Literature DB >> 29146813

Structural basis of bacterial transcription activation.

Bin Liu1, Chuan Hong2, Rick K Huang2, Zhiheng Yu3, Thomas A Steitz4,5,6.   

Abstract

In bacteria, the activation of gene transcription at many promoters is simple and only involves a single activator. The cyclic adenosine 3',5'-monophosphate receptor protein (CAP), a classic activator, is able to activate transcription independently through two different mechanisms. Understanding the class I mechanism requires an intact transcription activation complex (TAC) structure at a high resolution. Here we report a high-resolution cryo-electron microscopy structure of an intact Escherichia coli class I TAC containing a CAP dimer, a σ70-RNA polymerase (RNAP) holoenzyme, a complete class I CAP-dependent promoter DNA, and a de novo synthesized RNA oligonucleotide. The structure shows how CAP wraps the upstream DNA and how the interactions recruit RNAP. Our study provides a structural basis for understanding how activators activate transcription through the class I recruitment mechanism.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 29146813     DOI: 10.1126/science.aao1923

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  25 in total

1.  Structural basis of bacterial σ28 -mediated transcription reveals roles of the RNA polymerase zinc-binding domain.

Authors:  Wei Shi; Wei Zhou; Baoyue Zhang; Shaojia Huang; Yanan Jiang; Abigail Schammel; Yangbo Hu; Bin Liu
Journal:  EMBO J       Date:  2020-06-02       Impact factor: 11.598

2.  Structural basis of σ appropriation.

Authors:  Jing Shi; Aijia Wen; Minxing Zhao; Linlin You; Yu Zhang; Yu Feng
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

3.  Structural basis of transcription activation by the global regulator Spx.

Authors:  Jing Shi; Fangfang Li; Aijia Wen; Libing Yu; Lu Wang; Fulin Wang; Yuanling Jin; Sha Jin; Yu Feng; Wei Lin
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

Review 4.  Diverse and unified mechanisms of transcription initiation in bacteria.

Authors:  James Chen; Hande Boyaci; Elizabeth A Campbell
Journal:  Nat Rev Microbiol       Date:  2020-10-29       Impact factor: 60.633

5.  Differential modulation of energy landscapes of cyclic AMP receptor protein (CRP) as a regulatory mechanism for class II CRP-dependent promoters.

Authors:  Wilfredo Evangelista; Aichun Dong; Mark A White; Jianquan Li; J Ching Lee
Journal:  J Biol Chem       Date:  2019-09-06       Impact factor: 5.157

6.  Cryo-EM structure of Escherichia coli σ70 RNA polymerase and promoter DNA complex revealed a role of σ non-conserved region during the open complex formation.

Authors:  Anoop Narayanan; Frank S Vago; Kunpeng Li; M Zuhaib Qayyum; Dinesh Yernool; Wen Jiang; Katsuhiko S Murakami
Journal:  J Biol Chem       Date:  2018-03-26       Impact factor: 5.157

7.  Structural Energy Landscapes and Plasticity of the Microstates of Apo Escherichia coli cAMP Receptor Protein.

Authors:  Rati Chkheidze; Wilfredo Evangelista; Mark A White; Y Whitney Yin; J Ching Lee
Journal:  Biochemistry       Date:  2020-01-10       Impact factor: 3.162

8.  Fluorescence-Detected Conformational Changes in Duplex DNA in Open Complex Formation by Escherichia coli RNA Polymerase: Upstream Wrapping and Downstream Bending Precede Clamp Opening and Insertion of the Downstream Duplex.

Authors:  Raashi Sreenivasan; Irina A Shkel; Munish Chhabra; Amanda Drennan; Sara Heitkamp; Hao-Che Wang; Malavika A Sridevi; Dylan Plaskon; Christina McNerney; Katelyn Callies; Clare K Cimperman; M Thomas Record
Journal:  Biochemistry       Date:  2020-04-07       Impact factor: 3.162

Review 9.  An Introduction to the Structure and Function of the Catalytic Core Enzyme of Escherichia coli RNA Polymerase.

Authors:  Catherine Sutherland; Katsuhiko S Murakami
Journal:  EcoSal Plus       Date:  2018-08

10.  Activation by TyrR in Escherichia coli K-12 by Interaction between TyrR and the α-Subunit of RNA Polymerase.

Authors:  Helen Camakaris; Ji Yang; Tadashi Fujii; James Pittard
Journal:  J Bacteriol       Date:  2021-09-08       Impact factor: 3.490

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