| Literature DB >> 29115639 |
Jin Yang1, Liu-Lin Xiong2, You-Cui Wang3, Xiang He2, Ling Jiang2, Song-Jun Fu1, Xue-Fei Han1, Jia Liu4, Ting-Hua Wang1.
Abstract
It has been reported that oligodendrocyte precursor cells (OPCs) may be used to treat contusive spinal cord injury (SCC), and may alter microRNA (miRNA/miR) expression following SCC in rats. However, the association between miRNA expression and the treatment of rats with SCC with OPC transplantation remain unclear. The present study transplanted OPCs into the spinal cord of rats with SCC and subsequently used the Basso, Beattie and Bresnahan (BBB) score to assess the functional recovery and pain scores. An miRNA assay was performed to detect differentially expressed miRNAs in the spinal cord of SCC rats transplanted with OPCs, compared with SCC rats transplanted with medium. Quantitative polymerase chain reaction was used to verify significantly altered miRNA expression levels. The results demonstrated that OPC transplantation was able to improve motor recovery and relieve mechanical allodynia in rats with SCC. In addition, through a miRNA assay, 45 differentially expressed miRNAs (40 upregulated miRNAs and 5 downregulated miRNAs) were detected in the spinal cord of rats in the OPC group compared with in the Medium group. Differentially expressed miRNAs were identified according to the following criteria: Fold change >2 and P<0.05. Furthermore, quantitative polymerase chain reaction was used to verify the most highly upregulated (miR‑375‑3p and miR‑1‑3p) and downregulated (miR‑363‑3p, miR‑449a‑5p and miR‑3074) spinal cord miRNAs that were identified in the miRNA assay. In addition, a bioinformatics analysis of these miRNAs indicated that miR‑375 and miR‑1 may act primarily to inhibit cell proliferation and apoptosis via transcriptional and translational regulation, whereas miR‑363, miR‑449a and miR‑3074 may act primarily to inhibit cell proliferation and neuronal differentiation through transcriptional regulation. These results suggested that OPC transplantation may promote functional recovery of rats with SCC, which may be associated with the expression of various miRNAs in the spinal cord, including miR‑375‑3p, miR‑1‑3p, miR‑363‑3p, miR‑449a‑5p and miR‑3074.Entities:
Mesh:
Substances:
Year: 2017 PMID: 29115639 PMCID: PMC5780154 DOI: 10.3892/mmr.2017.7957
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 2.952
Animals and grouping.
| Group | BBB score (no. of rats) | miRNA chip (no. of rats) | qPCR (no. of rats) |
|---|---|---|---|
| Sham | 5 | 0 | 0 |
| SCC | 5 | 0 | 0 |
| Medium | 5 | 3 | 3 |
| OPC | 5 | 3 | 3 |
BBB score was measured on days 1, 3, 7, 14, 21 and 28 post transplantation; miRNA chip analysis and qPCR were conducted on day 7. BBB, Basso, Beattie and Bresnahan; miRNA, microRNA; OPC, oligodendrocyte precursor cells; SCC, contusive spinal cord injury; qPCR, quantitative polymerase chain reaction.
Primer sequence catalogue numbers for miRNAs.
| miRNA | Number |
|---|---|
| rno-miR-375-5p | RmiRQP3367 |
| rno-miR-1-3p | RmiRQP1188 |
| rno-miR-363-3p | RmiRQP3254 |
| rno-miR-449a-5p | RmiRQP0504 |
| rno-miR-3074 | RmiRQP1482 |
miRNA, micro RNA.
Figure 1.Identification of GFP-OPCs. GFP-OPCs induced from induced pluripotent stem cells derived from mouse embryonic fibroblasts were cultured in differentiation medium for 24 days. Subsequently, cells were cultured in basal-OPC-medium containing PDGF. (A) PDGF staining was conducted, and >90% of cells expressed PDGF. (B) DAPI nuclear staining was used to counterstain the cells (blue staining). (C) GFP detection indicated that cells displayed bipolar or tripolar morphology, which is typical of OPCs. (D) Merged image. Scale bar: 25 µm. GFP, green fluorescent protein; OPCs, oligodendrocyte precursor cells; PDGF, platelet-derived growth factor.
