Literature DB >> 29147851

Bijective codon transformations show genetic code symmetries centered on cytosine's coding properties.

Hervé Seligmann1,2.   

Abstract

Homology of some RNAs with template DNA requires systematic exchanges between nucleotides. Such exchanges produce 'swinger' RNA along 23 bijective transformations (nine symmetric, X ↔ Y; and 14 asymmetric, X → Y → Z → X, for example A ↔ C and A → C → G → A, respectively). Here, analyses compare amino acids coded by swinger-transformed codons to those coded by untransformed codons, defining coding invariance after transformations. Swinger transformations cluster according to coding invariance in four groups characterized by transformations into cytosine (C = C, T → C, A → C, and G → C). C's central mutational coding role shows that swinger transformations constrained genetic code genesis. Coding invariance post-transformations correlate positively/negatively with mitochondrial swinger transcription/lepidosaurian body temperature. Presumably, low/high temperatures stabilize/revert rare swinger polymerization modes, producing long swinger sequences/point mutations, respectively. Coding invariance after swinger transformations might compensate effects of swinger polymerizations in species with low body temperatures. Hypothetically, swinger transcription increased coding potential of RNA self-replicating protolife systems under heating/cooling cycles.

Entities:  

Keywords:  Abyssal hydrothermal vent; Circular codes; Rumer’s transformation

Mesh:

Substances:

Year:  2017        PMID: 29147851     DOI: 10.1007/s12064-017-0258-x

Source DB:  PubMed          Journal:  Theory Biosci        ISSN: 1431-7613            Impact factor:   1.919


  133 in total

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Review 5.  Genetic coding and united-hypercomplex systems in the models of algebraic biology.

Authors:  Sergey V Petoukhov
Journal:  Biosystems       Date:  2017-05-20       Impact factor: 1.973

6.  Circular code motifs in the ribosome decoding center.

Authors:  Karim El Soufi; Christian J Michel
Journal:  Comput Biol Chem       Date:  2014-08-05       Impact factor: 2.877

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Journal:  Nature       Date:  1966-06-18       Impact factor: 49.962

9.  The Rodin-Ohno hypothesis that two enzyme superfamilies descended from one ancestral gene: an unlikely scenario for the origins of translation that will not be dismissed.

Authors:  Charles W Carter; Li Li; Violetta Weinreb; Martha Collier; Katiria Gonzalez-Rivera; Mariel Jimenez-Rodriguez; Ozgün Erdogan; Brian Kuhlman; Xavier Ambroggio; Tishan Williams; S Niranj Chandrasekharan
Journal:  Biol Direct       Date:  2014-06-14       Impact factor: 4.540

10.  Chimeric mitochondrial peptides from contiguous regular and swinger RNA.

Authors:  Hervé Seligmann
Journal:  Comput Struct Biotechnol J       Date:  2016-06-29       Impact factor: 7.271

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  2 in total

1.  Chimeric Translation for Mitochondrial Peptides: Regular and Expanded Codons.

Authors:  Hervé Seligmann; Ganesh Warthi
Journal:  Comput Struct Biotechnol J       Date:  2019-08-23       Impact factor: 7.271

2.  Protein Sequences Recapitulate Genetic Code Evolution.

Authors:  Hervé Seligmann
Journal:  Comput Struct Biotechnol J       Date:  2018-05-30       Impact factor: 7.271

  2 in total

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