Literature DB >> 29160693

Cross-Linking Mass Spectrometry: An Emerging Technology for Interactomics and Structural Biology.

Clinton Yu1, Lan Huang1.   

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Year:  2017        PMID： 29160693      PMCID： PMC6022837          DOI： 10.1021/acs.analchem.7b04431

Source DB:  PubMed          Journal:  Anal Chem        ISSN： 0003-2700            Impact factor:   6.986


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  241 in total

1.  An integrated chemical cross-linking and mass spectrometry approach to study protein complex architecture and function.

Authors:  Jie Luo; James Fishburn; Steven Hahn; Jeffrey Ranish
Journal:  Mol Cell Proteomics       Date:  2011-11-07       Impact factor: 5.911

2.  Improved single-step enrichment methods of cross-linked products for protein structure analysis and protein interaction mapping.

Authors:  Rico Schmidt; Andrea Sinz
Journal:  Anal Bioanal Chem       Date:  2017-01-12       Impact factor: 4.142

3.  An Integrated Mass Spectrometry Based Approach to Probe the Structure of the Full-Length Wild-Type Tetrameric p53 Tumor Suppressor.

Authors:  Christian Arlt; Vanessa Flegler; Christian H Ihling; Mathias Schäfer; Iris Thondorf; Andrea Sinz
Journal:  Angew Chem Int Ed Engl       Date:  2016-11-29       Impact factor: 15.336

4.  The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress.

Authors:  Xiaorong Wang; Ilan E Chemmama; Clinton Yu; Alexander Huszagh; Yue Xu; Rosa Viner; Sarah A Block; Peter Cimermancic; Scott D Rychnovsky; Yihong Ye; Andrej Sali; Lan Huang
Journal:  J Biol Chem       Date:  2017-08-15       Impact factor: 5.157

5.  Protein interfaces of the conserved Nup84 complex from Chaetomium thermophilum shown by crosslinking mass spectrometry and electron microscopy.

Authors:  Karsten Thierbach; Alexander von Appen; Matthias Thoms; Martin Beck; Dirk Flemming; Ed Hurt
Journal:  Structure       Date:  2013-08-15       Impact factor: 5.006

6.  Dissociation behavior of a bifunctional tempo-active ester reagent for peptide structure analysis by free radical initiated peptide sequencing (FRIPS) mass spectrometry.

Authors:  Christian Ihling; Francesco Falvo; Isabel Kratochvil; Andrea Sinz; Mathias Schäfer
Journal:  J Mass Spectrom       Date:  2015-02       Impact factor: 1.982

7.  Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography.

Authors:  Alexander Leitner; Roland Reischl; Thomas Walzthoeni; Franz Herzog; Stefan Bohn; Friedrich Förster; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2012-01-27       Impact factor: 5.911

8.  Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains.

Authors:  Eric Thierry; Delphine Guilligay; Jan Kosinski; Thomas Bock; Stephanie Gaudon; Adam Round; Alexander Pflug; Narin Hengrung; Kamel El Omari; Florence Baudin; Darren J Hart; Martin Beck; Stephen Cusack
Journal:  Mol Cell       Date:  2015-12-17       Impact factor: 17.970

9.  Developing an Acidic Residue Reactive and Sulfoxide-Containing MS-Cleavable Homobifunctional Cross-Linker for Probing Protein-Protein Interactions.

Authors:  Craig B Gutierrez; Clinton Yu; Eric J Novitsky; Alexander S Huszagh; Scott D Rychnovsky; Lan Huang
Journal:  Anal Chem       Date:  2016-07-29       Impact factor: 6.986

10.  Isotopically-coded short-range hetero-bifunctional photo-reactive crosslinkers for studying protein structure.

Authors:  Nicholas I Brodie; Karl A T Makepeace; Evgeniy V Petrotchenko; Christoph H Borchers
Journal:  J Proteomics       Date:  2014-09-02       Impact factor: 4.044
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  76 in total

1.  Cross-linking Proteomics Indicates Effects of Simvastatin on the TLR2 Interactome and Reveals ACTR1A as a Novel Regulator of the TLR2 Signal Cascade.

Authors:  Abu Hena Mostafa Kamal; Jim J Aloor; Michael B Fessler; Saiful M Chowdhury
Journal:  Mol Cell Proteomics       Date:  2019-06-20       Impact factor: 5.911

2.  Development of a Novel Sulfoxide-Containing MS-Cleavable Homobifunctional Cysteine-Reactive Cross-Linker for Studying Protein-Protein Interactions.

Authors:  Craig B Gutierrez; Sarah A Block; Clinton Yu; Stephanie M Soohoo; Alexander S Huszagh; Scott D Rychnovsky; Lan Huang
Journal:  Anal Chem       Date:  2018-06-05       Impact factor: 6.986

3.  Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus.

Authors:  Lei Lu; Robert J Millikin; Stefan K Solntsev; Zach Rolfs; Mark Scalf; Michael R Shortreed; Lloyd M Smith
Journal:  J Proteome Res       Date:  2018-06-11       Impact factor: 4.466

4.  Biochemical Reduction of the Topology of the Diverse WDR76 Protein Interactome.

Authors:  Gerald Dayebgadoh; Mihaela E Sardiu; Laurence Florens; Michael P Washburn
Journal:  J Proteome Res       Date:  2019-08-09       Impact factor: 4.466

5.  Probing H2O2-mediated Structural Dynamics of the Human 26S Proteasome Using Quantitative Cross-linking Mass Spectrometry (QXL-MS).

Authors:  Clinton Yu; Xiaorong Wang; Alexander Scott Huszagh; Rosa Viner; Eric Novitsky; Scott D Rychnovsky; Lan Huang
Journal:  Mol Cell Proteomics       Date:  2019-02-05       Impact factor: 5.911

6.  Epitope and Paratope Mapping of PD-1/Nivolumab by Mass Spectrometry-Based Hydrogen-Deuterium Exchange, Cross-linking, and Molecular Docking.

Authors:  Mengru Mira Zhang; Richard Y-C Huang; Brett R Beno; Ekaterina G Deyanova; Jing Li; Guodong Chen; Michael L Gross
Journal:  Anal Chem       Date:  2020-06-10       Impact factor: 6.986

7.  Synthesis of CID-cleavable protein crosslinking agents containing quaternary amines for structural mass spectrometry.

Authors:  Susan E Hagen; Kun Liu; Yafei Jin; Lolita Piersimoni; Philip C Andrews; Hollis D Showalter
Journal:  Org Biomol Chem       Date:  2018-09-26       Impact factor: 3.876

Review 8.  Covalent labeling-mass spectrometry with non-specific reagents for studying protein structure and interactions.

Authors:  Patanachai Limpikirati; Tianying Liu; Richard W Vachet
Journal:  Methods       Date:  2018-04-07       Impact factor: 3.608

9.  Photocaged Quinone Methide Crosslinkers for Light-Controlled Chemical Crosslinking of Protein-Protein and Protein-DNA Complexes.

Authors:  Jun Liu; Lingchao Cai; Wei Sun; Rujin Cheng; Nanxi Wang; Ling Jin; Sharon Rozovsky; Ian B Seiple; Lei Wang
Journal:  Angew Chem Int Ed Engl       Date:  2019-11-08       Impact factor: 15.336

Review 10.  Global and site-specific analysis of protein glycosylation in complex biological systems with Mass Spectrometry.

Authors:  Haopeng Xiao; Fangxu Sun; Suttipong Suttapitugsakul; Ronghu Wu
Journal:  Mass Spectrom Rev       Date:  2019-01-03       Impact factor: 10.946
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