| Literature DB >> 29212272 |
Xiaoying Li1,2, XueLian Li1,2, Yangwu Ren1,2, Zhihua Yin1,2, Xiaowei Quan1,2, Xiaoxia Xue3, Baosen Zhou1,2.
Abstract
Lung cancer is one of the malignant tumors with the highest morbidity and mortality all over the world. Here we researched the association between two SNPs (rs1347093 in MIR217HG and rs1397529 in Gab1) and the risk of lung cancer in northeast Chinese population, including 825 cases and 766 controls. We carried out χ2 test, unconditional logistic regression analysis and crossover analysis to estimate the relationship between SNPs and lung cancer risk and the interaction between SNPs and smoking on susceptibility to lung cancer. The results indicated that rs1347093, rs1397529 polymorphisms were associated with lung cancer risk, especially with adenocarcinoma risk. Dominant genetic model of the rs1347093 was associated with reduced risk of lung cancer compared to CC genotype (AC+AA vs. CC: adjusted OR = 0.599, 95%CI = 0.418-0.858, P=0.005). For rs1347093, the similar result was found. Dominant genetic model of the rs1397529 was associated with reduced risk of lung cancer compared to AA genotype (AC+CC vs. AA: adjusted OR = 0.664, 95%CI = 0.491-0.897, P=0.008). There is no significant interaction between rs1347093, rs1397529 polymorphism and smoking on susceptibility to lung cancer. Our study might demonstrate that rs1347093 in MIR217HG and rs1397529 in Gab1 could be meaningful as the novel biomarker for lung cancer risk.Entities:
Keywords: Gab1; MIR217HG; lung cancer; single nucleotide polymorphisms; susceptibility
Year: 2017 PMID: 29212272 PMCID: PMC5706918 DOI: 10.18632/oncotarget.22030
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Demographics of the study subjects
| Characteristics | Cases n(%) | Controls n(%) | |
|---|---|---|---|
| Gender | <0.001 | ||
| Female | 619(75.0) | 658(85.9) | |
| Male | 206(25.0) | 108(14.1) | |
| Age (years) | 58.567±11.054 | 57.158±13.341 | 0.197 |
| Stage* | |||
| I | 52(7.8) | ||
| II | 132(19.9) | ||
| III | 331(49.9) | ||
| IV | 149(22.4) | ||
| Histological type | |||
| Adenocarcinoma | 483(58.5) | ||
| Squamous cell carcinoma | 207(25.1) | ||
| Small cell lung cancer | 95(11.5) | ||
| other | 40(4.9) | ||
| Family history of cancer* | 0.912 | ||
| yes | 68(12.6) | 82(12.8) | |
| no | 471(87.4) | 557(87.2) | |
| Smoking | <0.001 | ||
| yes | 183(22.2) | 54(7.0) | |
| no | 642(77.8) | 712(93.0) |
*There are missing values.
Distributions of rs1347093, rs1397529 genotypes and alleles among lung cancer cases and controls and their associations with the risk of lung cancer
| Genotype | Cases n(%) | Controls n(%) | OR [ | OR[95%CI] adj | ||
|---|---|---|---|---|---|---|
| rs1347093 | ||||||
| CC | 768(93.1) | 680(88.8) | 1.00(ref) | 1.00(ref) | ||
| AC | 56(6.8) | 85(11.1) | 0.003 | 0.583(0.410,0.830) | 0.005 | 0.594(0.413,0.853) |
| AA | 1(0.1) | 1(0.1) | 0.931 | 0.885(0.055,14.183) | 0.978 | 1.040(0.065,16.667) |
| AC/AA | 57(6.9) | 86(11.2) | 0.003 | 0.587(0.413,0.833) | 0.005 | 0.599(0.418,0.858) |
| C | 1592(96.5) | 1445(94.3) | 1.00(ref) | 1.00(ref) | ||
| A | 58(3.5) | 87(5.7) | 0.004 | 0.605(0.431,0.850) | 0.007 | 0.619(0.436,0.877) |
| rs1397529 | ||||||
| AA | 736(89.2) | 646(84.3) | 1.00(ref) | 1.00(ref) | ||
| AC | 83(10.1) | 114(14.9) | 0.004 | 0.639(0.473,0.864) | 0.006 | 0.649(0.476,0.884) |
| CC | 6(0.7) | 6(0.8) | 0.822 | 0.878(0.282,2.735) | 0.944 | 0.959(0.303,3.039) |
| AC/CC | 89(10.8) | 120(15.7) | 0.004 | 0.651(0.485,0.873) | 0.008 | 0.664(0.491,0.897) |
| A | 1555(94.2) | 1406(91.8) | 1.00(ref) | 1.00(ref) | ||
| C | 95(5.8) | 126(8.2) | 0.006 | 0.682(0.517,0.898) | 0.013 | 0.697(0.526,0.926) |
P adj and OR[95%CI] adj were adjusted for age, gender and smoking.
