Literature DB >> 29152368

Synthesis, crystal structure and Hirshfeld surface analysis of a polymeric bis-muthate(III) halide complex, (C6H6N3)2[BiCl5]·2H2O.

Chaima Boukoum1, Zouhaier Aloui1, Valeria Ferretti2, Sonia Abid1.   

Abstract

The synthesis and the crystal structure of a new halide-bridged polymer, namely catena-poly[bis-(1,2,3-benzotriazolium) [[tetra-chlorido-bis-muth(III)]-μ-chlorido] dihydrate], {(C6H6N3)2[BiCl5]·2H2O} n are reported. The structure comprises polyanionic zigzag chains of formula [(BiCl5)2-] n running along the c-axis direction. The 1,2,3-benzotriazolium cations are linked between these polymer chains, via the water mol-ecules, giving rise to left- and right-handed helical chains. Hirshfeld surface analysis and fingerprint plots were used to decode the inter-molecular inter-actions in the crystal network and determine the contribution of the component units for the construction of the three-dimensional architecture.

Entities:  

Keywords:  Hirshfeld surface analysis; benzotriazole; crystal structure; halogenobismuthates

Year:  2017        PMID: 29152368      PMCID: PMC5683508          DOI: 10.1107/S2056989017015134

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Bismuthhalide complexes are of contemporary inter­est because of their structural diversity and numerous promising physical properties such as dielectric, ferroelectric, ferro­elastic, non-linear optical and thermochromism (Bator et al., 1997 ▸; Bednarska-Bolek et al., 2000 ▸; Sobczyk et al., 1997 ▸; Bator et al., 1998 ▸). Generally, in these compounds, the BiX 6 octa­hedra may join to form discrete (i.e. mononuclear) or extended (i.e. polynuclear) inorganic networks of corner-, edge-, or face-sharing octa­hedra, leading to an extensive family of bis­muth halogenoanions (Jakubas, 1986 ▸; Jakubas et al., 1988 ▸, 1995 ▸). A variety of organic cations, ring shaped or linear, have a strong impact on the arrangements of BiX 6 octa­hedra and the formation of hydrogen bonds (Dammak et al., 2015 ▸; Elfaleh & Kamoun, 2014 ▸). This class of compounds has also attracted much attention in the field of crystal engin­eering over the last decade on account of their capability for the creation of extended architectures via inter­molecular non-covalent binding inter­actions. (i.e. hydrogen bonding, ionic and π–π stacking inter­actions; Belter & Fronczek, 2013 ▸; Thirunavukkarasu et al., 2013 ▸; Aloui et al., 2015 ▸). As part of our studies in this area, we chose benzotriazole, which is an aromatic heterocyclic base with three protonatable nitro­gen atoms, as the organic cation.

Structural commentary

The single-crystal X-ray diffraction analysis shows that the title compound [C6H6N3]2[BiCl5]·2H2O, (I), crystallizes in the non-centrosymmetric space group Cmc21 and the asymmetric unit comprises one Bi3+ cation, four chlorine atoms, one water mol­ecule and one benzotriazolium cation (Fig. 1 ▸). The bis­muth atom is six-coordinated by four distinct chlorine atoms (Cl1, Cl2, Cl3, Cl4). The Bi—Cl bond lengths (Table 1 ▸) vary from 2.545 (3) to 2.674 (4) Å (ΔBi—Cl = 0.129 Å) and 2.757 (4) to 2.856 (4) Å (ΔBi—Cl = 0.099 Å) for non-bridging and bridging Cl atoms, respectively, which are comparable with values found in {(C2H7N4O)2[BiCl5] (Ferjani et al., 2012 ▸) and [NH3(CH2)6NH3]BiCl5 (Ouasri et al., 2013 ▸). The Cl—Bi—Cl bond angles in (I) range from 85.93 (17) to 91.88 (13)° (ΔCl—Bi—Cl =5.95°) and are less distorted than those observed in [NH3(CH2)6NH3]BiCl5 and [H2mdap][BiCl5] (Ouasri et al., 2013 ▸; Wang et al., 2017 ▸).
Figure 1

The asymmetric unit of (I) showing 50% displacement ellipsoids.

