Literature DB >> 29200477

Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.

S Dura-Bernal, S A Neymotin, C C Kerr, S Sivagnanam, A Majumdar, J T Francis, W W Lytton.   

Abstract

Biomimetic simulation permits neuroscientists to better understand the complex neuronal dynamics of the brain. Embedding a biomimetic simulation in a closed-loop neuroprosthesis, which can read and write signals from the brain, will permit applications for amelioration of motor, psychiatric, and memory-related brain disorders. Biomimetic neuroprostheses require real-time adaptation to changes in the external environment, thus constituting an example of a dynamic data-driven application system. As model fidelity increases, so does the number of parameters and the complexity of finding appropriate parameter configurations. Instead of adapting synaptic weights via machine learning, we employed major biological learning methods: spike-timing dependent plasticity and reinforcement learning. We optimized the learning metaparameters using evolutionary algorithms, which were implemented in parallel and which used an island model approach to obtain sufficient speed. We employed these methods to train a cortical spiking model to utilize macaque brain activity, indicating a selected target, to drive a virtual musculoskeletal arm with realistic anatomical and biomechanical properties to reach to that target. The optimized system was able to reproduce macaque data from a comparable experimental motor task. These techniques can be used to efficiently tune the parameters of multiscale systems, linking realistic neuronal dynamics to behavior, and thus providing a useful tool for neuroscience and neuroprosthetics.

Entities:  

Year:  2017        PMID: 29200477      PMCID: PMC5708558          DOI: 10.1147/JRD.2017.2656758

Source DB:  PubMed          Journal:  IBM J Res Dev        ISSN: 0018-8646            Impact factor:   1.889


  46 in total

Review 1.  Automated neuron model optimization techniques: a review.

Authors:  W Van Geit; E De Schutter; P Achard
Journal:  Biol Cybern       Date:  2008-11-15       Impact factor: 2.086

2.  Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON.

Authors:  William W Lytton; Alexandra H Seidenstein; Salvador Dura-Bernal; Robert A McDougal; Felix Schürmann; Michael L Hines
Journal:  Neural Comput       Date:  2016-08-24       Impact factor: 2.026

Review 3.  Dopaminergic system in birdsong learning and maintenance.

Authors:  Lubica Kubikova; Lubor Kostál
Journal:  J Chem Neuroanat       Date:  2009-11-10       Impact factor: 3.052

4.  Dopamine in motor cortex is necessary for skill learning and synaptic plasticity.

Authors:  Katiuska Molina-Luna; Ana Pekanovic; Sebastian Röhrich; Benjamin Hertler; Maximilian Schubring-Giese; Mengia-Seraina Rioult-Pedotti; Andreas R Luft
Journal:  PLoS One       Date:  2009-09-17       Impact factor: 3.240

5.  Restoring Behavior via Inverse Neurocontroller in a Lesioned Cortical Spiking Model Driving a Virtual Arm.

Authors:  Salvador Dura-Bernal; Kan Li; Samuel A Neymotin; Joseph T Francis; Jose C Principe; William W Lytton
Journal:  Front Neurosci       Date:  2016-02-09       Impact factor: 4.677

6.  Cortical plasticity induced by spike-triggered microstimulation in primate somatosensory cortex.

Authors:  Weiguo Song; Cliff C Kerr; William W Lytton; Joseph T Francis
Journal:  PLoS One       Date:  2013-03-05       Impact factor: 3.240

7.  Modular neuronal assemblies embodied in a closed-loop environment: toward future integration of brains and machines.

Authors:  Jacopo Tessadori; Marta Bisio; Sergio Martinoia; Michela Chiappalone
Journal:  Front Neural Circuits       Date:  2012-12-12       Impact factor: 3.492

8.  Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models.

Authors:  Giljae Lee; Andréa Matsunaga; Salvador Dura-Bernal; Wenjie Zhang; William W Lytton; Joseph T Francis; José Ab Fortes
Journal:  J Comput Surg       Date:  2014-11

9.  Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm.

