Literature DB >> 29148815

Information-Theoretic Approaches to Atoms-in-Molecules: Hirshfeld Family of Partitioning Schemes.

Farnaz Heidar-Zadeh1,2,3, Paul W Ayers1, Toon Verstraelen2, Ivan Vinogradov1, Esteban Vöhringer-Martinez4, Patrick Bultinck3.   

Abstract

Many population analysis methods are based on the precept that molecules should be built from fragments (typically atoms) that maximally resemble the isolated fragment. The resulting molecular building blocks are intuitive (because they maximally resemble well-understood systems) and transferable (because if two molecular fragments both resemble an isolated fragment, they necessarily resemble each other). Information theory is one way to measure the deviation between molecular fragments and their isolated counterparts, and it is a way that lends itself to interpretation. For example, one can analyze the relative importance of electron transfer and polarization of the fragments. We present key features, advantages, and disadvantages of the information-theoretic approach. We also codify existing information-theoretic partitioning methods in a way that clarifies the enormous freedom one has within the information-theoretic ansatz.

Year:  2018        PMID: 29148815     DOI: 10.1021/acs.jpca.7b08966

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  15 in total

1.  Role of electronic kinetic energy and resultant gradient information in chemical reactivity.

Authors:  Roman F Nalewajski
Journal:  J Mol Model       Date:  2019-08-16       Impact factor: 1.810

2.  Local electrophilicity.

Authors:  Andrés Robles; Marco Franco-Pérez; José L Gázquez; Carlos Cárdenas; Patricio Fuentealba
Journal:  J Mol Model       Date:  2018-08-20       Impact factor: 1.810

3.  Local and nonlocal counterparts of global descriptors: the cases of chemical softness and hardness.

Authors:  Marco Franco-Pérez; Carlos A Polanco-Ramírez; José L Gázquez; Paul W Ayers
Journal:  J Mol Model       Date:  2018-09-20       Impact factor: 1.810

4.  Hydration Free Energies in the FreeSolv Database Calculated with Polarized Iterative Hirshfeld Charges.

Authors:  Maximiliano Riquelme; Alejandro Lara; David L Mobley; Toon Verstraelen; Adelio R Matamala; Esteban Vöhringer-Martinez
Journal:  J Chem Inf Model       Date:  2018-08-31       Impact factor: 4.956

5.  SAMPL6 Octanol-water partition coefficients from alchemical free energy calculations with MBIS atomic charges.

Authors:  Maximiliano Riquelme; Esteban Vöhringer-Martinez
Journal:  J Comput Aided Mol Des       Date:  2020-01-20       Impact factor: 3.686

6.  Information equilibria, subsystem entanglement, and dynamics of the overall entropic descriptors of molecular electronic structure.

Authors:  Roman F Nalewajski
Journal:  J Mol Model       Date:  2018-07-19       Impact factor: 1.810

7.  The Atomic Partial Charges Arboretum: Trying to See the Forest for the Trees.

Authors:  Minsik Cho; Nitai Sylvetsky; Sarah Eshafi; Golokesh Santra; Irena Efremenko; Jan M L Martin
Journal:  Chemphyschem       Date:  2020-03-23       Impact factor: 3.102

8.  A QM/MM Derived Polarizable Water Model for Molecular Simulation.

Authors:  Koen M Visscher; William C Swope; Daan P Geerke
Journal:  Molecules       Date:  2018-11-29       Impact factor: 4.411

9.  Deriving a Polarizable Force Field for Biomolecular Building Blocks with Minimal Empirical Calibration.

Authors:  Koen M Visscher; Daan P Geerke
Journal:  J Phys Chem B       Date:  2020-02-19       Impact factor: 2.991

10.  Understand the Specific Regio- and Enantioselectivity of Fluostatin Conjugation in the Post-Biosynthesis.

Authors:  Yuanqi Wang; Changsheng Zhang; Yi-Lei Zhao; Rosalinda Zhao; Kendall N Houk
Journal:  Biomolecules       Date:  2020-05-26
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.