Literature DB >> 29158552

Care and cost consequences of pediatric whole genome sequencing compared to chromosome microarray.

Robin Z Hayeems1,2, Jasmin Bhawra3, Kate Tsiplova4, M Stephen Meyn5,6,7, Nasim Monfared5,8, Sarah Bowdin5,7, D James Stavropoulos9,10, Christian R Marshall9,10,11, Raveen Basran9, Cheryl Shuman5,6,8, Shinya Ito12, Iris Cohn12, Courtney Hum13, Marta Girdea14, Michael Brudno14,15,16, Ronald D Cohn6,7,16,17, Stephen W Scherer6,11,16,18, Wendy J Ungar4,19.   

Abstract

The clinical use of whole-genome sequencing (WGS) is expected to alter pediatric medical management. The study aimed to describe the type and cost of healthcare activities following pediatric WGS compared to chromosome microarray (CMA). Healthcare activities prompted by WGS and CMA were ascertained for 101 children with developmental delay over 1 year. Activities following receipt of non-diagnostic CMA were compared to WGS diagnostic and non-diagnostic results. Activities were costed in 2016 Canadian dollars (CDN). Ongoing care accounted for 88.6% of post-test activities. The mean number of lab tests was greater following CMA than WGS (0.55 vs. 0.09; p = 0.007). The mean number of specialist visits was greater following WGS than CMA (0.41 vs. 0; p = 0.016). WGS results (diagnostic vs. non-diagnostic) modified the effect of test type on mean number of activities (p < 0.001). The cost of activities prompted by diagnostic WGS exceeded $557CDN for 10% of cases. In complex pediatric care, CMA prompted additional diagnostic investigations while WGS prompted tailored care guided by genotypic variants. Costs for prompted activities were low for the majority and constitute a small proportion of total test costs. Optimal use of WGS depends on robust evaluation of downstream care and cost consequences.

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Year:  2017        PMID: 29158552      PMCID: PMC5865210          DOI: 10.1038/s41431-017-0020-3

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  37 in total

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Journal:  Nature       Date:  2014-06-04       Impact factor: 49.962

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Journal:  Genet Med       Date:  2014-06-05       Impact factor: 8.822

10.  How physicians use array comparative genomic hybridization results to guide patient management in children with developmental delay.

Authors:  Jennifer Saam; Jim Gudgeon; Emily Aston; Arthur R Brothman
Journal:  Genet Med       Date:  2008-03       Impact factor: 8.822

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  12 in total

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Journal:  NPJ Genom Med       Date:  2020-09-10       Impact factor: 8.617

3.  Project Baby Bear: Rapid precision care incorporating rWGS in 5 California children's hospitals demonstrates improved clinical outcomes and reduced costs of care.

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5.  Juvenile idiopathic arthritis associated with a mutation in GATA3.

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7.  Utilization of Whole Exome Sequencing Data to Identify Clinically Relevant Pharmacogenomic Variants in Pediatric Inflammatory Bowel Disease.

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8.  Cost Efficacy of Rapid Whole Genome Sequencing in the Pediatric Intensive Care Unit.

Authors:  Erica Sanford Kobayashi; Bryce Waldman; Branden M Engorn; Katherine Perofsky; Erika Allred; Benjamin Briggs; Chelsea Gatcliffe; Nanda Ramchandar; Jeffrey J Gold; Ami Doshi; Elizabeth G Ingulli; Courtney D Thornburg; Wendy Benson; Lauge Farnaes; Shimul Chowdhury; Seema Rego; Charlotte Hobbs; Stephen F Kingsmore; David P Dimmock; Nicole G Coufal
Journal:  Front Pediatr       Date:  2022-01-24       Impact factor: 3.418

9.  Genome-Wide Sequencing for Unexplained Developmental Disabilities or Multiple Congenital Anomalies: A Health Technology Assessment.

Authors: 
Journal:  Ont Health Technol Assess Ser       Date:  2020-03-06

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