| Literature DB >> 29152366 |
Doaa M Masoud1, Sherif F Hammad2, Galal H Elgemeie1, Peter G Jones3.
Abstract
In the title compound, C14H18N2O5S, the C-S bond lengths are unequal, with S-Cglucose = 1.8016 (15) Å and S-Cpyrid-yl = 1.7723 (13) Å. The hydro-philic glucose residues lie in the regions z ≃ 0.25 and 0.75. Four classical hydrogen bonds link the mol-ecules to form layers parallel to the ab plane, from which the pyridyl rings project; pyridyl ring stacking parallel to the a axis links adjacent layers.Entities:
Keywords: crystal structure; pyridine; thioglucose
Year: 2017 PMID: 29152366 PMCID: PMC5683506 DOI: 10.1107/S2056989017015213
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The structure of the title compound in the crystal. Displacement ellipsoids represent 50% probability levels.
Selected geometric parameters (Å, °)
| S1—C12 | 1.7723 (13) | S1—C1 | 1.8016 (15) |
| C12—S1—C1 | 100.43 (6) | ||
| C12—S1—C1—C2 | 152.98 (9) | C1—S1—C12—N11 | −2.08 (14) |
Figure 2Packing diagram of the title compound, viewed perpendicular to the ab plane. Classical hydrogen bonds are indicated by dashed lines. Methyl and nitrile substituents of the pyridine rings have been omitted for clarity.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H02⋯O3i | 0.80 (2) | 2.01 (2) | 2.7909 (16) | 165 (3) |
| O3—H03⋯O5ii | 0.81 (2) | 1.93 (2) | 2.7394 (14) | 174 (2) |
| O4—H04⋯O1iii | 0.80 (2) | 2.06 (2) | 2.7490 (15) | 144 (2) |
| O5—H05⋯O4iv | 0.79 (2) | 1.96 (2) | 2.7324 (18) | 165 (3) |
| C2—H2⋯O5iv | 1.00 | 2.47 | 3.3326 (19) | 144 |
| C5—H5⋯N12v | 1.00 | 2.64 | 3.638 (2) | 179 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Experimental details
| Crystal data | |
| Chemical formula | C14H18N2O5S |
|
| 326.36 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 7.66978 (18), 8.72860 (13), 23.7524 (4) |
| β (°) | 98.7356 (16) |
|
| 1571.69 (5) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.23 |
| Crystal size (mm) | 0.40 × 0.35 × 0.20 |
| Data collection | |
| Diffractometer | Oxford Diffraction Xcalibur Eos |
| Absorption correction | Multi-scan ( |
|
| 0.980, 1.000 |
| No. of measured, independent and observed [ | 84844, 4741, 4590 |
|
| 0.027 |
| (sin θ/λ)max (Å−1) | 0.729 |
| Refinement | |
|
| 0.024, 0.063, 1.05 |
| No. of reflections | 4741 |
| No. of parameters | 217 |
| No. of restraints | 7 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.30, −0.17 |
| Absolute structure | Flack |
| Absolute structure parameter | −0.008 (8) |
Computer programs: CrysAlis PRO (Rigaku Oxford Diffraction, 2015 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2017 (Sheldrick, 2015 ▸) and XP (Siemens, 1994 ▸).
