Literature DB >> 29169778

15N CEST data and traditional model-free analysis capture fast internal dynamics of DJ-1.

Jonathan Catazaro1, Tessa Andrews1, Nicole M Milkovic2, Jiusheng Lin2, Austin J Lowe1, Mark A Wilson2, Robert Powers3.   

Abstract

Previous studies have shown that relaxation parameters and fast protein dynamics can be quickly elucidated from 15N-CEST experiments [1]. Longitudinal R1 and transverse R2 values were reliably derived from fitting of CEST profiles. Herein we show that 15N-CEST experiments and traditional modelfree analysis provide the internal dynamics of three states of human protein DJ-1 at physiological temperature. The chemical exchange profiles show the absence of a minor state conformation and, in conjunction with 1H-15N NOEs, show increased mobility. R1 and R2 values remained relatively unchanged at the three naturally occurring oxidation states of DJ-1, but exhibit striking NOE differences. The NOE data was, therefore, essential in determining the internal motions of the DJ-1 proteins. To the authors' knowledge, we present the first study that combines 15N CEST data with traditional model-free analyses in the study of a biological system and affirm that more 'lean' model-free approaches should be used cautiously.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CEST; DJ-1; NMR; Protein dynamics

Mesh:

Substances:

Year:  2017        PMID: 29169778      PMCID: PMC5817017          DOI: 10.1016/j.ab.2017.11.012

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  15 in total

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Review 5.  New Views of Functionally Dynamic Proteins by Solution NMR Spectroscopy.

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Authors:  Karim Bahmed; Samia Boukhenouna; Loukmane Karim; Tessa Andrews; Jiusheng Lin; Robert Powers; Mark A Wilson; Chih-Ru Lin; Elise Messier; Nichole Reisdorph; Roger L Powell; Hsin-Yao Tang; Robert J Mason; Gerard J Criner; Beata Kosmider
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