Literature DB >> 29116346

Spirosoma humi sp. nov., Isolated from Soil in South Korea.

Li Weilan1, Jae-Jin Lee1, Seung-Yeol Lee1, Sangkyu Park1, Leonid N Ten1, Hee-Young Jung2,3.   

Abstract

A Gram-stain-negative, non-motile, rod-shaped, aerobic bacterial strain, designated S7-4-1T, was isolated from soil in Gyeongsangnam-do, South Korea and characterized using a polyphasic approach to determine its taxonomic position. Phylogenic analysis based on the 16S rRNA gene sequence showed that strain S7-4-1T belonged to the family Cytophagaceae and was most closely related to Spirosoma fluviale MSd3T (96.2%), 'Spirosoma radiotolerans' DG5A (96.0%), Spirosoma pulveris JSH5-14T (95.9%), and Spirosoma linguale DSM 74T (95.8%). The G+C content of the genomic DNA of the isolate was 49.0 mol%. The strain contained summed feature 3 (C16:1 ω7c/C16:1 ω6c; 41.0%), C16:1 ω5c (24.9%), and C15:0 iso (9.3%) as the major fatty acids, menaquinone MK-7 as the predominant respiratory quinone, and phosphatidylethanolamine and an unidentified aminophospholipid as the main polar lipids, which supported its affiliation with the genus Spirosoma. The results of physiological and biochemical tests allowed the genotypic and phenotypic differentiation of the isolate from recognized Spirosoma species. On the basis of its phenotypic properties, genotypic distinctiveness, and chemotaxonomic features, strain S7-4-1T represents a novel species of the genus Spirosoma, for which the name Spirosoma humi sp. nov. is proposed. The type strain is S7-4-1T (= KCTC 52729T = JCM 32132T).

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Year:  2017        PMID: 29116346     DOI: 10.1007/s00284-017-1384-x

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  29 in total

1.  16S ribosomal DNA amplification for phylogenetic study.

Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

2.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

3.  List of novel names and novel combinations previously effectively, but not validly, published.

Authors:  Aharon Oren; George M Garrity
Journal:  Int J Syst Evol Microbiol       Date:  2017-07       Impact factor: 2.747

4.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

5.  Spirosoma swuense sp. nov., isolated from wet soil.

Authors:  Eun Sun Joo; Eun Bit Kim; Seon Hwa Jeon; Sathiyaraj Srinivasan; Myung Kyum Kim
Journal:  Int J Syst Evol Microbiol       Date:  2017-04-03       Impact factor: 2.747

6.  Spirosoma radiotolerans sp. nov., a gamma-radiation-resistant bacterium isolated from gamma ray-irradiated soil.

Authors:  Jae-Jin Lee; Sathiyaraj Srinivasan; Sangyong Lim; Minho Joe; Seonghun Im; So Il Bae; Kyoung Ryun Park; Ji-Hee Han; Se-Hee Park; Bo-Min Joo; Sol-Ji Park; Myung Kyum Kim
Journal:  Curr Microbiol       Date:  2014-04-20       Impact factor: 2.188

7.  Spirosoma rigui sp. nov., isolated from fresh water.

Authors:  Keun Sik Baik; Mi Sun Kim; Seong Chan Park; Dong Wan Lee; Soon Dong Lee; Jong-Ok Ka; Sang Ki Choi; Chi Nam Seong
Journal:  Int J Syst Evol Microbiol       Date:  2007-12       Impact factor: 2.747

8.  Spirosoma lacussanchae sp. nov., a phosphate-solubilizing bacterium isolated from a freshwater reservoir.

Authors:  Yong Li; Meng-Jie Ai; Ye Sun; Yu-Qin Zhang; Jian-Qiang Zhang
Journal:  Int J Syst Evol Microbiol       Date:  2017-08-25       Impact factor: 2.747

9.  Spirosoma fluviale sp. nov., isolated from river water.

Authors:  Kouta Hatayama; Teruaki Kuno
Journal:  Int J Syst Evol Microbiol       Date:  2015-07-09       Impact factor: 2.747

10.  Spirosoma aerolatum sp. nov., isolated from a motor car air conditioning system.

Authors:  Dong-Uk Kim; Hyosun Lee; Song-Gun Kim; Jae-Hyung Ahn; So Yoon Park; Jong-Ok Ka
Journal:  Int J Syst Evol Microbiol       Date:  2015-11       Impact factor: 2.747

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