| C14H18N2O5S | |
| Monoclinic, | Mo |
| Cell parameters from 46975 reflections | |
| θ = 2.7–30.9° | |
| µ = 0.23 mm−1 | |
| β = 98.7356 (16)° | |
| Block, colourless | |
| 0.40 × 0.35 × 0.20 mm |
| Oxford Diffraction Xcalibur Eos diffractometer | 4741 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 4590 reflections with |
| Detector resolution: 16.1419 pixels mm-1 | |
| ω–scan | θmax = 31.2°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 84844 measured reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.30 e Å−3 | |
| 4741 reflections | Δρmin = −0.17 e Å−3 |
| 217 parameters | Absolute structure: Flack |
| 7 restraints | Absolute structure parameter: −0.008 (8) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 0.59062 (4) | 0.54939 (4) | 0.37504 (2) | 0.01953 (8) | |
| C1 | 0.57772 (17) | 0.35296 (17) | 0.35150 (5) | 0.0175 (2) | |
| H1 | 0.557606 | 0.284848 | 0.383749 | 0.021* | |
| O1 | 0.74310 (12) | 0.31545 (12) | 0.33376 (4) | 0.0183 (2) | |
| C2 | 0.42750 (17) | 0.33167 (17) | 0.30152 (5) | 0.0177 (3) | |
| H2 | 0.444291 | 0.404110 | 0.270164 | 0.021* | |
| O2 | 0.26172 (13) | 0.35885 (13) | 0.31878 (4) | 0.0200 (2) | |
| H02 | 0.223 (4) | 0.438 (3) | 0.3050 (12) | 0.054 (8)* | |
| C3 | 0.42986 (17) | 0.16706 (17) | 0.27975 (5) | 0.0184 (2) | |
| H3 | 0.399828 | 0.095244 | 0.309645 | 0.022* | |
| O3 | 0.30583 (13) | 0.14881 (14) | 0.22910 (4) | 0.0226 (2) | |
| H03 | 0.207 (3) | 0.161 (3) | 0.2365 (9) | 0.033 (6)* | |
| C4 | 0.61090 (18) | 0.12809 (18) | 0.26570 (6) | 0.0185 (3) | |
| H4 | 0.636616 | 0.194695 | 0.233704 | 0.022* | |
| O4 | 0.61422 (15) | −0.02842 (14) | 0.24885 (5) | 0.0250 (2) | |
| H04 | 0.672 (3) | −0.035 (3) | 0.2237 (9) | 0.039 (6)* | |
| C5 | 0.74991 (17) | 0.15622 (18) | 0.31794 (5) | 0.0186 (2) | |
| H5 | 0.722628 | 0.091101 | 0.350129 | 0.022* | |
| C6 | 0.93568 (18) | 0.12113 (19) | 0.30688 (5) | 0.0210 (3) | |
| H6A | 1.021081 | 0.174340 | 0.335809 | 0.025* | |
| H6B | 0.957132 | 0.009636 | 0.311368 | 0.025* | |
| O5 | 0.96641 (13) | 0.16663 (14) | 0.25148 (4) | 0.0208 (2) | |
| H05 | 0.957 (3) | 0.256 (2) | 0.2480 (11) | 0.043 (7)* | |
| N11 | 0.71744 (19) | 0.38506 (16) | 0.46739 (5) | 0.0247 (3) | |
| C12 | 0.68518 (18) | 0.52490 (16) | 0.44732 (5) | 0.0193 (3) | |
| C13 | 0.7223 (2) | 0.65733 (19) | 0.48057 (6) | 0.0219 (3) | |
