| Literature DB >> 29137427 |
Xiangyi Kong1,2, Hao Deng2, Theodore Alston2, Yanguo Kong1, Jingping Wang2.
Abstract
BACKGROUND AND OBJECT: Whether opioid-receptor mu 1 (OPRM1) A118G polymorphism (rs1799971) is associated with nicotine dependence is controversial. We analyzed the combined results from published studies of this possibility.Entities:
Keywords: OPRM1-A118G; meta-analysis; nicotine dependence; polymorphism; rs1799971
Year: 2017 PMID: 29137427 PMCID: PMC5663599 DOI: 10.18632/oncotarget.20939
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Figure 1Literature search and selection of articles
Inclusion criteria for study selection in this meta-analysis
| Number | Inclusion criteria |
|---|---|
| 1 | Case-control studies. |
| 2 | The studies evaluated the associations between OPRM1 A118G polymorphism and nicotine dependence. |
| 3 | The studies included detailed genotyping data (total number of cases and controls, number of cases and controls with A/A, A/G, and G/G genotypes). |
| 4 | Studies focusing on human being. |
| 1 | The design of the experiments was not case-control. |
| 2 | The source of cases and controls, and other essential information were not provided. |
| 3 | The genotype distribution of the control population was not in accordance with the Hardy–Weinberg equilibrium (HWE). |
| 4 | Reviews and duplicated publications. |
Scale for methodological quality assessment
| Criteria | Score |
|---|---|
| RA diagnosed according to acknowledged criteria. | 2 |
| Mentioned the diagnosed criteria but not specifically described. | 1 |
| Not Mentioned. | 0 |
| Population or community based | 3 |
| Hospital-based RA-free controls | 2 |
| Healthy volunteers without total description | 1 |
| RA-free controls with related diseases | 0.5 |
| Not described | 0 |
| >300 | 2 |
| 200-300 | 1 |
| <200 | 0 |
| Repetition of partial/total tested samples with a different method | 2 |
| Repetition of partial/total tested samples with the same method | 1 |
| Not described | 0 |
| Hardy-Weinberg equilibrium in control subjects | 1 |
| Hardy-Weinberg disequilibrium in control subjects | 0 |
Statistical methods used in this meta-analysis and their explanations
| Statistic means | Goals and usages | Explanation |
|---|---|---|
| Labbe plot | To evaluate heterogeneity between the included studies | In Labbe figure, if the points basically present as a linear distribution, it can be taken as an evidence of homogeneity. |
| Cochran's Q test | To evaluate heterogeneity between the included studies | Cochran's Q test is an extension to the McNemar test for related samples that provides a method for testing for differences between three or more matched sets of frequencies or proportions. Heterogeneity was also considered significant if P < 0.05 using the Cochran's Q test. |
| I2 index test | To evaluate heterogeneity between the included studies | The I2 index measures the extent of true heterogeneity dividing the difference between the result of the Q test and its degrees of freedom (k – 1) by the Q value itself, and multiplied by 100. I2 values of 25%, 50% and 75% were used as evidence of low, moderate and high heterogeneity, respectively. |
| Sensitivity analysis | To examine the stability of the pooled results | A sensitivity analysis was performed using the one-at-a-time method, which involved omitting one study at a time and repeating the meta-analysis. If the omission of one study significantly changed the result, it implied that the result was sensitive to the studies included. |
| Funnel plot | Publication bias test | In the absence of publication bias, it assumes that studies with high precision will be plotted near the average, and studies with low precision will be spread evenly on both sides of the average, creating a roughly funnel-shaped distribution. Deviation from this shape can indicate publication bias. |
Characteristics of studies included in the meta-analysis
| Author | Year | Country | Ethnicity | Disease type | Genotyping | Source of controls | Nicotine-dependence (n) | Controls (n) | P for HWE | Quality | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | AA | AG | GG | Total | AA | AG | GG | |||||||||