The effect of the SNPs rs1347093 and rs1397529 in the region on lung cancer risk in pathological subgroup
| Genotype | Cases n(%) | Controls n(%) | OR(95%CI) | OR(95%CI) adj | ||
|---|---|---|---|---|---|---|
| rs1347093 | ||||||
| Adenocarcinomas | ||||||
| CC | 450(93.2) | 680(88.8) | 1.00(ref) | 1.00(ref) | ||
| AA/AC | 33(6.8) | 86(11.2) | 0.011 | 0.580(0.382,0.881) | 0.017 | 0.598(0.393,0.912) |
| Squamous cell carcinoma | ||||||
| CC | 188(90.8) | 680(88.8) | 1.00(ref) | 1.00(ref) | ||
| AA/AC | 19(9.2) | 86(11.2) | 0.400 | 0.799(0.474,1.347) | 0.522 | 0.826(0.460,1.484) |
| Small cell lung cancer | ||||||
| CC | 91(95.8) | 680(88.8) | 1.00(ref) | 1.00(ref) | ||
| AA/AC | 4(4.2) | 86(11.2) | 0.015 | 0.280(0.101,0.778) | 0.020 | 0.296(0.106,0.826) |
| rs1397529 | ||||||
| Adenocarcinomas | ||||||
| AA | 429(88.8) | 646(84.3) | 1.00(ref) | 1.00(ref) | ||
| AC/CC | 54(11.2) | 120(15.7) | 0.026 | 0.678(0.481,0.955) | 0.035 | 0.689(0.488,0.974) |
| Squamous cell carcinoma | ||||||
| AA | 186(89.9) | 646(84.3) | 1.00(ref) | 1.00(ref) | ||
| AC/CC | 21(10.1) | 120(15.7) | 0.047 | 0.608(0.372,0.994) | 0.171 | 0.686(0.401,1.176) |
| Small cell lung cancer | ||||||
| AA | 87(91.6) | 646(84.3) | 1.00(ref) | 1.00(ref) | ||
| AC/CC | 8(8.4) | 120(15.7) | 0.066 | 0.495(0.234,1.048) | 0.084 | 0.515(0.242,1.093) |
P adj and OR[95%CI] adj were adjusted for age, gender and smoking.
Associations between rs134709, rs1397529 polymorphisms and lung cancer susceptibility, stratified by stages
| Genotype | Cases n(%) | Controls n(%) | OR(95%CI) | OR(95%CI) adj | ||
|---|---|---|---|---|---|---|
| rs1347093 | ||||||
| stage I+II | ||||||
| CC | 169(91.8) | 680(88.8) | 1(ref) | 1(ref) | ||
| AA/AC | 15(8.2) | 86(11.2) | 0.226 | 0.702(0.395,1.246) | 0.232 | 0.700(0.390,1.256) |
| stage III+ IV | ||||||
| CC | 449(93.5) | 680(88.8) | 1(ref) | 1(ref) | ||
| AA/AC | 31(6.5) | 86(11.2) | 0.006 | 0.546(0.356,0.837) | 0.011 | 0.568(0.368,0.876) |
| rs1397529 | ||||||
| stage I+II | ||||||
| AA | 165(89.7) | 646(84.3) | 1(ref) | 1(ref) | ||
| AC/CC | 19(10.3) | 120(15.7) | 0.068 | 0.620(0.371,1.036) | 0.111 | 0.655(0.390,1.102) |
| stage III+ IV | ||||||
| AA | 431(89.8) | 646(84.3) | 1(ref) | 1(ref) | ||
| AC/CC | 49(10.2) | 120(15.7) | 0.007 | 0.612(0.430,0.872) | 0.017 | 0.647(0.452,0.925) |
P adj and OR[95%CI] adj were adjusted for age, gender and smoking.
Associations between rs1347093, rs1397529 polymorphisms and lung cancer susceptibility, stratified by smoking status
| Genotypes | Cases n(%) | Controls n(%) | OR[95%CI] | OR[95%CI] adj | ||
|---|---|---|---|---|---|---|
| rs1347093 | ||||||
| Non-exposed | ||||||
| CC | 599(93.3) | 630(88.5) | 1(ref) | 1(ref) | ||
| AC/AA | 43(6.7) | 82(11.5) | 0.002 | 0.552(0.375,0.811) | 0.003 | 0.559(0.380,0.823) |
| Exposed | ||||||
| CC | 169(92.3) | 50(92.6) | 1(ref) | 1(ref) | ||
| AC/AA | 14(7.7) | 4(7.4) | 0.004 | 0.651(0.485,0.873) | 0.008 | 0.664(0.491,0.897) |
| rs1397529 | ||||||
| Non-exposed | ||||||
| AA | 576(89.7) | 596(83.7) | 1(ref) | 1(ref) | ||
| AC/CC | 66(10.3) | 116(16.3) | 0.001 | 0.589(0.426,0.813) | 0.002 | 0.595(0.430,0.822) |
| Exposed | ||||||
| AA | 160(87.4) | 50(92.6) | 1(ref) | 1(ref) | ||
| AC/CC | 23(12.6) | 4(7.4) | 0.300 | 1.797(0.593,5.443) | 0.301 | 1.800(0.591,5.478) |
P adj and OR[95%CI] adj were adjusted for age and gender.