| C14 | 0.8011 (2) | 0.64238 (19) | 0.53789 (6) | 0.0235 (3) | |
| C15 | 0.8355 (2) | 0.4955 (2) | 0.55786 (6) | 0.0274 (3) | |
| H15 | 0.889755 | 0.479840 | 0.596114 | 0.033* | |
| C16 | 0.7915 (2) | 0.3696 (2) | 0.52236 (6) | 0.0290 (3) | |
| C17 | 0.6799 (3) | 0.8053 (2) | 0.45591 (7) | 0.0313 (4) | |
| N12 | 0.6448 (3) | 0.9219 (2) | 0.43492 (7) | 0.0491 (5) | |
| C18 | 0.8435 (3) | 0.7795 (2) | 0.57556 (7) | 0.0357 (4) | |
| H18A | 0.876528 | 0.745852 | 0.615104 | 0.054* | |
| H18B | 0.739865 | 0.846339 | 0.572717 | 0.054* | |
| H18C | 0.941903 | 0.835962 | 0.563468 | 0.054* | |
| C19 | 0.8230 (4) | 0.2094 (2) | 0.54374 (8) | 0.0472 (5) | |
| H19A | 0.779315 | 0.137031 | 0.513317 | 0.071* | |
| H19B | 0.760624 | 0.192842 | 0.576301 | 0.071* | |
| H19C | 0.949717 | 0.193415 | 0.555621 | 0.071* |
| S1 | 0.01731 (15) | 0.02917 (15) | 0.01144 (12) | −0.00026 (13) | 0.00001 (10) | 0.00067 (12) |
| C1 | 0.0108 (6) | 0.0311 (7) | 0.0110 (5) | −0.0011 (5) | 0.0029 (4) | −0.0017 (5) |
| O1 | 0.0094 (4) | 0.0321 (5) | 0.0138 (4) | −0.0017 (4) | 0.0028 (3) | −0.0016 (4) |
| C2 | 0.0091 (6) | 0.0334 (7) | 0.0107 (5) | −0.0015 (5) | 0.0023 (4) | −0.0006 (5) |
| O2 | 0.0097 (4) | 0.0329 (5) | 0.0181 (4) | 0.0011 (4) | 0.0045 (3) | 0.0002 (4) |
| C3 | 0.0094 (6) | 0.0328 (7) | 0.0132 (5) | −0.0023 (5) | 0.0029 (4) | −0.0023 (5) |
| O3 | 0.0084 (4) | 0.0429 (6) | 0.0162 (4) | −0.0026 (4) | 0.0014 (3) | −0.0066 (4) |
| C4 | 0.0093 (6) | 0.0329 (7) | 0.0136 (5) | −0.0026 (5) | 0.0029 (4) | −0.0033 (5) |
| O4 | 0.0159 (5) | 0.0371 (6) | 0.0239 (5) | −0.0036 (4) | 0.0095 (4) | −0.0100 (5) |
| C5 | 0.0114 (6) | 0.0322 (6) | 0.0123 (5) | −0.0006 (5) | 0.0025 (4) | −0.0015 (5) |
| C6 | 0.0104 (6) | 0.0404 (8) | 0.0124 (5) | 0.0011 (5) | 0.0018 (4) | −0.0012 (5) |
| O5 | 0.0113 (4) | 0.0378 (6) | 0.0138 (4) | −0.0013 (4) | 0.0040 (3) | −0.0025 (4) |
| N11 | 0.0303 (7) | 0.0304 (6) | 0.0123 (5) | −0.0068 (5) | −0.0003 (5) | 0.0028 (5) |
| C12 | 0.0153 (6) | 0.0318 (8) | 0.0107 (5) | −0.0027 (5) | 0.0022 (4) | 0.0005 (5) |
| C13 | 0.0213 (7) | 0.0316 (7) | 0.0131 (6) | −0.0011 (6) | 0.0039 (5) | −0.0001 (5) |
| C14 | 0.0249 (7) | 0.0330 (8) | 0.0127 (6) | −0.0042 (6) | 0.0030 (5) | −0.0021 (5) |
| C15 | 0.0331 (8) | 0.0353 (7) | 0.0124 (6) | −0.0069 (6) | −0.0010 (5) | 0.0010 (5) |
| C16 | 0.0397 (9) | 0.0319 (8) | 0.0139 (6) | −0.0065 (7) | −0.0009 (6) | 0.0042 (6) |
