| Literature DB >> 29145455 |
Shimin Zong1, Xue Zeng2, Tianyi Liu1, Fangmin Wan1, Pan Luo1, Hongjun Xiao1.
Abstract
BACKGROUND: Several case-control studies reported the relationship between single nucleotide polymorphisms (SNPs) in HSP70 genes and noise-induced hearing loss (NIHL). However, their conclusions are conflicting. This meta-analysis aims to identify the association of HSP70 variants and NIHL susceptibility.Entities:
Mesh:
Substances:
Year: 2017 PMID: 29145455 PMCID: PMC5689837 DOI: 10.1371/journal.pone.0188195
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristics of the five SNPs in HSP70 genes.
| SNP | Location (gene) | Location (chromosome) | Synonymous or not | Variation in protein level |
|---|---|---|---|---|
| rs1043618 | the 5’ UTR of | 6p21.3 | - | NA |
| rs2763979 | 936 bp upstream of the 5’ end of the | 6p21.3 | - | NA |
| rs2227956 | 6p21.3 | a nonsynonymous variation | changes methionine to threonine resulting in the 3D structure alteration | |
| rs2075800 | 6p21.3 | a nonsynonymous variation | changes glutamic acid to lysine resulting in the 3D structure alteration | |
| rs1061581 | 6p21.3 | a synonymous variation | - |
UTR: untranslated region; NA: not available;
* be considered belonging to the HSPA1B.
Fig 1Flow diagram of study selection process.
Characteristics of included studies.
| First author (year) | Country | Ethnicity | Workplace | Sample size (M/F) | Age | Genotype method | NOS score | ||
|---|---|---|---|---|---|---|---|---|---|
| Case | Control | Case | Control | ||||||
| Li (2017) | China (mainland) | Asian (Chinese) | Steel factory | 286(274/12) | 286(274/12) | 45.5 ± 8.1 | 39.8 ± 8.1 | PCR(SNP scan™) | 7 |
| Chang (2011) | China (Taiwan) | Asian (Chinese) | Factories not clearly showed | 27(27/10) | 322(309/13) | 45.15 ± 6.74 | 44.05 ± 7.82 | Real time—PCR | 8 |
| Konings (2009) | Sweden | Caucasian (Swedish) | 2 paper pulp mills and 1 steel factory | 108(NA) | 98(NA) | NA | NA | PCR(SNaPshot™) | 6 |
| Konings (2009) | Poland | Caucasian (Polish) | Different factories | 119(NA) | 119(NA) | NA | NA | PCR(SNaPshot™) | 7 |
| Yang (2009) | China (mainland) | Asian (Chinese) | Motor factory | 93(77/16) | 101(55/46) | 35.2 ± 6.9 | 33.0 ± 6.1 | PCR | 7 |
M/F: male/female. NOS: Newcastle-Ottawa Scale. PCR: polymerase chain reaction. NA: not available. TM: trademark.
Genotype distribution of HSP70 SNPs.
| SNP | First author (year) | Case | Control | HWE | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | AB | BB | Total | AA | AB | BB | Total | X2 | P | ||
| Li (2017) | 124 | 117 | 45 | 286 | 130 | 125 | 31 | 286 | 0.01352 | 0.907435 | |
| (G> C) | Chang (2011) | 8 | 18 | 1 | 27 | 153 | 139 | 30 | 322 | 0.037921 | 0.845602 |
| Konings (2009, Swedish) | 31 | 51 | 11 | 93 | 49 | 44 | 7 | 100 | 0.468949 | 0.493471 | |
| Konings (2009, Polish) | 44 | 58 | 14 | 116 | 46 | 58 | 12 | 116 | 0.009615 | 0.92189 | |
| Yang (2009) | 37 | 43 | 13 | 93 | 35 | 48 | 18 | 101 | 0.047963 | 0.826647 | |
| Li (2017) | 128 | 128 | 30 | 286 | 112 | 132 | 42 | 286 | 0.093721 | 0.759499 | |
| (C > T) | Chang (2011) | 10 | 15 | 2 | 27 | 113 | 166 | 43 | 322 | 2.175678 | 0.140208 |
| Li (2017) | 204 | 64 | 8 | 276 | 201 | 73 | 2 | 276 | 2.856668 | 0.090996 | |
| (A > G) | Konings (2009, Swedish) | 64 | 27 | 0 | 91 | 54 | 39 | 5 | 98 | 0.367347 | 0.544454 |
| Konings (2009, Polish) | 95 | 22 | 1 | 118 | 81 | 32 | 4 | 117 | 0.143747 | 0.704584 | |
| Yang (2009) | 58 | 34 | 1 | 93 | 67 | 32 | 2 | 101 | 0.673503 | 0.411833 | |
| Li (2017) | 104 | 133 | 49 | 286 | 116 | 139 | 31 | 286 | 1.253581 | 0.26287 | |
| (C > T) | Chang (2011) | 18 | 9 | 0 | 27 | 179 | 124 | 19 | 322 | 0.165829 | 0.683846 |
| Konings (2009, Swedish) | 24 | 55 | 13 | 92 | 44 | 45 | 11 | 100 | 0.009975 | 0.920442 | |
| (A > G) | Konings (2009, Polish) | 37 | 61 | 18 | 116 | 43 | 56 | 15 | 114 | 0.236309 | 0.626885 |
| Yang (2009) | 43 | 41 | 9 | 93 | 50 | 48 | 3 | 101 | 4.591447 | ||
HWE: Hardy-Weinberg equilibrium.