Table 1

Selected bond lengths (Å)

Bi1—Cl12.669 (3)Bi1—Cl4i 2.757 (4)
Bi1—Cl22.545 (3)Bi1—Cl42.856 (4)
Bi1—Cl32.674 (4)  

Symmetry code: (i) .

In the extended structure of (I), adjacent BiCl6 octa­hedra are connected through Cl4 and Cl4iii so as to form [(BiCl5)2−] polyanionic zigzag chains propagating along the c-axis direction, with the shortest intra­chain BiBi distance of 5.508 (1) Å and a Cl4Bi—Cl4ii angle of 89.61 (3)° (Fig. 2 ▸) The overall negative charges of the resulting polymers are counter-balanced by the protonated 1,2,3-benzotriazolium cations (Fig. 2 ▸ b). As usual, this aromatic amine is protonated at the N3 atom and the CC, N—N and C—N bond lengths vary from 1.358 (18) to 1.402 (15), 1.293 (15) to 1.308 (15) Å and 1.364 (16) to 1.370 (15) Å, respectively, which agree well with those observed in bis­(1,2,3-benzotriazolium) sulfate dihydrate (Randolph et al., 2013 ▸) and benzotriazolium picrate (Zeng et al., 2011 ▸).
Figure 2

(a) View of the [(BiCl5)2−] polyanionic zigzag chains in (I) along the c-axis direction. (b) Projection along the c axis of the structure of (I).

Supra­molecular features

The heterocyclic cations alternately bridge the water mol­ecules (O1W) via N—H⋯O hydrogen bonds, forming (benzo-OW) helical chains in a right- and left–handed sequence extending along the c-axis direction (Table 2 ▸, Fig. 2 ▸). The phenyl rings of adjacent chains are alternately stacked in a parallel-displaced face-to-face arrangement (Fig. 3 ▸), with centroid–centroid distances of 3.8675 (1) Å and an inter-planar spacing of 1.13 Å. The anionic and cationic chains are further assembled into a three-dimensional supra­molecular framework through N—H⋯O, O—H⋯Cl and C—H⋯Cl hydrogen bonds (Table 2 ▸, Fig. 3 ▸).
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1W 0.862.082.891 (17)157
N3—H3A⋯O1W ii 0.862.00 (2)2.767 (18)148
O1W—H11⋯Cl4iii 0.89 (11)2.47 (11)3.306 (13)157 (9)
O1W—H22⋯Cl30.90 (12)2.38 (12)3.268 (14)169 (11)
C5—H5⋯Cl1iv 0.932.733.603 (14)157

Symmetry codes: (ii) ; (iii) ; (iv) .

Figure 3

View of the infinite helical hydrogen-bonded chain in (I).

Hirshfeld surface analysis

The Hirshfeld surface (Wolff et al., 2012 ▸) mapped with a d norm function for the asymmetric unit for the title compounds clearly shows the red spots derived from H⋯O and H⋯Cl/Cl⋯H contacts (Fig. 4 ▸). The two-dimensional fingerprint plot shows that the H⋯Cl/Cl⋯H contacts associated with O—H⋯Cl hydrogen bonding appear to be the major contributor in the crystal packing (55.8%): these contacts are represented as regions in the top left (d e > d i, Cl⋯H) and bottom right (d e < d i, H⋯Cl) of the related plots in Fig. 5 ▸. Inter­actions of the type H⋯H appear in the middle of the scattered points in the fingerprint maps; they comprise 10.9% of the entire surface. The decomposition of the fingerprint plot shows that N⋯H/H⋯N, C⋯H/H⋯C, O⋯H/H⋯O and N⋯Cl/Cl⋯N contacts have percentage contributions of 7.8%, 6.5%, 4.5% and 4.3% respectively, of the total Hirshfeld surface. The CC contacts associated with π–π inter­actions amount to 3.4% of the surface: their presence is indicated by the appearance of red and blue triangles on the shape-indexed surfaces in Fig. 6 ▸. The Cl⋯Bi/Bi⋯Cl (3%) inter­actions are represented as points in the top area. The Cl⋯Cl, C⋯Cl/Cl⋯C, C⋯N, and N⋯N inter­actions are in the middle of the fingerprint plots, and comprise a very small contribution of 1.3%, 1.2%, 0.9% and 0.4%, respectively.
Figure 4

Hirshfeld surface mapped over d norm of (I).

