| Literature DB >> 29168318 |
Magdalena Woińska1, Dylan Jayatilaka2, Birger Dittrich3, Ralf Flaig4, Peter Luger5, Krzysztof Woźniak1, Paulina M Dominiak1, Simon Grabowsky6.
Abstract
In this work, the quality of the electron density in crystals reconstructed by the multipolar model (MM) and by X-ray wavefunction refinement (XWR) is tested on a set of high-resolution X-ray diffraction data sets of four amino acids and six tripeptides. It results in the first thorough validation of XWR. Agreement statistics, figures of merit, residual- and deformation-density maps, as well as atomic displacement parameters are used to measure the quality of the reconstruction relative to the measured structure factors. Topological analysis of the reconstructed density is carried out to obtain atomic and bond-topological properties, which are subsequently compared to the values derived from benchmarking periodic DFT geometry optimizations. XWR is simultaneously in better agreement than the MM with both benchmarking theory and the measured diffraction pattern. In particular, the obvious problems with the description of polar bonds in the MM are significantly reduced by using XWR. Similarly, modeling of electron density in the vicinity of hydrogen atoms with XWR is visibly improved.Entities:
Keywords: X-ray diffraction; amino acids; electron density; quantum chemistry; quantum crystallography
Mesh:
Year: 2017 PMID: 29168318 DOI: 10.1002/cphc.201700810
Source DB: PubMed Journal: Chemphyschem ISSN: 1439-4235 Impact factor: 3.102