Literature DB >> 19268276

Genome-wide association study of smoking initiation and current smoking.

Jacqueline M Vink1, August B Smit, Eco J C de Geus, Patrick Sullivan, Gonneke Willemsen, Jouke-Jan Hottenga, Johannes H Smit, Witte J Hoogendijk, Frans G Zitman, Leena Peltonen, Jaakko Kaprio, Nancy L Pedersen, Patrik K Magnusson, Tim D Spector, Kirsten Ohm Kyvik, Katherine I Morley, Andrew C Heath, Nicholas G Martin, Rudi G J Westendorp, P Eline Slagboom, Henning Tiemeier, Albert Hofman, Andre G Uitterlinden, Yurii S Aulchenko, Najaf Amin, Cornelia van Duijn, Brenda W Penninx, Dorret I Boomsma.   

Abstract

For the identification of genes associated with smoking initiation and current smoking, genome-wide association analyses were carried out in 3497 subjects. Significant genes that replicated in three independent samples (n = 405, 5810, and 1648) were visualized into a biologically meaningful network showing cellular location and direct interaction of their proteins. Several interesting groups of proteins stood out, including glutamate receptors (e.g., GRIN2B, GRIN2A, GRIK2, GRM8), proteins involved in tyrosine kinase receptor signaling (e.g., NTRK2, GRB14), transporters (e.g., SLC1A2, SLC9A9) and cell-adhesion molecules (e.g., CDH23). We conclude that a network-based genome-wide association approach can identify genes influencing smoking behavior.

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Year:  2009        PMID: 19268276      PMCID: PMC2667987          DOI: 10.1016/j.ajhg.2009.02.001

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  54 in total

1.  Significant association of BDNF haplotypes in European-American male smokers but not in European-American female or African-American smokers.

Authors:  Joke Beuten; Jennie Z Ma; Thomas J Payne; Randolph T Dupont; Paulina Quezada; Weihua Huang; Karen M Crews; Ming D Li
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2005-11-05       Impact factor: 3.568

2.  Pooled association genome scanning: validation and use to identify addiction vulnerability loci in two samples.

Authors:  Qing-Rong Liu; Tomas Drgon; Donna Walther; Catherine Johnson; Oxanna Poleskaya; Judith Hess; George R Uhl
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-09       Impact factor: 11.205

3.  Evaluating coverage of genome-wide association studies.

Authors:  Jeffrey C Barrett; Lon R Cardon
Journal:  Nat Genet       Date:  2006-05-21       Impact factor: 38.330

4.  Addiction molecular genetics: 639,401 SNP whole genome association identifies many "cell adhesion" genes.

Authors:  Qing-Rong Liu; Tomas Drgon; Catherine Johnson; Donna Walther; Judith Hess; George R Uhl
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2006-12-05       Impact factor: 3.568

5.  Evidence of genetic enrichment for exceptional survival using a family approach: the Leiden Longevity Study.

Authors:  Manja Schoenmaker; Anton J M de Craen; Paul H E M de Meijer; Marian Beekman; Gerard J Blauw; P Eline Slagboom; Rudi G J Westendorp
Journal:  Eur J Hum Genet       Date:  2006-01       Impact factor: 4.246

6.  Association of OPRM1 A118G variant with the relative reinforcing value of nicotine.

Authors:  R Ray; C Jepson; F Patterson; A Strasser; M Rukstalis; K Perkins; K G Lynch; S O'Malley; W H Berrettini; C Lerman
Journal:  Psychopharmacology (Berl)       Date:  2006-09-08       Impact factor: 4.530

7.  Association of specific haplotypes of neurotrophic tyrosine kinase receptor 2 gene (NTRK2) with vulnerability to nicotine dependence in African-Americans and European-Americans.

Authors:  Joke Beuten; Jennie Z Ma; Thomas J Payne; Randolph T Dupont; Xiang-Yang Lou; Karen M Crews; Robert C Elston; Ming D Li
Journal:  Biol Psychiatry       Date:  2006-05-19       Impact factor: 13.382

8.  Genetic architecture of smoking behavior: a study of Finnish adult twins.

Authors:  Ulla Broms; Karri Silventoinen; Pamela A F Madden; Andrew C Heath; Jaakko Kaprio
Journal:  Twin Res Hum Genet       Date:  2006-02       Impact factor: 1.587

9.  Candidate-gene screening and association analysis at the autism-susceptibility locus on chromosome 16p: evidence of association at GRIN2A and ABAT.