# P < 0.05, showing statistically significant difference.
Fig 2The association between rs1061581 and NIHL susceptibility in different genetic models.
Overall analysis of the association between HSP70 SNPs and NIHL susceptibility.
| SNP | Ethnicity | Study number | Case/Control | Genetic model | I2 (%) | Model | OR (95% CI) | Z score | P (Z) |
|---|---|---|---|---|---|---|---|---|---|
| 5 | 615/925 | G vs. C | 19.7 | F | 1.150 (0.978, 1.351) | 1.70 | 0.090 | ||
| (G > C) | GG vs. CC | 10.6 | F | 1.301 (0.909, 1.863) | 1.44 | 0.151 | |||
| GG vs. GC | 44.0 | F | 1.151 (0.912, 1.454) | 1.18 | 0.236 | ||||
| GG vs. GC+CC | 39.5 | F | 1.188 (0.952, 1.484) | 1.53 | 0.127 | ||||
| GG+GC vs. CC | 5.1 | F | 1.228 (0.879, 1.716) | 1.21 | 0.228 | ||||
| 3 | 406/709 | G vs. C | 18.2 | F | 1.092 (0.897, 1.330) | 0.88 | 0.381 | ||
| GG vs. CC | 29.4 | F | 1.086 (0.594, 1.987) | 0.27 | 0.789 | ||||
| GG vs. GC | 54.5 | R | 1.144 (0.695, 1.885) | 0.53 | 0.597 | ||||
| GG vs. GC+CC | 42.6 | F | 1.099 (0.839, 1.440) | 0.68 | 0.494 | ||||
| GG+GC vs. CC | 45.4 | F | 1.165 (0.784, 1.729) | 0.76 | 0.450 | ||||
| 2 | 209/216 | G vs. C | 42.9 | F | 1.278 (0.964, 1.694) | 1.70 | 0.088 | ||
| GG vs. CC | 4.0 | F | 1.673 (0.824, 3.253) | 1.41 | 0.159 | ||||
| GG vs. GC | 44.7 | F | 1.349 (0.900, 2.023) | 1.45 | 0.147 | ||||
| GG vs. GC+CC | 52.2 | R | 1.418 (0.803, 2.503) | 1.20 | 0.228 | ||||
| GG+GC vs. CC | 0.0 | F | 1.403 (0.784, 2.633) | 1.06 | 0.291 | ||||
| 4 | 525/828 | G vs. C | 0.0 | F | 1.089(0.914, 1.297) | 0.96 | 0.339 | ||
| GG vs. CC | 0.0 | F | 1.191(0.812, 1.748) | 0.89 | 0.371 | ||||
| GG vs. GC | 31.8 | F | 1.060(0.823, 1.366) | 0.45 | 0.653 | ||||
| GG vs. GC+CC | 14.0 | F | 1.094(0.860, 1.391) | 0.73 | 0.464 | ||||
| GG+GC vs. CC | 18.0 | F | 1.169(0.819, 1.669) | 0.86 | 0.389 | ||||
| 4 | 578/592 | A vs. G | 63.7 | R | 0.780 (0.528, 1.847) | 1.25 | 0.213 | ||
| (A>G) | AA vs. GG | 62.4 | R | 0.549 (0.090, 3.348) | 0.65 | 0.516 | |||
| AA vs. AG | 27.1 | F | 0.802 (0.619, 1.040) | 1.67 | 0.096 | ||||
| AA vs. AG + GG | 50.7 | R | 0.772 (0.529, 1.127) | 1.34 | 0.180 | ||||
| AA + AG vs. GG | 60.3 | R | 0.593 (0.013, 3.425) | 0.58 | 0.550 | ||||
| 2 | 369/377 | A vs. G | 0.0 | F | 1.064 (0.802, 1.410) | 0.43 | 0.668 | ||
| AA vs. GG | 41.3 | F | 2.328 (0.071, 7.727) | 1.38 | 0.168 | ||||
| AA vs. AG | 0.0 | F | 0.959 (0.693, 1.327) | 0.25 | 0.800 | ||||