Figure 2.Results of behavioral analyses. (A) With the exception of day 1 and 3, treatment with OPCs resulted in significantly higher BBB scores compared with in the Medium group. (B) Mechanical allodynia data from the paw withdrawal threshold analysis. On days 1 and 3 post-transplantation, the OPC, Medium and SCC groups exhibited a decreased paw withdrawal threshold, indicating mechanical allodynia, compared with in the Sham group. Rats in the OPC group exhibited significant attenuation of paw withdrawal threshold compared with in the Medium group. *P<0.05, **P<0.01 vs. the Medium group. BBB, Basso, Beattie and Bresnahan; OPC, oligodendrocyte precursor cell; SCC, contusive spinal cord injury.
Differentially expressed miRNAs in the spinal cord of rats from the oligodendrocyte precursor cell transplantation group compared with the Medium group.
| miRNA | log2 (fold change) | Expression | Species | Sequence length (bp) | Sequence (5′-3′) |
|---|---|---|---|---|---|
| rno-miR-1-3p | 3.932485 | Up | 22 | UGGAAUGUAAAGAAGUGUGUAU | |
| rno-miR-496-3p | 2.874668 | Up | 21 | AGUAUUACAUGGCCAAUCUCC | |
| rno-miR-758-3p | 2.632376 | Up | 22 | UUUGUGACCUGGUCCACUAACC | |
| rno-miR-206-3p | 2.552146 | Up | 22 | UGGAAUGUAAGGAAGUGUGUGG | |
| rno-miR-375-3p | 2.413651 | Up | 22 | UUUGUUCGUUCGGCUCGCGUGA | |
| rno-miR-133a-3p | 2.264416 | Up | 22 | UUUGGUCCCCUUCAACCAGCUG | |
| rno-miR-379-3p | 2.227997 | Up | 22 | CUAUGUAACAUGGUCCACUAAC | |
| rno-miR-335 | 2.224635 | Up | 23 | UCAAGAGCAAUAACGAAAAAUGU | |
| rno-miR-133b-3p | 2.198147 | Up | 22 | UUUGGUCCCCUUCAACCAGCUA | |
| rno-miR-21-3p | 2.15513 | Up | 22 | CAACAGCAGUCGAUGGGCUGUC | |
| rno-miR-134-3p | 1.966194 | Up | 22 | CUGUGGGCCACCUAGUCACCAA | |
| rno-let-7a-2-3p | 1.875046 | Up | 22 | CUGUACAGCCUCCUAGCUUUCC | |
| rno-miR-764-5p | 1.757712 | Up | 22 | GGUGCUCACAUGUCCUCCUCCA | |
| rno-miR-369-5p | 1.688398 | Up | 22 | AGAUCGACCGUGUUAUAUUCGC | |
| rno-miR-485-3p | 1.6806526 | Up | 22 | CAUACACGGCUCUCCUCUCUUC | |
| rno-miR-376a-3p | 1.67571 | Up | 21 | AUCGUAGAGGAAAAUCCACGU | |
| rno-miR-133a-5p | 1.5515371 | Up | 22 | AGCUGGUAAAAUGGAACCAAAU | |
| rno-miR-124-5p | 1.505714 | Up | 22 | CGUGUUCACAGCGGACCUUGAU | |
| rno-miR-218a-5p | 1.499168 | Up | 21 | UUGUGCUUGAUCUAACCAUGU | |
| rno-miR-323-3p | 1.491767 | Up | 21 | CACAUUACACGGUCGACCUCU | |
| rno-miR-361-3p | 1.343701 | Up | 24 | CCCCCAGGUGUGAUUCUGAUUCGU | |
| rno-miR-500-5p | 1.336195 | Up | 24 | AAUCCUUGCUAUCUGGGUGCUUAG | |
| rno-miR-20a-3p | 1.3328006 | Up | 21 | ACUGCAUUACGAGCACUUACA | |
| rno-miR-493-3p | 1.332116 | Up | 21 | UGAAGGUCUACUGUGUGCCAG | |
| rno-miR-551b-3p | 1.316522 | Up | 23 | GGCGACCCAUACUUGGUUUCAGU | |
| rno-miR-122-5p | 1.3071 | Up | 22 | UGGAGUGUGACAAUGGUGUUUG | |
| rno-miR-764-3p | 1.268782 | Up | 23 | GAGGAGGCCAUAGUGGCAACUGU | |
| rno-miR-433-5p | 1.248092 | Up | 22 | UACGGUGAGCCUGUCAUUAUUC | |
