Literature DB >> 29168318

Validation of X-ray Wavefunction Refinement.

Magdalena Woińska1, Dylan Jayatilaka2, Birger Dittrich3, Ralf Flaig4, Peter Luger5, Krzysztof Woźniak1, Paulina M Dominiak1, Simon Grabowsky6.   

Abstract

In this work, the quality of the electron density in crystals reconstructed by the multipolar model (MM) and by X-ray wavefunction refinement (XWR) is tested on a set of high-resolution X-ray diffraction data sets of four amino acids and six tripeptides. It results in the first thorough validation of XWR. Agreement statistics, figures of merit, residual- and deformation-density maps, as well as atomic displacement parameters are used to measure the quality of the reconstruction relative to the measured structure factors. Topological analysis of the reconstructed density is carried out to obtain atomic and bond-topological properties, which are subsequently compared to the values derived from benchmarking periodic DFT geometry optimizations. XWR is simultaneously in better agreement than the MM with both benchmarking theory and the measured diffraction pattern. In particular, the obvious problems with the description of polar bonds in the MM are significantly reduced by using XWR. Similarly, modeling of electron density in the vicinity of hydrogen atoms with XWR is visibly improved.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  X-ray diffraction; amino acids; electron density; quantum chemistry; quantum crystallography

Mesh:

Year:  2017        PMID: 29168318     DOI: 10.1002/cphc.201700810

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  7 in total

1.  lamaGOET: an interface for quantum crystallography.

Authors:  Lorraine A Malaspina; Alessandro Genoni; Simon Grabowsky
Journal:  J Appl Crystallogr       Date:  2021-04-16       Impact factor: 3.304

2.  Energetics of interactions in the solid state of 2-hydroxy-8-X-quinoline derivatives (X = Cl, Br, I, S-Ph): comparison of Hirshfeld atom, X-ray wavefunction and multipole refinements.

Authors:  Magdalena Woinska; Monika Wanat; Przemyslaw Taciak; Tomasz Pawinski; Wladek Minor; Krzysztof Wozniak
Journal:  IUCrJ       Date:  2019-07-15       Impact factor: 4.769

3.  π-Hole bonding in a new co-crystal hydrate of gallic acid and pyrazine: static and dynamic charge density analysis.

Authors:  Rumpa Pal; Christian Jelsch; Koichi Momma; Simon Grabowsky
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2022-03-23

4.  Accurate crystal structures and chemical properties from NoSpherA2.

Authors:  Florian Kleemiss; Oleg V Dolomanov; Michael Bodensteiner; Norbert Peyerimhoff; Laura Midgley; Luc J Bourhis; Alessandro Genoni; Lorraine A Malaspina; Dylan Jayatilaka; John L Spencer; Fraser White; Bernhard Grundkötter-Stock; Simon Steinhauer; Dieter Lentz; Horst Puschmann; Simon Grabowsky
Journal:  Chem Sci       Date:  2020-11-09       Impact factor: 9.825

5.  Refinement of organic crystal structures with multipolar electron scattering factors.

Authors:  Barbara Gruza; Michał Leszek Chodkiewicz; Joanna Krzeszczakowska; Paulina Maria Dominiak
Journal:  Acta Crystallogr A Found Adv       Date:  2020-01-01       Impact factor: 2.290

6.  Relativistic Hirshfeld atom refinement of an organo-gold(I) compound.

Authors:  Sylwia Pawlędzio; Maura Malinska; Magdalena Woińska; Jakub Wojciechowski; Lorraine Andrade Malaspina; Florian Kleemiss; Simon Grabowsky; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2021-05-26       Impact factor: 4.769

7.  The advanced treatment of hydrogen bonding in quantum crystallography.

Authors:  Lorraine A Malaspina; Alessandro Genoni; Dylan Jayatilaka; Michael J Turner; Kunihisa Sugimoto; Eiji Nishibori; Simon Grabowsky
Journal:  J Appl Crystallogr       Date:  2021-04-16       Impact factor: 3.304

  7 in total

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