor Jessberger; Matthias Muhar; M Julius Hossain; Nike Walther; Birgit Koch; Moritz Kueblbeck; Jan Ellenberg; Johannes Zuber; Peter Fraser; Jan-Michael Peters
Journal:  EMBO J       Date:  2017-12-07       Impact factor: 11.598

4.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

5.  Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.

Authors:  Adrian L Sanborn; Suhas S P Rao; Su-Chen Huang; Neva C Durand; Miriam H Huntley; Andrew I Jewett; Ivan D Bochkov; Dharmaraj Chinnappan; Ashok Cutkosky; Jian Li; Kristopher P Geeting; Andreas Gnirke; Alexandre Melnikov; Doug McKenna; Elena K Stamenova; Eric S Lander; Erez Lieberman Aiden
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-23       Impact factor: 11.205

6.  Formation of Chromosomal Domains by Loop Extrusion.

Authors:  Geoffrey Fudenberg; Maxim Imakaev; Carolyn Lu; Anton Goloborodko; Nezar Abdennur; Leonid A Mirny
Journal:  Cell Rep       Date:  2016-05-19       Impact factor: 9.423

7.  Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.

Authors:  Elphège P Nora; Anton Goloborodko; Anne-Laure Valton; Johan H Gibcus; Alec Uebersohn; Nezar Abdennur; Job Dekker; Leonid A Mirny; Benoit G Bruneau
Journal:  Cell       Date:  2017-05-18       Impact factor: 41.582

8.  Two independent modes of chromatin organization revealed by cohesin removal.

Authors:  Wibke Schwarzer; Nezar Abdennur; Anton Goloborodko; Aleksandra Pekowska; Geoffrey Fudenberg; Yann Loe-Mie; Nuno A Fonseca; Wolfgang Huber; Christian H Haering; Leonid Mirny; Francois Spitz
Journal:  Nature       Date:  2017-09-27       Impact factor: 49.962

9.  Biochemical reconstitution of topological DNA binding by the cohesin ring.

Authors:  Yasuto Murayama; Frank Uhlmann
Journal:  Nature       Date:  2013-12-01       Impact factor: 49.962

10.  A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.

Authors:  Johanna Gassler; Hugo B Brandão; Maxim Imakaev; Ilya M Flyamer; Sabrina Ladstätter; Wendy A Bickmore; Jan-Michael Peters; Leonid A Mirny; Kikuë Tachibana
Journal:  EMBO J       Date:  2017-12-07       Impact factor: 11.598
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  6 in total

Review 1.  Recent advances in the spatial organization of the mammalian genome.

Authors:  Yatendra Kumar; Dipta Sengupta; Wendya Bickmore
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

2.  Wapl releases Scc1-cohesin and regulates chromosome structure and segregation in mouse oocytes.

Authors:  Mariana C C Silva; Sean Powell; Sabrina Ladstätter; Johanna Gassler; Roman Stocsits; Antonio Tedeschi; Jan-Michael Peters; Kikuë Tachibana
Journal:  J Cell Biol       Date:  2020-04-06       Impact factor: 10.539

3.  Cohesin depleted cells rebuild functional nuclear compartments after endomitosis.

Authors:  Marion Cremer; Katharina Brandstetter; Andreas Maiser; Suhas S P Rao; Volker J Schmid; Miguel Guirao-Ortiz; Namita Mitra; Stefania Mamberti; Kyle N Klein; David M Gilbert; Heinrich Leonhardt; M Cristina Cardoso; Erez Lieberman Aiden; Hartmann Harz; Thomas Cremer
Journal:  Nat Commun       Date:  2020-12-01       Impact factor: 14.919

4.  Calcium signaling instructs NIPBL recruitment at active enhancers and promoters via distinct mechanisms to reconstruct genome compartmentalization.

Authors:  Yina Zhu; Matthew Denholtz; Hanbin Lu; Cornelis Murre
Journal:  Genes Dev       Date:  2020-12-17       Impact factor: 11.361

5.  Rearrangement of T Cell genome architecture regulates GVHD.

Authors:  Yaping Sun; Gabrielle A Dotson; Lindsey A Muir; Scott Ronquist; Katherine Oravecz-Wilson; Daniel Peltier; Keisuke Seike; Lu Li; Walter Meixner; Indika Rajapakse; Pavan Reddy
Journal:  iScience       Date:  2022-08-06

Review 6.  Anaphase Bridges: Not All Natural Fibers Are Healthy.

Authors:  Alice Finardi; Lucia F Massari; Rosella Visintin
Journal:  Genes (Basel)       Date:  2020-08-07       Impact factor: 4.096
  6 in total

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