Literature DB >> 34653951

Conditional and tissue-specific approaches to dissect essential mechanisms in plant development.

Marie L Pfeiffer1, Joanna Winkler1, Daniël Van Damme1, Thomas B Jacobs2, Moritz K Nowack3.   

Abstract

Reverse genetics approaches are routinely used to investigate gene function. However, mutations, especially in critical genes, can lead to pleiotropic effects as severe as lethality, thus limiting functional studies in specific contexts. Approaches that allow for modifications of genes or gene products in a specific spatial or temporal setting can overcome these limitations. The advent of CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) technologies has not only revolutionized targeted genome modification in plants but also enabled new possibilities for inducible and tissue-specific manipulation of gene functions at the DNA and RNA levels. In addition, novel approaches for the direct manipulation of target proteins have been introduced in plant systems. Here, we review the current development in tissue-specific and conditional manipulation approaches at the DNA, RNA, and protein levels.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CRISPR; CRISPR-Activation; Conditional; Degron; Gene silencing; Nanobodies; Tissue-specific

Mesh:

Substances:

Year:  2021        PMID: 34653951      PMCID: PMC7612331          DOI: 10.1016/j.pbi.2021.102119

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  59 in total

1.  Direct modulation of protein level in Arabidopsis.

Authors:  Lei Su; Aining Li; Huali Li; Chengcai Chu; Jin-Long Qiu
Journal:  Mol Plant       Date:  2013-03-02       Impact factor: 13.164

Review 2.  DNA methylation in plants: mechanisms and tools for targeted manipulation.

Authors:  Javier Gallego-Bartolomé
Journal:  New Phytol       Date:  2020-04-13       Impact factor: 10.151

3.  Tomato fruit as a model for tissue-specific gene silencing in crop plants.

Authors:  Ari Feder; Sarah Jensen; Anquan Wang; Lance Courtney; Lesley Middleton; Joyce Van Eck; Yongsheng Liu; James J Giovannoni
Journal:  Hortic Res       Date:  2020-09-01       Impact factor: 6.793

4.  Metabolic Labeling of RNAs Uncovers Hidden Features and Dynamics of the Arabidopsis Transcriptome.

Authors:  Emese Xochitl Szabo; Philipp Reichert; Marie-Kristin Lehniger; Marilena Ohmer; Marcella de Francisco Amorim; Udo Gowik; Christian Schmitz-Linneweber; Sascha Laubinger
Journal:  Plant Cell       Date:  2020-02-14       Impact factor: 11.277

5.  An Arabidopsis tissue-specific RNAi method for studying genes essential to mitosis.

Authors:  Brunilís Burgos-Rivera; R Kelly Dawe
Journal:  PLoS One       Date:  2012-12-07       Impact factor: 3.240

6.  RNA virus interference via CRISPR/Cas13a system in plants.

Authors:  Rashid Aman; Zahir Ali; Haroon Butt; Ahmed Mahas; Fatimah Aljedaani; Muhammad Zuhaib Khan; Shouwei Ding; Magdy Mahfouz
Journal:  Genome Biol       Date:  2018-01-04       Impact factor: 13.583

7.  Heat-shock-inducible CRISPR/Cas9 system generates heritable mutations in rice.

Authors:  Soumen Nandy; Bhuvan Pathak; Shan Zhao; Vibha Srivastava
Journal:  Plant Direct       Date:  2019-05-29

8.  Cre-Controlled CRISPR mutagenesis provides fast and easy conditional gene inactivation in zebrafish.

Authors:  Stefan Hans; Daniela Zöller; Juliane Hammer; Johanna Stucke; Sandra Spieß; Gokul Kesavan; Volker Kroehne; Juan Sebastian Eguiguren; Diana Ezhkova; Andreas Petzold; Andreas Dahl; Michael Brand
Journal:  Nat Commun       Date:  2021-02-18       Impact factor: 14.919

9.  Engineered degradation of EYFP-tagged CENH3 via the 26S proteasome pathway in plants.

Authors:  Eberhard Sorge; Dmitri Demidov; Inna Lermontova; Andreas Houben; Udo Conrad
Journal:  PLoS One       Date:  2021-02-12       Impact factor: 3.240

Review 10.  Anti-CRISPR protein applications: natural brakes for CRISPR-Cas technologies.

Authors:  Rafael Pinilla-Redondo; Bálint Csörgő; Nicole D Marino; Joseph Bondy-Denomy
Journal:  Nat Methods       Date:  2020-03-16       Impact factor: 28.547

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