Figure 5

Two-dimensional fingerprint plots for (I) showing contributions from different contacts.

Figure 6

Hirshfeld surface mapped over the shape index for (I) highlighting the regions involved in π-π stacking inter­actions.

The inter­molecular inter­actions were further evaluated by using the enrichment ratio (ER; Jelsch et al., 2014 ▸). The largest contribution to the Hirshfeld surface is from H⋯Cl/Cl⋯H contacts associated with O—H⋯Cl hydrogen bonds and their ER value is 1.73. The H⋯H contacts are the second largest contributor, but they display an enrichment ratio significantly below unity (ERHH = 0.47). The formation of extensive π–π inter­actions is reflected in the relatively high ERCC of 3.94.

Synthesis and crystallization

The title compound was prepared by dropwise addition of an ethano­lic solution of 1H-benzotriazole (0.061 g, 0.5 mmol) to 1 mmol of a bis­muth nitrate solution [Bi(NO3)3·5H2O], dissolved in 0.05 mL of a concentrated HCl aqueous solution. The resulting aqueous solution was stirred for 30 min. and kept at room temperature for crystallization. After two week of slow evaporation, colourless single crystals of (I) (yield = 75%) were formed in the solution. Analysis observed (calculated) for [C6H6N3]2[BiCl5]·2H2O (%): C 21.6 (21.0), H 2.66 (2.41), N 34.6 (33.8).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. The N-bound and C-bound hydrogen atoms were positioned geometrically and treated as riding: N—H = 0.86 Å and C—H = 0.93 Å with U iso(H) = 1.2U eq(N,C). The O—H and H⋯H separations in the water mol­ecule were restrained using a DFIX model to be 0.90 and 1.46 Å, respectively, and refined with U(H) = 1.5U eq(O).
Table 3

Experimental details

Crystal data
Chemical formula(C6H6N3)2[BiCl5]·2H2O
M r 662.54
Crystal system, space groupOrthorhombic, C m c21
Temperature (K)293
a, b, c (Å)19.4627 (4), 13.8181 (4), 7.7343 (2)
V3)2080.04 (9)
Z 4
Radiation typeMo Kα
μ (mm−1)9.14
Crystal size (mm)0.55 × 0.34 × 0.23
 
Data collection
DiffractometerNonius KappaCCD
Absorption correctionMulti-scan (SORTAV; Blessing, 1995)
T min, T max 0.011, 0.053
No. of measured, independent and observed [I > 2σ(I)] reflections6050, 1670, 1643
R int 0.067
(sin θ/λ)max−1)0.581
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.038, 0.096, 1.11
No. of reflections1670
No. of parameters131
No. of restraints4
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)1.68, −0.76
Absolute structureFlack (1983), 731 Friedel pairs
Absolute structure parameter−0.036 (14)

Computer programs: Kappa CCD server software (Nonius, 1997 ▸), DENZO-SMN (Otwinowski & Minor, 1997 ▸), SHELXS97, SHELXL97 and SHELXTL (Sheldrick, 2008 ▸), ORTEPIII (Burnett & Johnson, 1996 ▸), and WinGX (Farrugia, 2012 ▸).

