Literature DB >> 29194919

A novel Chromatiales bacterium is a potential sulfide oxidizer in multiple orders of marine sponges.

Adi Lavy1,2, Ray Keren1,3, Ke Yu3, Brian C Thomas2, Lisa Alvarez-Cohen3, Jillian F Banfield2, Micha Ilan1.   

Abstract

Sponges are benthic filter feeders that play pivotal roles in coupling benthic-pelagic processes in the oceans that involve transformation of dissolved and particulate organic carbon and nitrogen into biomass. While the contribution of sponge holobionts to the nitrogen cycle has been recognized in past years, their importance in the sulfur cycle, both oceanic and physiological, has only recently gained attention. Sponges in general, and Theonella swinhoei in particular, harbour a multitude of associated microorganisms that could affect sulfur cycling within the holobiont. We reconstructed the genome of a Chromatiales (class Gammaproteobacteria) bacterium from a metagenomic sequence dataset of a T. swinhoei-associated microbial community. This relatively abundant bacterium has the metabolic capability to oxidize sulfide yet displays reduced metabolic potential suggestive of its lifestyle as an obligatory symbiont. This bacterium was detected in multiple sponge orders, according to similarities in key genes such as 16S rRNA and polyketide synthase genes. Due to its sulfide oxidation metabolism and occurrence in many members of the Porifera phylum, we suggest naming the newly described taxon Candidatus Porisulfidus.
© 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 29194919      PMCID: PMC5812793          DOI: 10.1111/1462-2920.14013

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  74 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Two classes of metabolites from Theonella swinhoei are localized in distinct populations of bacterial symbionts.

Authors:  C A Bewley; N D Holland; D J Faulkner
Journal:  Experientia       Date:  1996-07-15

3.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

4.  Calyculin biogenesis from a pyrophosphate protoxin produced by a sponge symbiont.

Authors:  Toshiyuki Wakimoto; Yoko Egami; Yu Nakashima; Yukihiko Wakimoto; Takahiro Mori; Takayoshi Awakawa; Takuya Ito; Hiromichi Kenmoku; Yoshinori Asakawa; Jörn Piel; Ikuro Abe
Journal:  Nat Chem Biol       Date:  2014-06-29       Impact factor: 15.040

5.  Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations.

Authors:  Alexander J Probst; Cindy J Castelle; Andrea Singh; Christopher T Brown; Karthik Anantharaman; Itai Sharon; Laura A Hug; David Burstein; Joanne B Emerson; Brian C Thomas; Jillian F Banfield
Journal:  Environ Microbiol       Date:  2016-07-07       Impact factor: 5.491

6.  HMMER web server: 2015 update.

Authors:  Robert D Finn; Jody Clements; William Arndt; Benjamin L Miller; Travis J Wheeler; Fabian Schreiber; Alex Bateman; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2015-05-05       Impact factor: 16.971

Review 7.  The Sponge Hologenome.

Authors:  Nicole S Webster; Torsten Thomas
Journal:  mBio       Date:  2016-04-21       Impact factor: 7.867

8.  Sponge-associated bacteria mineralize arsenic and barium on intracellular vesicles.

Authors:  Ray Keren; Boaz Mayzel; Adi Lavy; Iryna Polishchuk; Davide Levy; Sirine C Fakra; Boaz Pokroy; Micha Ilan
Journal:  Nat Commun       Date:  2017-02-24       Impact factor: 14.919

9.  Genome Reduction and Microbe-Host Interactions Drive Adaptation of a Sulfur-Oxidizing Bacterium Associated with a Cold Seep Sponge.

Authors:  Ren-Mao Tian; Weipeng Zhang; Lin Cai; Yue-Him Wong; Wei Ding; Pei-Yuan Qian
Journal:  mSystems       Date:  2017-03-21       Impact factor: 6.496

10.  Phylogenetically and spatially close marine sponges harbour divergent bacterial communities.

Authors:  Cristiane C P Hardoim; Ana I S Esteves; Francisco R Pires; Jorge M S Gonçalves; Cymon J Cox; Joana R Xavier; Rodrigo Costa
Journal:  PLoS One       Date:  2012-12-27       Impact factor: 3.240

View more
  3 in total

1.  Cultivation of Sponge-Associated Bacteria from Agelas sventres and Xestospongia muta Collected from Different Depths.

Authors:  Anak Agung Gede Indraningrat; Sebastian Micheller; Mandy Runderkamp; Ina Sauerland; Leontine E Becking; Hauke Smidt; Detmer Sipkema
Journal:  Mar Drugs       Date:  2019-10-11       Impact factor: 5.118

2.  Subcellular view of host-microbiome nutrient exchange in sponges: insights into the ecological success of an early metazoan-microbe symbiosis.

Authors:  Meggie Hudspith; Laura Rix; Michelle Achlatis; Jeremy Bougoure; Paul Guagliardo; Peta L Clode; Nicole S Webster; Gerard Muyzer; Mathieu Pernice; Jasper M de Goeij
Journal:  Microbiome       Date:  2021-02-14       Impact factor: 14.650

3.  Phylogeny resolved, metabolism revealed: functional radiation within a widespread and divergent clade of sponge symbionts.

Authors:  Jessica A Taylor; Giorgia Palladino; Bernd Wemheuer; Georg Steinert; Detmer Sipkema; Timothy J Williams; Torsten Thomas
Journal:  ISME J       Date:  2020-10-03       Impact factor: 10.302

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.