Literature DB >> 29182337

pH-Driven Reversible Self-Assembly of Micron-Scale DNA Scaffolds.

Leopold N Green, Alessia Amodio1, Hari K K Subramanian, Francesco Ricci1, Elisa Franco.   

Abstract

Inspired by cytoskeletal scaffolds that sense and respond dynamically to environmental changes and chemical inputs with a unique capacity for reconfiguration, we propose a strategy that allows the dynamic and reversible control of the growth and breakage of micron-scale synthetic DNA structures upon pH changes. We do so by rationally designing a pH-responsive system composed of synthetic DNA strands that act as pH sensors, regulators, and structural elements. Sensor strands can dynamically respond to pH changes and route regulatory strands to direct the self-assembly of structural elements into tubular structures. This example represents the first demonstration of the reversible assembly and disassembly of micron-scale DNA scaffolds using an external chemical input other than DNA. The capacity to reversibly modulate nanostructure size may promote the development of smart devices for catalysis or drug-delivery applications.

Entities:  

Keywords:  DNA nanotechnology; active scaffolds; dynamic self-assembly; nucleic acids; pH

Mesh:

Substances:

Year:  2017        PMID: 29182337     DOI: 10.1021/acs.nanolett.7b02787

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  15 in total

1.  Choice of fluorophore affects dynamic DNA nanostructures.

Authors:  Kevin Jahnke; Helmut Grubmüller; Maxim Igaev; Kerstin Göpfrich
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

Review 2.  Dissipative DNA nanotechnology.

Authors:  Erica Del Grosso; Elisa Franco; Leonard J Prins; Francesco Ricci
Journal:  Nat Chem       Date:  2022-06-06       Impact factor: 24.274

3.  Engineering a responsive DNA triple helix into an octahedral DNA nanostructure for a reversible opening/closing switching mechanism: a computational and experimental integrated study.

Authors:  Alessio Ottaviani; Federico Iacovelli; Andrea Idili; Mattia Falconi; Francesco Ricci; Alessandro Desideri
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

4.  Switchable supracolloidal 3D DNA origami nanotubes mediated through fuel/antifuel reactions.

Authors:  Saskia Groeer; Andreas Walther
Journal:  Nanoscale       Date:  2020-08-20       Impact factor: 7.790

Review 5.  The Growing Development of DNA Nanostructures for Potential Healthcare-Related Applications.

Authors:  Divita Mathur; Igor L Medintz
Journal:  Adv Healthc Mater       Date:  2019-03-07       Impact factor: 11.092

6.  Interlocked DNA Nanojoints for Reversible Thermal Sensing.

Authors:  Yinzhou Ma; Mathias Centola; Daniel Keppner; Michael Famulok
Journal:  Angew Chem Int Ed Engl       Date:  2020-07-01       Impact factor: 15.336

7.  Dynamic self-assembly of compartmentalized DNA nanotubes.

Authors:  Siddharth Agarwal; Melissa A Klocke; Passa E Pungchai; Elisa Franco
Journal:  Nat Commun       Date:  2021-06-11       Impact factor: 14.919

8.  Proton gradients from light-harvesting E. coli control DNA assemblies for synthetic cells.

Authors:  Kevin Jahnke; Noah Ritzmann; Julius Fichtler; Anna Nitschke; Yannik Dreher; Tobias Abele; Götz Hofhaus; Ilia Platzman; Rasmus R Schröder; Daniel J Müller; Joachim P Spatz; Kerstin Göpfrich
Journal:  Nat Commun       Date:  2021-06-25       Impact factor: 14.919

9.  T7 RNA polymerase non-specifically transcribes and induces disassembly of DNA nanostructures.

Authors:  Samuel W Schaffter; Leopold N Green; Joanna Schneider; Hari K K Subramanian; Rebecca Schulman; Elisa Franco
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

Review 10.  DNA Assembly-Based Stimuli-Responsive Systems.

Authors:  Shasha Lu; Jianlei Shen; Chunhai Fan; Qian Li; Xiurong Yang
Journal:  Adv Sci (Weinh)       Date:  2021-05-14       Impact factor: 16.806

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