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989017015134/hb7714sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017015134/hb7714Isup2.hkl CCDC reference: 1580458 Additional supporting information: crystallographic information; 3D view; checkCIF report
(C6H6N3)2[BiCl5]·2H2OF(000) = 1256
Mr = 662.54Dx = 2.116 Mg m3
Orthorhombic, Cmc21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2c -2Cell parameters from 8027 reflections
a = 19.4627 (4) Åθ = 4.4–7.3°
b = 13.8181 (4) ŵ = 9.14 mm1
c = 7.7343 (2) ÅT = 293 K
V = 2080.04 (9) Å3Rod, colourless
Z = 40.55 × 0.34 × 0.23 mm
Nonius KappaCCD diffractometer1670 independent reflections
Radiation source: fine-focus sealed tube1643 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.067
f scans and w scansθmax = 24.4°, θmin = 4.4°
Absorption correction: multi-scan (SORTAV; Blessing, 1995)h = −22→22
Tmin = 0.011, Tmax = 0.053k = −16→16
6050 measured reflectionsl = −8→8
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.038w = 1/[σ2(Fo2) + (0.0704P)2 + 2.8002P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.096(Δ/σ)max = 0.038
S = 1.11Δρmax = 1.68 e Å3
1670 reflectionsΔρmin = −0.76 e Å3
131 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
4 restraintsExtinction coefficient: 0.0028 (4)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 731 Friedel pairs
Secondary atom site location: difference Fourier mapAbsolute structure parameter: −0.036 (14)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Bi10.50000.35812 (2)0.08277 (6)0.0310 (2)
Cl10.36329 (14)0.3716 (2)0.0695 (12)0.0685 (10)
Cl20.50000.2105 (2)−0.1139 (6)0.0458 (7)
Cl30.50000.2501 (3)0.3697 (5)0.0500 (8)
Cl40.50000.5302 (3)0.2874 (5)0.0652 (10)
O1W0.6246 (4)0.3531 (5)0.585 (3)0.0570 (18)
C10.6621 (5)0.0963 (7)0.7492 (14)0.042 (2)
C20.6058 (5)0.0522 (8)0.6684 (15)0.049 (2)
H2C0.57040.08730.61750.058*
C30.6071 (6)−0.0470 (8)0.6707 (16)0.054 (3)
H30.5705−0.08040.62150.065*
C40.6607 (6)−0.1001 (8)0.7433 (16)0.056 (2)
H40.6590−0.16730.73900.067*
C50.7154 (7)−0.0568 (8)0.8201 (15)0.047 (3)
H50.7511−0.09260.86840.057*
C60.7153 (6)0.0439 (9)0.8229 (14)0.040 (2)
N30.7585 (5)0.1125 (8)0.8909 (15)0.050 (2)
H3A0.79540.09920.94690.060*
N10.6790 (5)0.1908 (7)0.7770 (15)0.058 (2)
H10.65450.23900.74340.070*
N20.7371 (5)0.1995 (8)0.8609 (16)0.061 (3)
H110.600 (5)0.400 (8)0.638 (18)0.091*
H220.595 (5)0.320 (10)0.520 (18)0.091*
U11U22U33U12U13U23
Bi10.0321 (3)0.0286 (3)0.0323 (3)0.0000.000−0.0007 (2)
Cl10.0362 (11)0.0924 (19)0.077 (3)0.0003 (11)0.008 (2)−0.013 (2)
Cl20.0575 (19)0.0308 (16)0.0490 (17)0.0000.000−0.0089 (14)
Cl30.0605 (19)0.0469 (19)0.0427 (16)0.0000.0000.0107 (16)
Cl40.088 (3)0.053 (2)0.054 (2)0.0000.000−0.0215 (16)
O1W0.042 (3)0.060 (5)0.069 (5)0.002 (2)0.002 (10)−0.010 (5)
C10.041 (5)0.033 (5)0.051 (5)0.001 (4)0.009 (4)−0.002 (4)
C20.047 (5)0.050 (6)0.049 (5)0.008 (4)0.001 (4)−0.002 (4)
C30.048 (5)0.056 (7)0.059 (6)−0.008 (5)−0.001 (5)−0.011 (5)
C40.064 (6)0.042 (6)0.062 (6)−0.004 (5)0.016 (5)−0.005 (5)