| C17 | 0.0441 (10) | 0.0340 (8) | 0.0151 (6) | 0.0055 (7) | 0.0029 (6) | −0.0042 (6) |
| N12 | 0.0849 (15) | 0.0372 (9) | 0.0232 (7) | 0.0143 (9) | 0.0022 (8) | −0.0021 (6) |
| C18 | 0.0511 (11) | 0.0371 (9) | 0.0175 (7) | −0.0039 (8) | 0.0005 (7) | −0.0059 (6) |
| C19 | 0.0847 (17) | 0.0335 (9) | 0.0182 (7) | −0.0065 (10) | −0.0093 (8) | 0.0069 (7) |
| S1—C12 | 1.7723 (13) | C6—H6A | 0.9900 |
| S1—C1 | 1.8016 (15) | C6—H6B | 0.9900 |
| C1—O1 | 1.4338 (16) | O5—H05 | 0.79 (2) |
| C1—C2 | 1.5348 (17) | N11—C12 | 1.3201 (19) |
| C1—H1 | 1.0000 | N11—C16 | 1.3492 (19) |
| O1—C5 | 1.4428 (18) | C12—C13 | 1.405 (2) |
| C2—O2 | 1.4141 (16) | C13—C14 | 1.4092 (19) |
| C2—C3 | 1.528 (2) | C13—C17 | 1.435 (2) |
| C2—H2 | 1.0000 | C14—C15 | 1.379 (2) |
| O2—H02 | 0.80 (2) | C14—C18 | 1.500 (2) |
| C3—O3 | 1.4247 (16) | C15—C16 | 1.394 (2) |
| C3—C4 | 1.5152 (18) | C15—H15 | 0.9500 |
| C3—H3 | 1.0000 | C16—C19 | 1.495 (2) |
| O3—H03 | 0.809 (19) | C17—N12 | 1.147 (2) |
| C4—O4 | 1.4249 (18) | C18—H18A | 0.9800 |
| C4—C5 | 1.5280 (18) | C18—H18B | 0.9800 |
| C4—H4 | 1.0000 | C18—H18C | 0.9800 |
| O4—H04 | 0.800 (19) | C19—H19A | 0.9800 |
| C5—C6 | 1.5187 (18) | C19—H19B | 0.9800 |
| C5—H5 | 1.0000 | C19—H19C | 0.9800 |
| C6—O5 | 1.4279 (16) | ||
| C12—S1—C1 | 100.43 (6) | O5—C6—H6A | 108.9 |
| O1—C1—C2 | 109.80 (10) | C5—C6—H6A | 108.9 |
| O1—C1—S1 | 107.40 (9) | O5—C6—H6B | 108.9 |
| C2—C1—S1 | 110.77 (10) | C5—C6—H6B | 108.9 |
| O1—C1—H1 | 109.6 | H6A—C6—H6B | 107.8 |
| C2—C1—H1 | 109.6 | C6—O5—H05 | 110.3 (19) |
| S1—C1—H1 | 109.6 | C12—N11—C16 | 118.04 (14) |
| C1—O1—C5 | 111.41 (10) | N11—C12—C13 | 123.16 (13) |
| O2—C2—C3 | 108.25 (11) | N11—C12—S1 | 119.22 (10) |
| O2—C2—C1 | 110.96 (10) | C13—C12—S1 | 117.62 (11) |
| C3—C2—C1 | 109.24 (11) | C12—C13—C14 | 119.18 (14) |
| O2—C2—H2 | 109.5 | C12—C13—C17 | 119.82 (13) |
| C3—C2—H2 | 109.5 | C14—C13—C17 | 121.00 (15) |
| C1—C2—H2 | 109.5 | C15—C14—C13 | 116.75 (14) |
| C2—O2—H02 | 109 (2) | C15—C14—C18 | 121.60 (13) |
| O3—C3—C4 | 107.80 (10) | C13—C14—C18 | 121.64 (15) |
| O3—C3—C2 | 110.49 (11) | C14—C15—C16 | 120.56 (14) |
| C4—C3—C2 | 110.12 (11) | C14—C15—H15 | 119.7 |
| O3—C3—H3 | 109.5 | C16—C15—H15 | 119.7 |
| C4—C3—H3 | 109.5 | N11—C16—C15 | 122.29 (15) |
| C2—C3—H3 | 109.5 | N11—C16—C19 | 116.40 (15) |
