Literature DB >> 29116789

Hydration and Ion Pairing in Aqueous Mg2+ and Zn2+ Solutions: Force-Field Description Aided by Neutron Scattering Experiments and Ab Initio Molecular Dynamics Simulations.

Elise Duboué-Dijon1, Philip E Mason1, Henry E Fischer2, Pavel Jungwirth1.   

Abstract

Magnesium and zinc dications possess the same charge and have an almost identical size, yet they behave very differently in aqueous solutions and play distinct biological roles. It is thus crucial to identify the origins of such different behaviors and to assess to what extent they can be captured by force-field molecular dynamics simulations. In this work, we combine neutron scattering experiments in a specific mixture of H2O and D2O (the so-called null water) with ab initio molecular dynamics simulations to probe the difference in the hydration structure and ion-pairing properties of chloride solutions of the two cations. The obtained data are used as a benchmark to develop a scaled-charge force field for Mg2+ that includes electronic polarization in a mean field way. We show that using this electronic continuum correction we can describe aqueous magnesium chloride solutions well. However, in aqueous zinc chloride specific interaction terms between the ions need to be introduced to capture ion pairing quantitatively.

Entities:  

Year:  2017        PMID: 29116789     DOI: 10.1021/acs.jpcb.7b09612

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  7 in total

1.  Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields.

Authors:  Dmitry Bedrov; Jean-Philip Piquemal; Oleg Borodin; Alexander D MacKerell; Benoît Roux; Christian Schröder
Journal:  Chem Rev       Date:  2019-05-29       Impact factor: 60.622

2.  Contact pairs of RNA with magnesium ions-electrostatics beyond the Poisson-Boltzmann equation.

Authors:  Benjamin Philipp Fingerhut; Jakob Schauss; Achintya Kundu; Thomas Elsaesser
Journal:  Biophys J       Date:  2021-10-27       Impact factor: 4.033

3.  Optimized Magnesium Force Field Parameters for Biomolecular Simulations with Accurate Solvation, Ion-Binding, and Water-Exchange Properties in SPC/E, TIP3P-fb, TIP4P/2005, TIP4P-Ew, and TIP4P-D.

Authors:  Kara K Grotz; Nadine Schwierz
Journal:  J Chem Theory Comput       Date:  2021-12-09       Impact factor: 6.006

Review 4.  The mutual interactions of RNA, counterions and water - quantifying the electrostatics at the phosphate-water interface.

Authors:  Benjamin Philipp Fingerhut
Journal:  Chem Commun (Camb)       Date:  2021-12-03       Impact factor: 6.222

5.  Probing aqueous ions with non-local Auger relaxation.

Authors:  Geethanjali Gopakumar; Eva Muchová; Isaak Unger; Sebastian Malerz; Florian Trinter; Gunnar Öhrwall; Filippo Lipparini; Benedetta Mennucci; Denis Céolin; Carl Caleman; Iain Wilkinson; Bernd Winter; Petr Slavíček; Uwe Hergenhahn; Olle Björneholm
Journal:  Phys Chem Chem Phys       Date:  2022-04-13       Impact factor: 3.676

6.  Accurate Biomolecular Simulations Account for Electronic Polarization.

Authors:  Josef Melcr; Jean-Philip Piquemal
Journal:  Front Mol Biosci       Date:  2019-12-04

7.  Rolling circle RNA synthesis catalyzed by RNA.

Authors:  Emil Laust Kristoffersen; Matthew Burman; Agnes Noy; Philipp Holliger
Journal:  Elife       Date:  2022-02-02       Impact factor: 8.713

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.