Literature DB >> 29158545

A potent Cas9-derived gene activator for plant and mammalian cells.

Zhenxiang Li1, Dandan Zhang1, Xiangyu Xiong1, Bingyu Yan1, Wei Xie1,2, Jen Sheen3, Jian-Feng Li4,5,6.   

Abstract

Overexpression of complementary DNA represents the most commonly used gain-of-function approach for interrogating gene functions and for manipulating biological traits. However, this approach is challenging and inefficient for multigene expression due to increased labour for cloning, limited vector capacity, requirement of multiple promoters and terminators, and variable transgene expression levels. Synthetic transcriptional activators provide a promising alternative strategy for gene activation by tethering an autonomous transcription activation domain (TAD) to an intended gene promoter at the endogenous genomic locus through a programmable DNA-binding module. Among the known custom DNA-binding modules, the nuclease-dead Streptococcus pyogenes Cas9 (dCas9) protein, which recognizes a specific DNA target through base pairing between a synthetic guide RNA and DNA, outperforms zinc-finger proteins and transcription activator-like effectors, both of which target through protein-DNA interactions 1 . Recently, three potent dCas9-based transcriptional activation systems, namely VPR, SAM and SunTag, have been developed for animal cells 2-6 . However, an efficient dCas9-based transcriptional activation platform is still lacking for plant cells 7-9 . Here, we developed a new potent dCas9-TAD, named dCas9-TV, through plant cell-based screens. dCas9-TV confers far stronger transcriptional activation of single or multiple target genes than the routinely used dCas9-VP64 activator in both plant and mammalian cells.

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Year:  2017        PMID: 29158545      PMCID: PMC5894343          DOI: 10.1038/s41477-017-0046-0

Source DB:  PubMed          Journal:  Nat Plants        ISSN: 2055-0278            Impact factor:   17.352


  26 in total

1.  The C terminus of AvrXa10 can be replaced by the transcriptional activation domain of VP16 from the herpes simplex virus.

Authors:  W Zhu; B Yang; N Wills; L B Johnson; F F White
Journal:  Plant Cell       Date:  1999-09       Impact factor: 11.277

2.  Activation domains for controlling plant gene expression using designed transcription factors.

Authors:  Jianquan Li; Ryan Blue; Bryan Zeitler; Tonya L Strange; Jocelynn R Pearl; David H Huizinga; Steve Evans; Philip D Gregory; Fyodor D Urnov; Joseph F Petolino
Journal:  Plant Biotechnol J       Date:  2013-03-22       Impact factor: 9.803

3.  A CRISPR/Cas9 Toolbox for Multiplexed Plant Genome Editing and Transcriptional Regulation.

Authors:  Levi G Lowder; Dengwei Zhang; Nicholas J Baltes; Joseph W Paul; Xu Tang; Xuelian Zheng; Daniel F Voytas; Tzung-Fu Hsieh; Yong Zhang; Yiping Qi
Journal:  Plant Physiol       Date:  2015-08-21       Impact factor: 8.340

4.  Versatile in vivo regulation of tumor phenotypes by dCas9-mediated transcriptional perturbation.

Authors:  Christian J Braun; Peter M Bruno; Max A Horlbeck; Luke A Gilbert; Jonathan S Weissman; Michael T Hemann
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-20       Impact factor: 11.205

5.  Epitope-tagged protein-based artificial miRNA screens for optimized gene silencing in plants.

Authors:  Jian-Feng Li; Dandan Zhang; Jen Sheen
Journal:  Nat Protoc       Date:  2014-03-27       Impact factor: 13.491

6.  Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro E Trevino; Julia Joung; Omar O Abudayyeh; Clea Barcena; Patrick D Hsu; Naomi Habib; Jonathan S Gootenberg; Hiroshi Nishimasu; Osamu Nureki; Feng Zhang
Journal:  Nature       Date:  2014-12-10       Impact factor: 49.962

7.  A CRISPR-Cpf1 system for efficient genome editing and transcriptional repression in plants.

Authors:  Xu Tang; Levi G Lowder; Tao Zhang; Aimee A Malzahn; Xuelian Zheng; Daniel F Voytas; Zhaohui Zhong; Yiyi Chen; Qiurong Ren; Qian Li; Elida R Kirkland; Yong Zhang; Yiping Qi
Journal:  Nat Plants       Date:  2017-02-17       Impact factor: 15.793

8.  Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system.