| Schinka | 2002 | USA | Caucasian | Nicotine -dependence | PCR-RFLP | Population-based | 134 | 114 | 20 | 0 | 297 | 220 | 73 | 4 | 0.0000 | 8 |
| Zhang | 2006 | China | Asian | Nicotine -dependence | Taqman | NA | 443 | 343 | 90 | 10 | 238 | 187 | 46 | 5 | 0.313 | 8 |
| Chen | 2013 | Taiwan, China | Asian | Nicotine -dependence | PCR-RFLP | NA | 366 | 151 | 170 | 45 | 387 | 180 | 159 | 48 | 0.1678 | 6 |
| Fang | 2014 | China | Asian | Nicotine -dependence | iPLEX/MALDI-TOF mass spectrometry | Population-based | 137 | 64 | 62 | 11 | 146 | 72 | 58 | 16 | 0.4116 | 7 |
| Hasvik | 2014 | Norway | Caucasian | Nicotine -dependence | Taqman | Population-based | 43 | 34 | 9 | 0 | 75 | 61 | 13 | 1 | 0.7484 | 6 |
| Frances | 2015 | Spain | Caucasian | Nicotine -dependence | Taqman | Population-based | 175 | 118 | 54 | 3 | 588 | 408 | 166 | 14 | 0.549 | 8 |
| Hirasawa | 2015 | USA | Caucasian | Nicotine -dependence | Taqman | Hospital-based | 196 | 157 | 29 | 10 | 88 | 63 | 25 | 0 | 0.1204 | 7 |
Results of meta-analysis for various genotype models
| Genetic model | Heterogeneity test | Test of Association | Egger's test | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Name | Explanation | Ethnicity | Q value | d.f. | I-squared | Tau-squared | P Value | Heterogeneity | Effect model | Pooled OR | 95% CI | Z value | P value | Statistical significance | P Value | 95% CI | Publication bias |
| Allele model | G vs. A | Caucasian | 5.70 | 3 | 47.3% | NA | 0.127 | No | Fixed | 0.876 | [0.719, 1.067] | 1.32 | 0.187 | No | - | - | - |
| Asian | 0.31 | 2 | 0.0% | NA | 0.857 | No | Fixed | 1.056 | [0.943, 1.183] | 0.94 | 0.346 | No | - | - | - | ||
| Total | 8.02 | 6 | 25.2% | NA | 0.236 | No | Fixed | 1.000 | [0.906, 1.104] | 0.00 | 0.999 | No | 0.174 | [-4.45, 1.05] | No | ||
| Homozygote model | GG vs. AA | Caucasian | 3.54 | 3 | 15.3% | NA | 0.315 | No | Fixed | 1.062 | [0.439, 2.566] | 0.13 | 0.895 | No | - | - | - |
| Asian | 0.57 | 2 | 0.0% | NA | 0.751 | No | Fixed | 1.027 | [0.756, 1.395] | 0.17 | 0.867 | No | - | - | - | ||
| Total | 4.07 | 6 | 0.0% | NA | 0.667 | No | Fixed | 1.032 | [0.771, 1.381] | 0.21 | 0.834 | No | 0.768 | [-1.69, 1.32] | No | ||
| Heterozygote model | AG vs. AA | Caucasian | 9.92 | 3 | 69.8% | 0.1140 | 0.019 | Yes | Random | 0.797 | [0.530, 1.197] | 1.10 | 0.273 | No | - | - | - |
| Asian | 0.16 | 2 | 0.0% | 0.0000 | 0.923 | No | Fixed | 1.112 | [0.984, 1.256] | 1.70 | 0.089 | No | - | - | - | ||
| Total | 14.66 | 6 | 59.1% | 0.0332 | 0.023 | Yes | Random | 0.963 | [0.799, 1.162] | 0.39 | 0.696 | No | 0.228 | [-7.24, 2.20] | No | ||
| Dominant model | AG+GG vs. AA | Caucasian | 7.30 | 3 | 58.9% | NA | 0.063 | No | Fixed | 0.862 | [0.715, 1.039] | 1.55 | 0.120 | No | - | - | - |
| Asian | 0.15 | 2 | 0.0% | NA | 0.928 | No | Fixed | 1.080 | [0.971, 1.200] | 1.42 | 0.157 | No | - | - | - | ||
| Total | 11.02 | 6 | 45.5% | NA | 0.088 | No | Fixed | 1.006 | [0.916, 1.104] | 0.12 | 0.907 | No | 0.195 | [-6.22, 1.65] | No | ||
| Recessive model | GG vs. AA+AG | Caucasian | 3.92 | 3 | 23.5% | NA | 0.270 | No | Fixed | 1.133 | [0.473, 2.711] | 0.28 | 0.779 | No | - | - | - |
| Asian | 0.58 | 2 | 0.0% | NA | 0.748 | No | Fixed | 0.941 | [0.682, 1.297] | 0.37 | 0.710 | No | - | - | - | ||
| Total | 4.29 | 6 | 0.0% | NA | 0.638 | No | Fixed | 0.967 | [0.715, 1.309] | 0.21 | 0.830 | No | 0.984 | [-1.53, 1.51] | No | ||
Figure 2Labbe plots, sensitivity analysis plots and contour-enhanced funnel plots of the included studies focusing on the association between OPRM1-A118G Polymorphism and nicotine-dependence risk
Labbe plots in allele model (A), heterozygote model (B), and dominant model (C). Sensitivity analysis in allele model (D), heterozygote model (E), and dominant model (F). Funnel plots in allele model (G), heterozygote model (H), and dominant model (I).
Figure 3Forest plots (individual and pooled effects with 95% CI) regarding the association between OPRM1-A118G polymorphism and nicotine-dependence in allele model (A), homozygote model (B), heterozygote model (C), dominant model (D) and recessive model (E).