| C3—O3—H03 | 109.1 (16) | C15—C16—C19 | 121.31 (14) |
| O4—C4—C3 | 109.46 (12) | N12—C17—C13 | 178.31 (17) |
| O4—C4—C5 | 110.01 (12) | C14—C18—H18A | 109.5 |
| C3—C4—C5 | 109.57 (11) | C14—C18—H18B | 109.5 |
| O4—C4—H4 | 109.3 | H18A—C18—H18B | 109.5 |
| C3—C4—H4 | 109.3 | C14—C18—H18C | 109.5 |
| C5—C4—H4 | 109.3 | H18A—C18—H18C | 109.5 |
| C4—O4—H04 | 108.6 (19) | H18B—C18—H18C | 109.5 |
| O1—C5—C6 | 108.14 (11) | C16—C19—H19A | 109.5 |
| O1—C5—C4 | 108.53 (11) | C16—C19—H19B | 109.5 |
| C6—C5—C4 | 112.61 (11) | H19A—C19—H19B | 109.5 |
| O1—C5—H5 | 109.2 | C16—C19—H19C | 109.5 |
| C6—C5—H5 | 109.2 | H19A—C19—H19C | 109.5 |
| C4—C5—H5 | 109.2 | H19B—C19—H19C | 109.5 |
| O5—C6—C5 | 113.19 (11) | ||
| C12—S1—C1—O1 | −87.12 (9) | C3—C4—C5—C6 | −179.39 (13) |
| C12—S1—C1—C2 | 152.98 (9) | O1—C5—C6—O5 | −81.24 (14) |
| C2—C1—O1—C5 | −63.63 (14) | C4—C5—C6—O5 | 38.67 (18) |
| S1—C1—O1—C5 | 175.85 (8) | C16—N11—C12—C13 | −0.8 (2) |
| O1—C1—C2—O2 | 176.40 (11) | C16—N11—C12—S1 | 179.18 (12) |
| S1—C1—C2—O2 | −65.14 (13) | C1—S1—C12—N11 | −2.08 (14) |
| O1—C1—C2—C3 | 57.13 (14) | C1—S1—C12—C13 | 177.90 (11) |
| S1—C1—C2—C3 | 175.59 (8) | N11—C12—C13—C14 | 1.4 (2) |
| O2—C2—C3—O3 | 66.09 (13) | S1—C12—C13—C14 | −178.62 (11) |
| C1—C2—C3—O3 | −172.97 (10) | N11—C12—C13—C17 | −178.71 (16) |
| O2—C2—C3—C4 | −174.93 (11) | S1—C12—C13—C17 | 1.31 (19) |
| C1—C2—C3—C4 | −54.00 (14) | C12—C13—C14—C15 | −0.6 (2) |
| O3—C3—C4—O4 | −62.97 (14) | C17—C13—C14—C15 | 179.51 (16) |
| C2—C3—C4—O4 | 176.42 (10) | C12—C13—C14—C18 | −179.89 (15) |
| O3—C3—C4—C5 | 176.33 (12) | C17—C13—C14—C18 | 0.2 (2) |
| C2—C3—C4—C5 | 55.72 (15) | C13—C14—C15—C16 | −0.7 (3) |
| C1—O1—C5—C6 | −173.06 (10) | C18—C14—C15—C16 | 178.65 (17) |
| C1—O1—C5—C4 | 64.49 (13) | C12—N11—C16—C15 | −0.5 (3) |
| O4—C4—C5—O1 | 179.92 (10) | C12—N11—C16—C19 | 178.95 (18) |
| C3—C4—C5—O1 | −59.70 (14) | C14—C15—C16—N11 | 1.3 (3) |
| O4—C4—C5—C6 | 60.23 (16) | C14—C15—C16—C19 | −178.17 (19) |
| H··· | ||||
| O2—H02···O3i | 0.80 (2) | 2.01 (2) | 2.7909 (16) | 165 (3) |
| O3—H03···O5ii | 0.81 (2) | 1.93 (2) | 2.7394 (14) | 174 (2) |
| O4—H04···O1iii | 0.80 (2) | 2.06 (2) | 2.7490 (15) | 144 (2) |
| O5—H05···O4iv | 0.79 (2) | 1.96 (2) | 2.7324 (18) | 165 (3) |
| C2—H2···O5iv | 1.00 | 2.47 | 3.3326 (19) | 144 |
| C5—H5···N12v | 1.00 | 2.64 | 3.638 (2) | 179 |