| rno-miR-411-5p | 1.203803 | Up | 21 | UAGUAGACCGUAUAGCGUACG | |
| rno-miR-200b-5p | 1.201743 | Up | 22 | CAUCUUACUGGGCAGCAUUGGA | |
| rno-miR-511-3p | 1.200015 | Up | 21 | AAUGUGUAGCAAAAGACAGGA | |
| rno-miR-380-3p | 1.17496 | Up | 21 | UAUGUAGUAUGGUCCACAUCU | |
| rno-miR-137-5p | 1.142088 | Up | 22 | ACGGGUAUUCUUGGGUGGAUAA | |
| rno-miR-292-3p | 1.134055 | Up | 23 | AAGUGCCGCCAGGUUUUGAGUGU | |
| rno-miR-381-5p | 1.117327 | Up | 22 | AGCGAGGUUGCCCUUUGUAUAU | |
| rno-miR-873-3p | 1.064982 | Up | 21 | GAGACUGACAAGUUCCCGGGA | |
| rno-miR-10b-3p | 1.063514 | Up | 21 | ACAGAUUCGAUUCUAGGGGAA | |
| rno-miR-434-5p | 1.02408 | Up | 23 | AGCUCGACUCAUGGUUUGAACCA | |
| rno-miR-205 | 1.015991 | Up | 23 | UCCUUCAUUCCACCGGAGUCUGU | |
| rno-miR-154-5p | 1.003104 | Up | 22 | UAGGUUAUCCGUGUUGCCUUCG | |
| rno-miR-92a-1-5p | −1.138072 | Down | 23 | AGGUUGGGAUUUGUCGCAAUGCU | |
| rno-miR-449a-5p | −1.414279 | Down | 22 | UGGCAGUGUAUUGUUAGCUGGU | |
| rno-miR-363-3p | −1.172769 | Down | 21 | AAUUGCACGGUAUCCAUCUGU | |
| rno-miR-449c-3p | −1.0767871 | Down | 17 | UAGAACUUCGUCCCAAC | |
| rno-miR-3074 | −1.463293 | Down | 22 | GAUAUCAGCUCAGUAGGCACCG |
miR/miRNA, microRNA.
Figure 3.Significant differentially expressed miRNAs. (A) Top 10 upregulated miRNAs and 5 downregulated miRNAs. (B and C) Heat map of the 15 significant differentially expressed miRNAs. miR/miRNA, microRNA; OPC, oligodendrocyte precursor cell.
Figure 4.GO analysis of the target genes of differentially expressed miRNAs. (A) Top 10 significantly enriched GO terms associated with the target genes of the 40 upregulated miRNAs. (B) Top 10 significantly enriched GO terms associated with the target genes of the 5 downregulated miRNAs. Numbers indicate the number of genes enriched in that GO term. GO, Gene Ontology; miRNA, microRNA.
Figure 5.Kyoto Encyclopedia of Genes and Genomes pathway analysis of the target genes of differentially expressed miRNAs. (A) Top 10 significant pathways of the target genes of the 40 upregulated miRNAs. (B) Top 10 significant pathways of the target genes of the 5 downregulated miRNAs. Numbers indicate the number of genes enriched in that pathway. miRNA, microRNA.
Figure 6.Verification of miRNA expression profiles in the spinal cord of rats in the OPC group compared with in the Medium group. The relative expression levels of the most significantly altered miRNAs were examined using quantitative polymerase chain reaction in the spinal cord of rats from the Medium and OPC groups. (A and B) Relative expression levels of rno-miR-375-3p and rno-miR-1-3p, which were revealed to be upregulated in a miRNA assay. **P<0.01. (C) Relative expression levels of rno-miR-363-3p, rno-miR-449a-5p and rno-miR-3074, which were revealed to be downregulated in a miRNA assay. miR/miRNA, microRNA; OPC, oligodendrocyte precursor cell.
