Literature DB >> 29178440

Invisible detergents for structure determination of membrane proteins by small-angle neutron scattering.

Søren Roi Midtgaard1, Tamim A Darwish2, Martin Cramer Pedersen1,3, Pie Huda1, Andreas Haahr Larsen1, Grethe Vestergaard Jensen1, Søren Andreas Røssell Kynde1, Nicholas Skar-Gislinge1, Agnieszka Janina Zygadlo Nielsen4, Claus Olesen5, Mickael Blaise6,7, Jerzy Józef Dorosz8, Thor Seneca Thorsen8, Raminta Venskutonytė8, Christian Krintel8, Jesper V Møller5,9, Henrich Frielinghaus10, Elliot Paul Gilbert11, Anne Martel12, Jette Sandholm Kastrup8, Poul Erik Jensen4, Poul Nissen9,13, Lise Arleth1.   

Abstract

A novel and generally applicable method for determining structures of membrane proteins in solution via small-angle neutron scattering (SANS) is presented. Common detergents for solubilizing membrane proteins were synthesized in isotope-substituted versions for utilizing the intrinsic neutron scattering length difference between hydrogen and deuterium. Individual hydrogen/deuterium levels of the detergent head and tail groups were achieved such that the formed micelles became effectively invisible in heavy water (D2 O) when investigated by neutrons. This way, only the signal from the membrane protein remained in the SANS data. We demonstrate that the method is not only generally applicable on five very different membrane proteins but also reveals subtle structural details about the sarco/endoplasmatic reticulum Ca2+ ATPase (SERCA). In all, the synthesis of isotope-substituted detergents makes solution structure determination of membrane proteins by SANS and subsequent data analysis available to nonspecialists.
© 2017 Federation of European Biochemical Societies.

Entities:  

Keywords:  SANS; Small-angle neutron scattering; contrast matching; deuteration; membrane proteins

Mesh:

Substances:

Year:  2017        PMID: 29178440     DOI: 10.1111/febs.14345

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  14 in total

1.  Examining Membrane Proteins by Neutron Scattering.

Authors:  Christine Ebel; Cécile Breyton; Anne Martel
Journal:  Methods Mol Biol       Date:  2020

2.  Preparation of a Deuterated Membrane Protein for Small-Angle Neutron Scattering.

Authors:  Yuqi Wu; Kevin L Weiss; Raquel L Lieberman
Journal:  Methods Mol Biol       Date:  2021

3.  Contrast-Matching Detergent in Small-Angle Neutron Scattering Experiments for Membrane Protein Structural Analysis and Ab Initio Modeling.

Authors:  Ryan C Oliver; Swe-Htet Naing; Kevin L Weiss; Sai Venkatesh Pingali; Raquel L Lieberman; Volker S Urban
Journal:  J Vis Exp       Date:  2018-10-21       Impact factor: 1.355

4.  Human Dystrophin Structural Changes upon Binding to Anionic Membrane Lipids.

Authors:  Raphael Dos Santos Morais; Olivier Delalande; Javier Pérez; Dominique Mias-Lucquin; Mélanie Lagarrigue; Anne Martel; Anne-Elisabeth Molza; Angélique Chéron; Céline Raguénès-Nicol; Thomas Chenuel; Arnaud Bondon; Marie-Sousai Appavou; Elisabeth Le Rumeur; Sophie Combet; Jean-François Hubert
Journal:  Biophys J       Date:  2018-08-17       Impact factor: 4.033

5.  Size-exclusion chromatography small-angle X-ray scattering of water soluble proteins on a laboratory instrument.

Authors:  Saskia Bucciarelli; Søren Roi Midtgaard; Martin Nors Pedersen; Søren Skou; Lise Arleth; Bente Vestergaard
Journal:  J Appl Crystallogr       Date:  2018-11-09       Impact factor: 3.304

6.  Membrane Protein Structures in Lipid Bilayers; Small-Angle Neutron Scattering With Contrast-Matched Bicontinuous Cubic Phases.

Authors:  Charlotte E Conn; Liliana de Campo; Andrew E Whitten; Christopher J Garvey; Anwen M Krause-Heuer; Leonie van 't Hag
Journal:  Front Chem       Date:  2021-02-09       Impact factor: 5.221

7.  Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.

Authors:  Andreas Haahr Larsen; Yong Wang; Sandro Bottaro; Sergei Grudinin; Lise Arleth; Kresten Lindorff-Larsen
Journal:  PLoS Comput Biol       Date:  2020-04-27       Impact factor: 4.475

8.  Small-angle neutron scattering studies on the AMPA receptor GluA2 in the resting, AMPA-bound and GYKI-53655-bound states.

Authors:  Andreas Haahr Larsen; Jerzy Dorosz; Thor Seneca Thorsen; Nicolai Tidemand Johansen; Tamim Darwish; Søren Roi Midtgaard; Lise Arleth; Jette Sandholm Kastrup
Journal:  IUCrJ       Date:  2018-10-11       Impact factor: 4.769

9.  Structure and Dynamics of the Central Lipid Pool and Proteins of the Bacterial Holo-Translocon.

Authors:  Remy Martin; Andreas Haahr Larsen; Robin Adam Corey; Søren Roi Midtgaard; Henrich Frielinghaus; Christiane Schaffitzel; Lise Arleth; Ian Collinson
Journal:  Biophys J       Date:  2019-04-09       Impact factor: 4.033

10.  Probing solution structure of the pentameric ligand-gated ion channel GLIC by small-angle neutron scattering.

Authors:  Marie Lycksell; Urška Rovšnik; Cathrine Bergh; Nicolai T Johansen; Anne Martel; Lionel Porcar; Lise Arleth; Rebecca J Howard; Erik Lindahl
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-14       Impact factor: 11.205

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