Literature DB >> 29156498

First things first: risk model performance metrics should reflect the clinical application.

Kathleen F Kerr1, Holly Janes2.   

Abstract

Developing new measures of risk model performance is an active line of research, often motivated by the conventional wisdom that area under the ROC curve is an 'insensitive' measure of the additional predictive capacity offered by new biomarkers. Without endorsing area under the ROC curve, we argue that this charge is not substantiated. Three articles in this issue discuss alternative metrics of risk model performance: NRI(p) (two-category net reclassification index at the event rate), integrated discrimination index, and R-squared statistics. Guided by the principle that performance metrics should match the intended use of a risk prediction model, we argue that routine use of these indices is not justified. Instead, we recommend decision-theoretic measures to evaluate risk prediction models for applications in which clinically relevant risk thresholds have been established for classifying individuals. In the absence of established risk thresholds, additional research is needed to develop suitable metrics.
Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

Entities:  

Keywords:  biomarkers; incremental value; net benefit; relative utility; risk prediction

Mesh:

Year:  2017        PMID: 29156498      PMCID: PMC5726302          DOI: 10.1002/sim.7341

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  22 in total

Review 1.  Limitations of the odds ratio in gauging the performance of a diagnostic, prognostic, or screening marker.

Authors:  Margaret Sullivan Pepe; Holly Janes; Gary Longton; Wendy Leisenring; Polly Newcomb
Journal:  Am J Epidemiol       Date:  2004-05-01       Impact factor: 4.897

2.  The numerical measure of the success of predictions.

Authors:  C S Peirce
Journal:  Science       Date:  1884-11-14       Impact factor: 47.728

3.  Net risk reclassification p values: valid or misleading?

Authors:  Margaret S Pepe; Holly Janes; Christopher I Li
Journal:  J Natl Cancer Inst       Date:  2014-03-28       Impact factor: 13.506

4.  Simpson's paradox in the integrated discrimination improvement.

Authors:  J Chipman; D Braun
Journal:  Stat Med       Date:  2016-01-05       Impact factor: 2.373

5.  The threshold approach to clinical decision making.

Authors:  S G Pauker; J P Kassirer
Journal:  N Engl J Med       Date:  1980-05-15       Impact factor: 91.245

6.  Testing for improvement in prediction model performance.

Authors:  Margaret Sullivan Pepe; Kathleen F Kerr; Gary Longton; Zheyu Wang
Journal:  Stat Med       Date:  2013-01-07       Impact factor: 2.373

7.  Decision curve analysis: a novel method for evaluating prediction models.

Authors:  Andrew J Vickers; Elena B Elkin
Journal:  Med Decis Making       Date:  2006 Nov-Dec       Impact factor: 2.583

8.  Assessing the value of risk predictions by using risk stratification tables.

Authors:  Holly Janes; Margaret S Pepe; Wen Gu
Journal:  Ann Intern Med       Date:  2008-11-18       Impact factor: 25.391

Review 9.  Net reclassification indices for evaluating risk prediction instruments: a critical review.

Authors:  Kathleen F Kerr; Zheyu Wang; Holly Janes; Robyn L McClelland; Bruce M Psaty; Margaret S Pepe
Journal:  Epidemiology       Date:  2014-01       Impact factor: 4.822

10.  One statistical test is sufficient for assessing new predictive markers.

Authors:  Andrew J Vickers; Angel M Cronin; Colin B Begg
Journal:  BMC Med Res Methodol       Date:  2011-01-28       Impact factor: 4.615

View more
  3 in total

1.  Cardiovascular disease: The rise of the genetic risk score.

Authors:  Joshua W Knowles; Euan A Ashley
Journal:  PLoS Med       Date:  2018-03-30       Impact factor: 11.069

2.  Three myths about risk thresholds for prediction models.

Authors:  Laure Wynants; Maarten van Smeden; David J McLernon; Dirk Timmerman; Ewout W Steyerberg; Ben Van Calster
Journal:  BMC Med       Date:  2019-10-25       Impact factor: 8.775

3.  Consistency of variety of machine learning and statistical models in predicting clinical risks of individual patients: longitudinal cohort study using cardiovascular disease as exemplar.

Authors:  Yan Li; Matthew Sperrin; Darren M Ashcroft; Tjeerd Pieter van Staa
Journal:  BMJ       Date:  2020-11-04
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.