Literature DB >> 29131159

Enhancing the precision of genetic lineage tracing using dual recombinases.

Lingjuan He1,2, Yan Li1,2, Yi Li1,2, Wenjuan Pu1,2, Xiuzhen Huang1,2, Xueying Tian1,2, Yue Wang1,2, Hui Zhang1,2, Qiaozhen Liu1,2, Libo Zhang1,2, Huan Zhao1,2, Juan Tang1,2, Hongbin Ji1,3, Dongqing Cai4, Zhibo Han5, Zhongchao Han5, Yu Nie6, Shengshou Hu6, Qing-Dong Wang7, Ruilin Sun8, Jian Fei8, Fengchao Wang9, Ting Chen9, Yan Yan10, Hefeng Huang11, William T Pu12, Bin Zhou1,2,3,4,13.   

Abstract

The Cre-loxP recombination system is the most widely used technology for in vivo tracing of stem or progenitor cell lineages. The precision of this genetic system largely depends on the specificity of Cre recombinase expression in targeted stem or progenitor cells. However, Cre expression in nontargeted cell types can complicate the interpretation of lineage-tracing studies and has caused controversy in many previous studies. Here we describe a new genetic lineage tracing system that incorporates the Dre-rox recombination system to enhance the precision of conventional Cre-loxP-mediated lineage tracing. The Dre-rox system permits rigorous control of Cre-loxP recombination in lineage tracing, effectively circumventing potential uncertainty of the cell-type specificity of Cre expression. Using this new system we investigated two topics of recent debates-the contribution of c-Kit+ cardiac stem cells to cardiomyocytes in the heart and the contribution of Sox9+ hepatic progenitor cells to hepatocytes in the liver. By overcoming the technical hurdle of nonspecific Cre-loxP-mediated recombination, this new technology provides more precise analysis of cell lineage and fate decisions and facilitates the in vivo study of stem and progenitor cell plasticity in disease and regeneration.

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Year:  2017        PMID: 29131159     DOI: 10.1038/nm.4437

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   53.440


  50 in total

Review 1.  Cre recombinase: the universal reagent for genome tailoring.

Authors:  A Nagy
Journal:  Genesis       Date:  2000-02       Impact factor: 2.487

2.  Fusion of bone-marrow-derived cells with Purkinje neurons, cardiomyocytes and hepatocytes.

Authors:  Manuel Alvarez-Dolado; Ricardo Pardal; Jose M Garcia-Verdugo; John R Fike; Hyun O Lee; Klaus Pfeffer; Carlos Lois; Sean J Morrison; Arturo Alvarez-Buylla
Journal:  Nature       Date:  2003-10-12       Impact factor: 49.962

3.  DNA recombination with a heterospecific Cre homolog identified from comparison of the pac-c1 regions of P1-related phages.

Authors:  Brian Sauer; Jeffrey McDermott
Journal:  Nucleic Acids Res       Date:  2004-11-18       Impact factor: 16.971

4.  Adult c-kit(pos) cardiac stem cells are necessary and sufficient for functional cardiac regeneration and repair.

Authors:  Georgina M Ellison; Carla Vicinanza; Andrew J Smith; Iolanda Aquila; Angelo Leone; Cheryl D Waring; Beverley J Henning; Giuliano Giuseppe Stirparo; Roberto Papait; Marzia Scarfò; Valter Agosti; Giuseppe Viglietto; Gianluigi Condorelli; Ciro Indolfi; Sergio Ottolenghi; Daniele Torella; Bernardo Nadal-Ginard
Journal:  Cell       Date:  2013-08-15       Impact factor: 41.582

5.  Genetic lineage tracing identifies endocardial origin of liver vasculature.

Authors:  Hui Zhang; Wenjuan Pu; Xueying Tian; Xiuzhen Huang; Lingjuan He; Qiaozhen Liu; Yan Li; Libo Zhang; Liang He; Kuo Liu; Astrid Gillich; Bin Zhou
Journal:  Nat Genet       Date:  2016-03-28       Impact factor: 38.330

6.  Islet1 derivatives in the heart are of both neural crest and second heart field origin.

Authors:  Kurt A Engleka; Lauren J Manderfield; Rachael D Brust; Li Li; Ashley Cohen; Susan M Dymecki; Jonathan A Epstein
Journal:  Circ Res       Date:  2012-03-06       Impact factor: 17.367

7.  Adult mouse epicardium modulates myocardial injury by secreting paracrine factors.

Authors:  Bin Zhou; Leah B Honor; Huamei He; Qing Ma; Jin-Hee Oh; Catherine Butterfield; Ruei-Zeng Lin; Juan M Melero-Martin; Elena Dolmatova; Heather S Duffy; Alexander von Gise; Pingzhu Zhou; Yong Wu Hu; Gang Wang; Bing Zhang; Lianchun Wang; Jennifer L Hall; Marsha A Moses; Francis X McGowan; William T Pu
Journal:  J Clin Invest       Date:  2011-04-18       Impact factor: 14.808