Authors:  Gabrielle Barnby; Aaron Abbott; Nuala Sykes; Andrew Morris; Daniel E Weeks; Richard Mott; Janine Lamb; Anthony J Bailey; Anthony P Monaco
Journal:  Am J Hum Genet       Date:  2005-04-13       Impact factor: 11.025

10.  Genome-wide association for major depressive disorder: a possible role for the presynaptic protein piccolo.

Authors:  P F Sullivan; E J C de Geus; G Willemsen; M R James; J H Smit; T Zandbelt; V Arolt; B T Baune; D Blackwood; S Cichon; W L Coventry; K Domschke; A Farmer; M Fava; S D Gordon; Q He; A C Heath; P Heutink; F Holsboer; W J Hoogendijk; J J Hottenga; Y Hu; M Kohli; D Lin; S Lucae; D J Macintyre; W Maier; K A McGhee; P McGuffin; G W Montgomery; W J Muir; W A Nolen; M M Nöthen; R H Perlis; K Pirlo; D Posthuma; M Rietschel; P Rizzu; A Schosser; A B Smit; J W Smoller; J-Y Tzeng; R van Dyck; M Verhage; F G Zitman; N G Martin; N R Wray; D I Boomsma; B W J H Penninx
Journal:  Mol Psychiatry       Date:  2008-12-09       Impact factor: 15.992

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  78 in total

1.  Pharmacogenetics of smoking cessation: role of nicotine target and metabolism genes.

Authors:  Allison B Gold; Caryn Lerman
Journal:  Hum Genet       Date:  2012-01-31       Impact factor: 4.132

2.  Association of genetic copy number variations at 11 q14.2 with brain regional volume differences in an alcohol use disorder population.

Authors:  David Boutte; Vince D Calhoun; Jiayu Chen; Amithrupa Sabbineni; Kent Hutchison; Jingyu Liu
Journal:  Alcohol       Date:  2012-06-23       Impact factor: 2.405

3.  Identification of CHRNA5 rare variants in African-American heavy smokers.

Authors:  Glenn A Doyle; Andrew D Chou; Wint Thu Saung; Alison T Lai; Falk W Lohoff; Wade H Berrettini
Journal:  Psychiatr Genet       Date:  2014-06       Impact factor: 2.458

4.  Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.

Authors:  Dankyu Yoon; Young-Jin Kim; Wen-Yan Cui; Andrew Van der Vaart; Yoon Shin Cho; Jong-Young Lee; Jennie Z Ma; Thomas J Payne; Ming D Li; Taesung Park
Journal:  Hum Genet       Date:  2011-10-18       Impact factor: 4.132

5.  Sequence variants in three loci influence monocyte counts and erythrocyte volume.

Authors:  Manuel A R Ferreira; Jouke-Jan Hottenga; Nicole M Warrington; Sarah E Medland; Gonneke Willemsen; Robert W Lawrence; Scott Gordon; Eco J C de Geus; Anjali K Henders; Johannes H Smit; Megan J Campbell; Leanne Wallace; David M Evans; Margaret J Wright; Dale R Nyholt; Alan L James; John P Beilby; Brenda W Penninx; Lyle J Palmer; Ian H Frazer; Grant W Montgomery; Nicholas G Martin; Dorret I Boomsma
Journal:  Am J Hum Genet       Date:  2009-10-22       Impact factor: 11.025

6.  Association of a variant in the CHRNA5-A3-B4 gene cluster region to heavy smoking in the Italian population.

Authors:  Rossella Sorice; Silvia Bione; Serena Sansanelli; Sheila Ulivi; Emmanouil Athanasakis; Carmela Lanzara; Teresa Nutile; Cinzia Sala; Clara Camaschella; Pio D'Adamo; Paolo Gasparini; Marina Ciullo; Daniela Toniolo
Journal:  Eur J Hum Genet       Date:  2011-01-19       Impact factor: 4.246

7.  Association of the calcyon neuron-specific vesicular protein gene (CALY) with adolescent smoking initiation in China and California.

Authors:  Dalin Li; Stephanie J London; Jinghua Liu; Wonho Lee; Xuejuan Jiang; David Van Den Berg; Andrew W Bergen; Denise Nishita; Nahid Waleh; Gary E Swan; Peggy Gallaher; Chih-Ping Chou; Jean C Shih; Jennifer B Unger; W James Gauderman; Frank Gilliland; C Anderson Johnson; David V Conti
Journal:  Am J Epidemiol       Date:  2011-03-16       Impact factor: 4.897

8.  Significant association of glutamate receptor, ionotropic N-methyl-D-aspartate 3A (GRIN3A), with nicotine dependence in European- and African-American smokers.

Authors:  Jennie Z Ma; Thomas J Payne; Justin Nussbaum; Ming D Li
Journal:  Hum Genet       Date:  2010-01-19       Impact factor: 4.132

9.  Diurnal Evening Type is Associated with Current Smoking, Nicotine Dependence and Nicotine Intake in the Population Based National FINRISK 2007 Study.

Authors:  Ulla Broms; Marjaana Pennanen; Kristiina Patja; Hanna Ollila; Tellervo Korhonen; Aino Kankaanpää; Ari Haukkala; Annamari Tuulio-Henriksson; Markku Koskenvuo; Erkki Kronholm; Tiina Laatikainen; Markku Peltonen; Timo Partonen; Jaakko Kaprio
Journal:  J Addict Res Ther       Date:  2012-01-25

10.  ProbABEL package for genome-wide association analysis of imputed data.

Authors:  Yurii S Aulchenko; Maksim V Struchalin; Cornelia M van Duijn
Journal:  BMC Bioinformatics       Date:  2010-03-16       Impact factor: 3.169

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