Literature DB >> 29217584

Aging and neurodegeneration are associated with increased mutations in single human neurons.

Michael A Lodato1,2,3, Rachel E Rodin1,2,3,4, Craig L Bohrson5, Michael E Coulter1,2,3,4, Alison R Barton5, Minseok Kwon5, Maxwell A Sherman5, Carl M Vitzthum5, Lovelace J Luquette5, Chandri N Yandava6, Pengwei Yang6, Thomas W Chittenden6,7,8, Nicole E Hatem1,2,3, Steven C Ryu1,2,3, Mollie B Woodworth1,2,3, Peter J Park9,10, Christopher A Walsh11,2,3.   

Abstract

It has long been hypothesized that aging and neurodegeneration are associated with somatic mutation in neurons; however, methodological hurdles have prevented testing this hypothesis directly. We used single-cell whole-genome sequencing to perform genome-wide somatic single-nucleotide variant (sSNV) identification on DNA from 161 single neurons from the prefrontal cortex and hippocampus of 15 normal individuals (aged 4 months to 82 years), as well as 9 individuals affected by early-onset neurodegeneration due to genetic disorders of DNA repair (Cockayne syndrome and xeroderma pigmentosum). sSNVs increased approximately linearly with age in both areas (with a higher rate in hippocampus) and were more abundant in neurodegenerative disease. The accumulation of somatic mutations with age-which we term genosenium-shows age-related, region-related, and disease-related molecular signatures and may be important in other human age-associated conditions.
Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2017        PMID: 29217584      PMCID: PMC5831169          DOI: 10.1126/science.aao4426

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  47 in total

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Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

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  180 in total

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Journal:  Trends Genet       Date:  2018-05-03       Impact factor: 11.639

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Review 3.  Molecular Signatures of the Aging Brain: Finding the Links Between Genes and Phenotypes.

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5.  Neurons with Complex Karyotypes Are Rare in Aged Human Neocortex.

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6.  Linked-read analysis identifies mutations in single-cell DNA-sequencing data.

Authors:  Craig L Bohrson; Alison R Barton; Michael A Lodato; Rachel E Rodin; Lovelace J Luquette; Vinay V Viswanadham; Doga C Gulhan; Isidro Cortés-Ciriano; Maxwell A Sherman; Minseok Kwon; Michael E Coulter; Alon Galor; Christopher A Walsh; Peter J Park
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Review 8.  Brain cell somatic gene recombination and its phylogenetic foundations.

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Review 9.  Clonal expansion in non-cancer tissues.

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10.  Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR-Cas9 barcodes by scGESTALT.

Authors:  Bushra Raj; James A Gagnon; Alexander F Schier
Journal:  Nat Protoc       Date:  2018-11       Impact factor: 13.491

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