C50.053 (7)0.042 (6)0.047 (6)0.011 (5)0.002 (5)0.001 (5)
C60.032 (5)0.046 (5)0.040 (5)0.004 (4)0.002 (4)−0.007 (5)
N30.044 (5)0.053 (6)0.053 (6)−0.002 (5)0.005 (4)−0.006 (4)
N10.052 (5)0.037 (5)0.085 (7)−0.001 (4)0.011 (5)−0.005 (5)
N20.053 (6)0.050 (6)0.080 (7)−0.016 (5)0.010 (5)−0.018 (5)
Bi1—Cl12.669 (3)C2—H2C0.9300
Bi1—Cl1i2.669 (3)C3—C41.394 (17)
Bi1—Cl22.545 (3)C3—H30.9300
Bi1—Cl32.674 (4)C4—C51.358 (18)
Bi1—Cl4ii2.757 (4)C4—H40.9300
Bi1—Cl42.856 (4)C5—C61.392 (13)
Cl4—Bi1iii2.757 (4)C5—H50.9300
O1W—H110.90 (2)C6—N31.370 (15)
O1W—H220.90 (2)N3—N21.293 (15)
C1—N11.364 (16)N3—H3A0.8600
C1—C61.387 (16)N1—N21.308 (15)
C1—C21.402 (15)N1—H10.8600
C2—C31.371 (16)
Cl2—Bi1—Cl191.88 (13)C3—C2—H2C122.8
Cl2—Bi1—Cl1i91.88 (13)C1—C2—H2C122.8
Cl1—Bi1—Cl1i170.9 (2)C2—C3—C4123.0 (10)
Cl2—Bi1—Cl392.80 (16)C2—C3—H3118.5
Cl1—Bi1—Cl394.06 (17)C4—C3—H3118.5
Cl1i—Bi1—Cl394.06 (17)C5—C4—C3122.1 (10)
Cl2—Bi1—Cl4ii87.32 (14)C5—C4—H4118.9
Cl1—Bi1—Cl4ii85.93 (17)C3—C4—H4118.9
Cl1i—Bi1—Cl4ii85.93 (17)C4—C5—C6116.5 (12)
Cl3—Bi1—Cl4ii179.88 (13)C4—C5—H5121.8
Cl2—Bi1—Cl4176.93 (13)C6—C5—H5121.8
Cl1—Bi1—Cl487.90 (13)N3—C6—C1104.7 (10)
Cl1i—Bi1—Cl487.90 (13)N3—C6—C5134.1 (13)
Cl3—Bi1—Cl490.27 (13)C1—C6—C5121.1 (13)
Cl4ii—Bi1—Cl489.61 (3)N2—N3—C6112.1 (10)
Bi1iii—Cl4—Bi1157.68 (19)N2—N3—H3A123.9
H11—O1W—H22106 (3)C6—N3—H3A123.9
N1—C1—C6104.8 (10)N2—N1—C1112.0 (10)
N1—C1—C2132.5 (10)N2—N1—H1124.0
C6—C1—C2122.7 (10)C1—N1—H1124.0
C3—C2—C1114.5 (10)N3—N2—N1106.4 (9)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1W0.862.082.891 (17)157
N3—H3A···O1Wiv0.862.00 (2)2.767 (18)148
O1W—H11···Cl4iii0.89 (11)2.47 (11)3.306 (13)157 (9)
O1W—H22···Cl30.90 (12)2.38 (12)3.268 (14)169 (11)
C5—H5···Cl1v0.932.733.603 (14)157
  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Crystal structure, vibrational spectra and non-linear optical properties of diethylenetriammonium hexabromobismuthate: C4H16N3BiBr6.

Authors:  Hajer Dammak; Habib Feki; Habib Boughzala; Younes Abid
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2014-10-08       Impact factor: 4.098

4.  Poly[bis-(1-carbamoylguanidinium) [tri-μ-chlorido-dichloridobismuthate(III)]].

Authors:  Hel Ferjani; Habib Boughzala; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-18

5.  Benzotriazolium picrate.

Authors:  Bo Zeng; Ji Li; Guo-Dong Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

6.  1H-Benzotriazole-4-hy-droxy-benzoic acid (1/1).

Authors:  A Thirunavukkarasu; A Silambarasan; G Chakkaravarthi; R Mohankumar; P R Umarani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-02

7.  Bis(1,2,3-benzotriazolium) sulfate dihydrate.

Authors:  Randolph K Belter; Frank R Fronczek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-28

8.  The enrichment ratio of atomic contacts in crystals, an indicator derived from the Hirshfeld surface analysis.

Authors:  Christian Jelsch; Krzysztof Ejsmont; Loïc Huder
Journal:  IUCrJ       Date:  2014-02-28       Impact factor: 4.769

  8 in total

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