8.  Clonal tracing of Sox9+ liver progenitors in mouse oval cell injury.

Authors:  Branden D Tarlow; Milton J Finegold; Markus Grompe
Journal:  Hepatology       Date:  2014-05-28       Impact factor: 17.425

9.  A knock-in allele of En1 expressing dre recombinase.

Authors:  Nicholas W Plummer; Jacqueline de Marchena; Patricia Jensen
Journal:  Genesis       Date:  2016-07-09       Impact factor: 2.487

10.  Subepicardial endothelial cells invade the embryonic ventricle wall to form coronary arteries.

Authors:  Xueying Tian; Tianyuan Hu; Hui Zhang; Lingjuan He; Xiuzhen Huang; Qiaozhen Liu; Wei Yu; Liang He; Zhongzhou Yang; Zhen Zhang; Tao P Zhong; Xiao Yang; Zhen Yang; Yan Yan; Antonio Baldini; Yunfu Sun; Jie Lu; Robert J Schwartz; Sylvia M Evans; Adriana C Gittenberger-de Groot; Kristy Red-Horse; Bin Zhou
Journal:  Cell Res       Date:  2013-06-25       Impact factor: 25.617

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  81 in total

Review 1.  The epicardium as a hub for heart regeneration.

Authors:  Jingli Cao; Kenneth D Poss
Journal:  Nat Rev Cardiol       Date:  2018-10       Impact factor: 32.419

Review 2.  Targeting Age-Related Pathways in Heart Failure.

Authors:  Haobo Li; Margaret H Hastings; James Rhee; Lena E Trager; Jason D Roh; Anthony Rosenzweig
Journal:  Circ Res       Date:  2020-02-13       Impact factor: 17.367

3.  Dual lineage tracing identifies intermediate mesenchymal stage for endocardial contribution to fibroblasts, coronary mural cells, and adipocytes.

Authors:  Xinyan Huang; Teng Feng; Zhen Jiang; Jufeng Meng; Shan Kou; Zhengkai Lu; Weize Chen; Chao-Po Lin; Bin Zhou; Hui Zhang
Journal:  J Biol Chem       Date:  2019-04-22       Impact factor: 5.157

4.  Efficient photoactivatable Dre recombinase for cell type-specific spatiotemporal control of genome engineering in the mouse.

Authors:  Huiying Li; Qiansen Zhang; Yiran Gu; Yingyin Wu; Yamei Wang; Liren Wang; Shijie Feng; Yaqiang Hu; Yansen Zheng; Yongmei Li; Haifeng Ye; Bin Zhou; Longnian Lin; Mingyao Liu; Huaiyu Yang; Dali Li
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 11.205

Review 5.  Stimulating Cardiogenesis as a Treatment for Heart Failure.

Authors:  Todd R Heallen; Zachary A Kadow; Jong H Kim; Jun Wang; James F Martin
Journal:  Circ Res       Date:  2019-05-24       Impact factor: 17.367

Review 6.  Genetic lineage tracing with multiple DNA recombinases: A user's guide for conducting more precise cell fate mapping studies.

Authors:  Kuo Liu; Hengwei Jin; Bin Zhou
Journal:  J Biol Chem       Date:  2020-03-25       Impact factor: 5.157

Review 7.  The heart of the neural crest: cardiac neural crest cells in development and regeneration.

Authors:  Rajani M George; Gabriel Maldonado-Velez; Anthony B Firulli
Journal:  Development       Date:  2020-10-15       Impact factor: 6.868

8.  Lgr5+ pericentral hepatocytes are self-maintained in normal liver regeneration and susceptible to hepatocarcinogenesis.

Authors:  Chow Hiang Ang; Shih Han Hsu; Fusheng Guo; Chong Teik Tan; Victor C Yu; Jane E Visvader; Pierce K H Chow; Nai Yang Fu
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-05       Impact factor: 11.205

9.  Abcg2-expressing side population cells contribute to cardiomyocyte renewal through fusion.

Authors:  Amritha Yellamilli; Yi Ren; Ron T McElmurry; Jonathan P Lambert; Polina Gross; Sadia Mohsin; Steven R Houser; John W Elrod; Jakub Tolar; Daniel J Garry; Jop H van Berlo
Journal:  FASEB J       Date:  2020-02-25       Impact factor: 5.191

10.  A Novel Cre Recombinase-Mediated In Vivo Minicircle DNA (CRIM) Vaccine Provides Partial Protection against Newcastle Disease Virus.

Authors:  Yanlong Jiang; Xing Gao; Ke Xu; Jianzhong Wang; Haibin Huang; Chunwei Shi; Wentao Yang; Yuanhuan Kang; Roy Curtiss; Guilian Yang; Chunfeng Wang
Journal:  Appl Environ Microbiol       Date:  2019-07-01       Impact factor: 4.792

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