Authors:  Salvador Dura-Bernal; Xianlian Zhou; Samuel A Neymotin; Andrzej Przekwas; Joseph T Francis; William W Lytton
Journal:  Front Neurorobot       Date:  2015-11-25       Impact factor: 2.650

Review 10.  Restoring sensorimotor function through intracortical interfaces: progress and looming challenges.

Authors:  Sliman J Bensmaia; Lee E Miller
Journal:  Nat Rev Neurosci       Date:  2014-05       Impact factor: 34.870

View more
  9 in total

1.  Brian 2, an intuitive and efficient neural simulator.

Authors:  Romain Brette; Dan Fm Goodman; Marcel Stimberg
Journal:  Elife       Date:  2019-08-20       Impact factor: 8.140

2.  Simulating Large-scale Models of Brain Neuronal Circuits using Google Cloud Platform.

Authors:  Subhashini Sivagnanam; Wyatt Gorman; Donald Doherty; Samuel A Neymotin; Stephan Fang; Hermine Hovhannisyan; William W Lytton; Salvador Dura-Bernal
Journal:  PEARC20 (2020)       Date:  2020-07

3.  EDEN: A High-Performance, General-Purpose, NeuroML-Based Neural Simulator.

Authors:  Sotirios Panagiotou; Harry Sidiropoulos; Dimitrios Soudris; Mario Negrello; Christos Strydis
Journal:  Front Neuroinform       Date:  2022-05-20       Impact factor: 3.739

4.  Multiscale modeling meets machine learning: What can we learn?

Authors:  Grace C Y Peng; Mark Alber; Adrian Buganza Tepole; William R Cannon; Suvranu De; Salvador Dura-Bernal; Krishna Garikipati; George Karniadakis; William W Lytton; Paris Perdikaris; Linda Petzold; Ellen Kuhl
Journal:  Arch Comput Methods Eng       Date:  2020-02-17       Impact factor: 7.302

5.  NetPyNE, a tool for data-driven multiscale modeling of brain circuits.

Authors:  Salvador Dura-Bernal; Benjamin A Suter; Padraig Gleeson; Matteo Cantarelli; Adrian Quintana; Facundo Rodriguez; David J Kedziora; George L Chadderdon; Cliff C Kerr; Samuel A Neymotin; Robert A McDougal; Michael Hines; Gordon Mg Shepherd; William W Lytton
Journal:  Elife       Date:  2019-04-26       Impact factor: 8.140

6.  Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits.

Authors:  Padraig Gleeson; Matteo Cantarelli; Boris Marin; Adrian Quintana; Matt Earnshaw; Sadra Sadeh; Eugenio Piasini; Justas Birgiolas; Robert C Cannon; N Alex Cayco-Gajic; Sharon Crook; Andrew P Davison; Salvador Dura-Bernal; András Ecker; Michael L Hines; Giovanni Idili; Frederic Lanore; Stephen D Larson; William W Lytton; Amitava Majumdar; Robert A McDougal; Subhashini Sivagnanam; Sergio Solinas; Rokas Stanislovas; Sacha J van Albada; Werner van Geit; R Angus Silver
Journal:  Neuron       Date:  2019-06-11       Impact factor: 17.173

7.  Training spiking neuronal networks to perform motor control using reinforcement and evolutionary learning.

Authors:  Daniel Haşegan; Matt Deible; Christopher Earl; David D'Onofrio; Hananel Hazan; Haroon Anwar; Samuel A Neymotin
Journal:  Front Comput Neurosci       Date:  2022-09-30       Impact factor: 3.387

8.  Optimization by Adaptive Stochastic Descent.

Authors:  Cliff C Kerr; Salvador Dura-Bernal; Tomasz G Smolinski; George L Chadderdon; David P Wilson
Journal:  PLoS One       Date:  2018-03-16       Impact factor: 3.240

Review 9.  Integrating machine learning and multiscale modeling-perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences.

Authors:  Mark Alber; Adrian Buganza Tepole; William R Cannon; Suvranu De; Salvador Dura-Bernal; Krishna Garikipati; George Karniadakis; William W Lytton; Paris Perdikaris; Linda Petzold; Ellen Kuhl
Journal:  NPJ Digit Med       Date:  2019-11-25
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.