| Literature DB >> 29198204 |
Joanna Martin1,2, Mark J Taylor1, Paul Lichtenstein1.
Abstract
Genetic influences play a significant role in risk for psychiatric disorders, prompting numerous endeavors to further understand their underlying genetic architecture. In this paper, we summarize and review evidence from traditional twin studies and more recent genome-wide molecular genetic analyses regarding two important issues that have proven particularly informative for psychiatric genetic research. First, emerging results are beginning to suggest that genetic risk factors for some (but not all) clinically diagnosed psychiatric disorders or extreme manifestations of psychiatric traits in the population share genetic risks with quantitative variation in milder traits of the same disorder throughout the general population. Second, there is now evidence for substantial sharing of genetic risks across different psychiatric disorders. This extends to the level of characteristic traits throughout the population, with which some clinical disorders also share genetic risks. In this review, we summarize and evaluate the evidence for these two issues, for a range of psychiatric disorders. We then critically appraise putative interpretations regarding the potential meaning of genetic correlation across psychiatric phenotypes. We highlight several new methods and studies which are already using these insights into the genetic architecture of psychiatric disorders to gain additional understanding regarding the underlying biology of these disorders. We conclude by outlining opportunities for future research in this area.Entities:
Keywords: GWAS; genetic correlation; genetics; pleiotropy; twin studies
Mesh:
Year: 2017 PMID: 29198204 PMCID: PMC6088770 DOI: 10.1017/S0033291717003440
Source DB: PubMed Journal: Psychol Med ISSN: 0033-2917 Impact factor: 7.723
Fig. 1.Hypothesized models of: (a) shared genetic risks across disorder and population trait variation, where the extreme end of a continuous distribution of a trait is associated with a continuous underlying genetic liability, and (b) shared genetic risks across different disorders, where squares labeled ‘P’ represent phenotypes, and squares labeled ‘G’ and ‘E’, represent genetic or environmental contributions, respectively, that can be shared or unique (indicated by the number of arrows pointing to phenotypes). All G factors are uncorrelated with one another and thus the entire genetic contribution to a phenotype can be modelled as the sum of the genetic factors contributing to it (e.g. for P1 this would be G1 + G2 + G3 + G5). The same is true for environmental factors (i.e. environmental contribution to P1 is E1 + E2 + E3 + E5). As an illustrative example, if P1 were ADHD, P2 were ASD, and P3 were MDD, then G1 represents any genetic variants that are shared between ADHD, ASD, and MDD; G2–G4 represents genetic variants shared between only two of these disorders (e.g. G2 would be genetic risk for ADHD and ASD but not MDD); and G5–G7 represent unique genetic risks (e.g. G5 is genetic risk that is unique to ADHD and not shared with either ASD or MDD). N.B. The shapes are not indicative of whether a variable is latent or measured.
Summary of studies investigating shared genetic risks across disorders and trait variation
| Disorder | Evidence from studies |
|---|---|
| ASD | |
| ADHD | |
| ID | |
| Anxiety disorders | |
| OCD | |
| MDD | |
| SCZ & psychosis |
ASD, autism spectrum disorder; ADHD, attention-deficit hyperactivity disorder; ID, intellectual disability; OCD, obsessive-compulsive disorder; MDD, major depressive disorder; SCZ, schizophrenia
Group heritability (implemented in DeFries-Fulker analysis) (DeFries & Fulker, 1985) refers to the degree to which genetic factors influence the mean difference between extreme groups and the rest of a sample; significant group heritability implies a genetic link between milder and more severe manifestations of a trait
Linkage disequilibrium score correlation (LDSC) (Bulik-Sullivan et al. 2015, ) estimates the contribution of all SNPs from genome-wide data and indexes this as an estimate of SNP-heritability; which is different to twin heritability (Wray et al. 2014). This method can be applied to examine shared genetic risks between disorders and population traits to give an estimate of genetic correlation. Genome-wide association studies (GWAS) directly assess the independent association of many millions of common genetic variants (single nucleotide polymorphisms; SNPs) with a phenotype. Polygenic risk score (PRS) analysis, uses a GWAS ‘discovery’ sample to calculate genetic risk scores for individuals in an independent ‘target’ sample with genetic data; scores are derived by calculating the number of risk alleles weighted by the discovery effect size for each SNP and then summing these values for the set of SNPs, for each target individual (The International Schizophrenia Consortium, 2009). Regression analyses are used to test whether PRS for the discovery phenotype (e.g. clinical disorder) are associated with phenotypes of interest in the independent target sample (e.g. symptom variation in the population)
Summary of studies investigating shared genetic risks across disorders
| Disorder | ASD | ADHD | ID | SCZ | BD | MDD | AXD | AN&ED | OCD |
|---|---|---|---|---|---|---|---|---|---|
| ADHD | |||||||||
| ID | |||||||||
| SCZ | |||||||||
| BD | |||||||||
| MDD | |||||||||
| AXD | |||||||||
| AN&ED | |||||||||
| OCD | |||||||||
| TS |
ADHD, attention-deficit hyperactivity disorder; AN&ED, anorexia nervosa and other eating disorders; ASD, autism spectrum disorder; AXD, anxiety disorders; BD, bipolar disorder; ID, intellectual disability; MDD, major depressive disorder; OCD, obsessive-compulsive disorder; SCZ, schizophrenia; TS, Tourette's syndrome and other tic disorders; SNP, single nucleotide polymorphism; CNV, copy number variant; PRS, polygenic risk score analysis; ns, non-significant estimates based on published studies.
Twin rg is the correlation between the additive genetic variance components from twin studies. Note that the ‘twin rg’ in Lichtenstein et al. (2009) & Song et al. (2015) are estimated from family studies but with a similar approach as in twin studies. SNP rg: is the estimated genetic correlation from genome-wide association studies using LDSC (linkage disequilibrium score correlation) or GCTA (genome-wide complex trait analysis). Only results estimated to be nominally significantly different from zero (p < 0.05) are presented. For a more detailed explanation of the methods, please refer to the caption of Table 1. The GREML-GCTA method (genetic relatedness estimation through maximum likelihood using the GCTA software) (Yang et al. 2011; Lee et al. 2012) is conceptually similar to LDSC; it is used to estimate the contribution of all SNPs from genome-wide data (SNP-heritability) and can be applied to examine shared genetic risks between disorders and population traits to give an estimate of genetic correlation.
Fig. 2.Potential interpretations of genetic correlation across phenotypes: (a) true biological pleiotropy, where the same genetic risk variant is causally associated with two phenotypes; (b) unmeasured phenotype, where a third phenotype is on the causal pathway between genetic risk and the outcome phenotypes of interest; (c) correlated genetic risk, where different genetic risk variants that are highly correlated are causally associated with each phenotype; (d) mediation, where a genetic risk variant only acts on one of the phenotypes, which in turn influences a second phenotype; (e) Nosological issues, which blur the distinction between phenotypes, for example comorbidity, ascertainment bias, heterogeneity or diagnostic misclassification; (f) assortative mating, where individuals with the two phenotypes of interest are more likely to mate than expected at random, thereby leading to clustering of genetic risk for both phenotypes in the offspring. N.B. The shapes are not indicative of whether a variable is latent or measured.