Associations between rs1347093, rs1397529 polymorphisms and lung cancer susceptibility, stratified by gender
| Genotypes | Cases n(%) | Controls n(%) | OR[95%CI] | OR[95%CI] adj | ||
|---|---|---|---|---|---|---|
| rs1347093 | ||||||
| Female | ||||||
| CC | 576(93.1) | 584(88.8) | 1(ref) | 1(ref) | ||
| AC/AA | 43(6.9) | 74(11.2) | 0.008 | 0.589(0.398,0.873) | 0.008 | 0.582(0.391,0.866) |
| Male | ||||||
| CC | 192(93.2) | 96(88.9) | 1(ref) | 1(ref) | ||
| AC/AA | 14(6.8) | 12(11.1) | 0.192 | 0.583(0.260,1.310) | 0.360 | 0.665(0.278,1.592) |
| rs1397529 | ||||||
| Female | ||||||
| AA | 556(89.8) | 555(84.3) | 1(ref) | 1(ref) | ||
| AC/CC | 63(10.2) | 103(15.7) | 0.004 | 0.611(0.437,0.853) | 0.003 | 0.605(0.432,0.847) |
| Male | ||||||
| AA | 180(87.4) | 91(84.3) | 1(ref) | 1(ref) | ||
| AC/CC | 26(12.6) | 17(15.7) | 0.446 | 0.773(0.399,1.498) | 0.993 | 0.997(0.486,2.045) |
P adj and OR[95%CI] adj were adjusted for age and smoking.
Interaction between rs1347093, rs1397529 polymorphisms and smoking on lung cancer susceptibility
| SNP | Smoking | Cases | Controls | OR(95%CI) | OR(95%CI) adj | ||
|---|---|---|---|---|---|---|---|
| rs1347093 | |||||||
| AA/AC | Non-exposure | 43 | 82 | 1(ref) | 1(ref) | ||
| CC | Non-exposure | 599 | 630 | 0.002 | 1.813(1.233,2.666) | 0.003 | 1.785(1.212,2.628) |
| AA/AC | Exposure | 14 | 4 | 0.001 | 6.674(2.070,21.524) | <0.001 | 9.202(2.704,31.318) |
| CC | Exposure | 169 | 50 | <0.001 | 6.446(3.966,10.474) | <0.001 | 9.007(4.877,16.637) |
| rs1397529 | |||||||
| CC/AC | Non-exposure | 66 | 116 | 1(ref) | 1(ref) | ||
| AA | Non-exposure | 576 | 596 | 0.001 | 1.699(1.230,2.347) | 0.002 | 1.679(1.215,2.322) |
| CC/AC | Exposure | 23 | 4 | <0.001 | 10.106(3.351,30.480) | <0.001 | 13.885(4.344,44.385) |
| AA | Exposure | 160 | 50 | <0.001 | 5.624(3.628,8.718) | <0.001 | 7.723(4.364,13.668) |
P adj and OR[95%CI] adj were adjusted for age and gender.
Crossover analysis of interaction between rs1347093, rs1397529 polymorphisms and smoking on lung cancer susceptibility
| Measure | Estimate | Lower | Upper |
|---|---|---|---|
| rs1347093 | |||
| RERI | -0.975 | -11.307 | 9.356 |
| AP | -0.108 | -1.255 | 1.038 |
| S | 0.891 | 0.282 | 2.814 |
| rs1397529 | |||
| RERI | -6.845 | -15.522 | 1.832 |
| AP | -0.886 | -2.899 | 1.126 |
| S | 0.495 | 0.146 | 1.686 |
Logistic model of interaction between rs1347093, rs1397529 polymorphisms and smoking on lung cancer susceptibility
| Variables | Cases | Controls | OR(95%CI) adj | |
|---|---|---|---|---|
| rs1347093 | ||||
| SNP | ||||
| AC/AA | 57 | 86 | 1(ref) | |
| CC | 768 | 680 | 0.003 | 1.785(1.212,2.628) |
| smoking | ||||
| no | 471 | 557 | 1(ref) | |
| yes | 68 | 82 | <0.001 | 9.202(2.704,31.318) |
| interaction | 0.334 | 0.548(0.162,1.857) | ||
| rs1397529 | ||||
| SNP | ||||
| AC/CC | 89 | 120 | 1(ref) | |
| AA | 736 | 646 | 0.002 | 1.679(1.215,2.322) |
| smoking | ||||
| no | 471 | 557 | 1(ref) | |
| yes | 68 | 82 | <0.001 | 13.885(4.344,44.385) |
| interaction | 0.061 | 0.331(0.104,1.052) |
P adj and OR[95%CI] adj were adjusted for age and gender.