Statistical annotation of miRNA function.
| GO ID/pathway function term | Gene count | P-value |
|---|---|---|
| miR-375 and miR-1 common targets | ||
| GO:0045893-positive regulation of transcription, DNA-dependent | 2 | 1.96792×10−24 |
| GO:0045944-positive regulation of transcription from RNA polymerase II promoter | 2 | 9.15325×10−21 |
| GO:0006351-transcription, DNA-dependent | 1 | 2.48966×10−15 |
| GO:0000122-negative regulation of transcription from RNA polymerase II promoter | 1 | 5.12873×10−13 |
| GO:0006355-regulation of transcription, DNA-dependent | 1 | 5.9179×10−13 |
| GO:0006417-regulation of translation | 1 | 0.000151831 |
| GO:0006486-protein glycosylation | 1 | 1.21081×10−10 |
| GO:0006915-apoptotic process | 3 | 3.19378×10−10 |
| GO:0043066-negative regulation of apoptotic process | 3 | 7.94504×10−10 |
| GO:0043065-positive regulation of apoptotic process | 1 | 2.34005×10−6 |
| GO:0051402-neuron apoptotic process | 1 | 1.43174×10−5 |
| GO:0043524-negative regulation of neuron apoptotic process | 2 | 7.17984×10−6 |
| GO:0008283-cell proliferation | 3 | 0.001320952 |
| GO:0008285-negative regulation of cell proliferation | 1 | 3.71268×10−10 |
| GO:0008284-positive regulation of cell proliferation | 4 | 4.37506×10−10 |
| GO:0042552-myelination | 2 | 0.0003695 |
| GO:0035556-intracellular signal transduction | 3 | 1.05697×10−10 |
| GO:0000165-MAPK cascade | 1 | 0.000318552 |
| Path_id:1100-Metabolic pathways | 4 | 7.89723×10−14 |
| Path_id:4144-Endocytosis | 1 | 2.5492×10−13 |
| Path_id:4010-MAPK signaling pathway | 1 | 4.94224×10−11 |
| Path_id:4020-Calcium signaling pathway | 2 | 1.24247×10−8 |
| Path_id:4070-Phosphatidylinositol signaling system | 1 | 1.86855×10−7 |
| Path_id:4310-Wnt signaling pathway | 1 | 2.71935×10−7 |
| Path_id:4151-PI3K-Akt signaling pathway | 5 | 1.92934×10−5 |
| Path_id:3015-mRNA surveillance pathway | 1 | 0.000876288 |
| Path_id:4064-NF-κB signaling pathway | 2 | 0.008087159 |
| Path_id:4514-Cell adhesion molecules (CAMs) | 1 | 0.048139487 |
| miR-363, miR-449a and miR-3074 common targets | ||
| GO:0000122-negative regulation of transcription from RNA polymerase II promoter | 2 | 9.32468×10−5 |
| GO:0045944-positive regulation of transcription from RNA polymerase II promoter | 3 | 0.000267853 |
| GO:0006355-regulation of transcription, DNA-dependent | 1 | 0.006384786 |
| GO:0006468-protein phosphorylation | 1 | 2.21252×10−6 |
| GO:0015031-protein transport | 1 | 0.032924475 |
| GO:0030182-neuron differentiation | 2 | 6.76381×10−5 |
| GO:0008285-negative regulation of cell proliferation | 1 | 0.003549981 |
| GO:0007264-small GTPase mediated signal transduction | 1 | 0.014162188 |
| GO:0007165-signal transduction | 2 | 0.044607167 |
| Path_id:4630-Jak-STAT signaling pathway | 2 | 0.009890945 |
GO, Gene Ontology; Jak, Janus kinase; MAPK, mitogen-activated protein kinase; miR/miRNA, microRNA; NF-κB, nuclear factor-κB; PI3K, phosphoinositide 3-kinase; STAT, signal transducer and activator of transcription.