| AA vs. AG + GG | 0.0 | F | 1.011 (0.734, 1.389) | 0.07 | 0.945 | ||||
| AA + AG vs. GG | 47.7 | F | 2.335 (0.711, 7.671) | 1.40 | 0.162 | ||||
| 2 | 209/215 | 0.0 | F | 3.26 | |||||
| 0.0 | F | 2.26 | |||||||
| 0.0 | F | 2.42 | |||||||
| 0.0 | F | 2.92 | |||||||
| 0.0 | F | 2.09 | |||||||
| 3 | 470/494 | A vs. G | 55.9 | R | 0.886(0.595, 1.319) | 0.59 | 0.552 | ||
| AA vs. GG | 59.4 | R | 0.915(0.144, 5.827) | 0.09 | 0.925 | ||||
| AA vs. AG | 29.5 | F | 0.861(0.646, 1.147) | 1.02 | 0.307 | ||||
| AA vs. AG + GG | 44.3 | F | 0.882(0.667, 1.166) | 0.88 | 0.377 | ||||
| AA + AG vs. GG | 58.5 | R | 0.950(0.153, 5.901) | 0.06 | 0.956 | ||||
| 3 | 301/315 | 0.0 | F | 2.34 | |||||
| (A>G) | 0.0 | F | 2.31 | ||||||
| AA vs. AG | 43.7 | F | 1.378 (0.981,1.937) | 1.85 | 0.065 | ||||
| 27.7 | F | 2.24 | |||||||
| AA + AG vs. GG | 0.0 | F | 1.500 (0.901, 2.496) | 1.56 | 0.119 | ||||
| 2 | 251/264 | 0.0 | F | 2.08 | |||||
| (HWE P > 0.05 | AA vs. GG | 0.0 | F | 1.679 (0.907, 3.109) | 1.65 | 0.099 | |||
| subgroup) | 41.9 | F | 2.29 | ||||||
| 41.0 | F | 2.42 | |||||||
| AA + AG vs. GG | 0.0 | F | 1.262 (0.720, 2.210) | 0.81 | 0.416 | ||||
| 2 | 107/217 | A vs. G | 0.0 | F | 1.222(0.920, 1.624) | 1.38 | 0.167 | ||
| AA vs. GG | 21.7 | F | 1.814(0.912, 3.606) | 1.70 | 0.090 | ||||
| AA vs. AG | 0.0 | F | 1.124(0.748, 1.689) | 0.56 | 0.572 | ||||
| AA vs. AG + GG | 0.0 | F | 1.217(0.823, 1.800) | 0.98 | 0.326 | ||||
| AA + AG vs. GG | 46.0 | F | 1.599(0.848, 3.014) | 1.45 | 0.147 | ||||
| 2 | 313/608 | C vs. T | 0.0 | F | 0.182 (0.684, 1.017) | 1.82 | 0.069 | ||
| (C>T) | CC vs. TT | 0.0 | F | 0.612 (0.370, 1.013) | 1.91 | 0.056 | |||
| CC vs. CT | 0.0 | F | 0.872 (0.631, 1.206) | 0.83 | 0.408 | ||||
| CC vs. CT + TT | 0.0 | F | 0.811 (0.596, 1.103) | 1.33 | 0.182 | ||||
| CC + CT vs. TT | 0.0 | F | 0.658 (0.410, 1.055) | 1.74 | 0.082 | ||||
| 2 | 313/608 | C vs. T | 71.7 | R | 0.939 (0.462, 1.909) | 0.17 | 0.862 | ||
| (C>T) | CC vs. TT | 44.6 | F | 1.561 (0.850, 2.564) | 1.76 | 0.079 | |||
| CC vs. CT | 0.0 | F | 1.003 (0.724, 1.389) | 0.02 | 0.988 | ||||
| CC vs. CT + TT | 50.0 | R | 0.971 (0.537, 1.753) | 0.10 | 0.921 | ||||
| CC + CT vs. TT | 34.4 | F | 1.550 (0.975, 2.464) | 1.85 | 0.064 |
F: fixed-effects model. R: random-effects model. P< 0.05, showing statistically significant difference.