Authors:  Albert W Cheng; Haoyi Wang; Hui Yang; Linyu Shi; Yarden Katz; Thorold W Theunissen; Sudharshan Rangarajan; Chikdu S Shivalila; Daniel B Dadon; Rudolf Jaenisch
Journal:  Cell Res       Date:  2013-08-27       Impact factor: 25.617

9.  Comparison of Cas9 activators in multiple species.

Authors:  Alejandro Chavez; Marcelle Tuttle; Benjamin W Pruitt; Ben Ewen-Campen; Raj Chari; Dmitry Ter-Ovanesyan; Sabina J Haque; Ryan J Cecchi; Emma J K Kowal; Joanna Buchthal; Benjamin E Housden; Norbert Perrimon; James J Collins; George Church
Journal:  Nat Methods       Date:  2016-05-23       Impact factor: 28.547

10.  Protein-stabilizing and cell-penetrating properties of α-helix domain of 30Kc19 protein.

Authors:  Jina Ryu; Hyoju Kim; Hee Ho Park; Hong Jai Lee; Ju Hyun Park; Won Jong Rhee; Tai Hyun Park
Journal:  Biotechnol J       Date:  2016-08-12       Impact factor: 4.677

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  46 in total

Review 1.  The genetic arms race between plant and Xanthomonas: lessons learned from TALE biology.

Authors:  Jiao Xue; Zhanhua Lu; Wei Liu; Shiguang Wang; Dongbai Lu; Xiaofei Wang; Xiuying He
Journal:  Sci China Life Sci       Date:  2020-07-10       Impact factor: 6.038

2.  Split-TALE: A TALE-Based Two-Component System for Synthetic Biology Applications in Planta.

Authors:  Tom Schreiber; Anja Prange; Tina Hoppe; Alain Tissier
Journal:  Plant Physiol       Date:  2019-01-14       Impact factor: 8.340

3.  CRISPR-Act3.0 for highly efficient multiplexed gene activation in plants.

Authors:  Changtian Pan; Xincheng Wu; Kasey Markel; Aimee A Malzahn; Neil Kundagrami; Simon Sretenovic; Yingxiao Zhang; Yanhao Cheng; Patrick M Shih; Yiping Qi
Journal:  Nat Plants       Date:  2021-06-24       Impact factor: 15.793

Review 4.  Dead Cas(t) light on new life: CRISPRa-mediated reprogramming of somatic cells into neurons.

Authors:  Meiling Zhou; Yu Cao; Ming Sui; Xiji Shu; Feng Wan; Bin Zhang
Journal:  Cell Mol Life Sci       Date:  2022-05-24       Impact factor: 9.261

5.  Highly efficient activation of endogenous gene in grape using CRISPR/dCas9-based transcriptional activators.

Authors:  Chong Ren; Huayang Li; Yanfei Liu; Shaohua Li; Zhenchang Liang
Journal:  Hortic Res       Date:  2022-01-18       Impact factor: 6.793

Review 6.  Conditional and tissue-specific approaches to dissect essential mechanisms in plant development.

Authors:  Marie L Pfeiffer; Joanna Winkler; Daniël Van Damme; Thomas B Jacobs; Moritz K Nowack
Journal:  Curr Opin Plant Biol       Date:  2021-10-13       Impact factor: 7.834

Review 7.  In vivo epigenome editing and transcriptional modulation using CRISPR technology.

Authors:  Cia-Hin Lau; Yousin Suh
Journal:  Transgenic Res       Date:  2018-10-04       Impact factor: 2.788

8.  Manipulating gene translation in plants by CRISPR-Cas9-mediated genome editing of upstream open reading frames.

Authors:  Xiaomin Si; Huawei Zhang; Yanpeng Wang; Kunling Chen; Caixia Gao
Journal:  Nat Protoc       Date:  2020-01-08       Impact factor: 13.491

Review 9.  Perspectives for epigenetic editing in crops.

Authors:  S Selma; D Orzáez
Journal:  Transgenic Res       Date:  2021-04-23       Impact factor: 2.788

10.  Genome Editing and Designer Crops for the Future.

Authors:  Sumi Rana; Pooja Rani Aggarwal; Varsa Shukla; Urmi Giri; Shubham Verma; Mehanathan Muthamilarasan
Journal:  Methods Mol Biol       Date:  2022
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