| Literature DB >> 29109459 |
Xia Sheng1, Hailiang Zhao1,2, Lin Du3.
Abstract
Coal combustion causes indoor pollution of CO. In this work, DFT calculations on cobalt corrole (Co(Cor)) with three most common indoor gas molecules (N2, O2 and CO) were performed. The Mulliken spin densities show that the ground states of Co(N2)(Cor), Co(CO)(Cor) and Co(OC)(Cor) have an anti-ferromagnetic coupling fashion of the electrons on the Co 3d z2 orbital and the π orbital of the corrole ring. However, Co(O2)(Cor) has a triplet ground state. With the spin contamination corrections, the Co(N2)(Cor) binding energy was obtained at -50.6 kcal mol-1 (B3LYP-D3). While CO can interact with Co(Cor) in two different ways, and their binding energies were -22.8 and -10.9 kcal mol-1 (B3LYP-D3) for Co(CO)(Cor) and Co(OC)(Cor), respectively. The natural bond orbital charges on the axial ligands (NO, CO, OC) are increased upon the chemical bond formation. These are the cause of the shorten metal-ligand bond and the increase of the wavenumber of the metal-ligand bond vibrational transitions. While the charges for O2 are decreased, leading to bond elongation as well as the decrease of the wavenumber upon complexation. Overall, O2 was found to be hardly coordinated with Co(Cor). This study provides a detailed molecular understanding of interactions between a gas sensor and gaseous indoor air-pollutants.Entities:
Year: 2017 PMID: 29109459 PMCID: PMC5674038 DOI: 10.1038/s41598-017-15228-5
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Mulliken spin densities (a.u.), expectation values
| Methods | <S2> | Co | Cor | L | NUEa |
|
|---|---|---|---|---|---|---|
|
| ||||||
| BP86 | 0.0 | 0.0 | 0.0 | 0.0 | 0 | −7.7 |
| OLYP | 0.0 | 0.0 | 0.0 | 0.0 | 0 | 8.6 |
| B3LYP | 0.0 | 0.0 | 0.0 | 0.0 | 0 | 29.4 |
| B3LYPc | 1.3247 | −0.5162 | −0.8813 | 1.3975 | 2.6 | 10.6 (13.1) |
| B3LYP-D3 | 0.0 | 0.0 | 0.0 | 0.0 | 0 | 24.9 |
| B3LYP-D3c | 1.3247 | −0.5162 | −0.8813 | 1.3975 | 2.6 | 6.1 (9.0) |
|
| ||||||
| BP86 | 0.0 | 0.0 | 0.0 | 0.0 | 0 | −41.5 |
| OLYP | 0.0 | 0.0 | 0.0 | 0.0 | 0 | −29.7 |
| B3LYP | 0.0 | 0.0 | 0.0 | 0.0 | 0 | −30.3 |
| B3LYPc | 0.7074 | 0.8026 | −0.8345 | 0.0319 | 1.4 | −45.9 (−35.0) |
| B3LYP-D3 | 0.0 | 0.0 | 0.0 | 0.0 | 0 | −35.0 |
| B3LYP-D3c | 0.7074 | 0.8026 | −0.8345 | 0.0319 | 1.4 | −50.6 (−39.7) |
|
| ||||||
| BP86 | 0.0 | 0.0 | 0.0 | 0.0 | 0 | −34.1 |
| OLYP | 0.0 | 0.0 | 0.0 | 0.0 | 0 | −21.4 |
| B3LYP | 0.0 | 0.0 | 0.0 | 0.0 | 0 | −14.1 |
| B3LYPc | 0.2105 | 0.4085 | −0.4294 | 0.0209 | 0.4 | −18.3 (−14.3) |
| B3LYP-D3 | 0.0 | 0.0 | 0.0 | 0.0 | 0 | −18.5 |
| B3LYP-D3c | 0.2105 | 0.4085 | −0.4294 | 0.0209 | 0.4 | −22.8 (−18.8) |
|
| ||||||
| BP86 | 0.0 | 0.0 | 0.0 | 0.0 | 0 | 6.4 |
| OLYP | 0.0 | 0.0 | 0.0 | 0.0 | 0 | 17.1 |
| B3LYP | 0.0 | 0.0 | 0.0 | 0.0 | 0 | 15.8 |
| B3LYPc | 0.9070 | 0.9882 | −0.9922 | 0.0040 | 1.8 | −6.5 (3.7) |
| B3LYP-D3 | 0.0 | 0.0 | 0.0 | 0.0 | 0 | 11.5 |
| B3LYP-D3c | 0.9070 | 0.9882 | −0.9922 | 0.0040 | 1.8 | −10.9 (−0.7) |
aNUE = effective number of unpaired electrons. b BEs corrected with ZPVE. cBroken-symmetry (BS) solution. Values corrected for spin contamination, uncorrected values given within parentheses.
Mulliken spin densities (a.u.), expectation values
| Methods | < S2> | Co | Cor | L | NUEa |
|
|---|---|---|---|---|---|---|
|
| ||||||
| BP86 | 2.0730 | −0.0213 | 0.8653 | 1.1560 | 2.1 | −9.7 |
| OLYP | 2.1133 | −0.1233 | 0.8862 | 1.2371 | 2.2 | 4.5 |
| B3LYP | 2.4304 | −0.5583 | 1.0158 | 1.5425 | 2.8 | 3.1 |
| B3LYP-D3 | 2.4304 | −0.5583 | 1.0158 | 1.5425 | 2.8 | −1.3 |
|
| ||||||
| BP86 | 2.0157 | 1.2844 | 0.6941 | 0.0215 | 2.0 | −36.9 |
| OLYP | 2.0235 | 1.3469 | 0.6401 | 0.0130 | 2.0 | −28.1 |
| B3LYP | 2.0214 | 1.2042 | 0.7834 | 0.0124 | 2.0 | −38.8 |
| B3LYP-D3 | 2.0214 | 1.2042 | 0.7834 | 0.0124 | 2.0 | −43.3 |
|
| ||||||
| BP86 | 2.0117 | 1.0083 | 0.8650 | 0.1267 | 2.0 | −18.3 |
| OLYP | 2.0191 | 1.0675 | 0.8214 | 0.1111 | 2.0 | −7.0 |
| B3LYP | 2.0183 | 0.9770 | 0.9390 | 0.0840 | 2.0 | −8.7 |
| B3LYP-D3 | 2.0183 | 0.9770 | 0.9390 | 0.0840 | 2.0 | −12.9 |
aNUE = effective number of unpaired electrons. bBEs corrected with ZPVE.
Figure 1DFT spin density plots for the broken-symmetry singlet and triplet states of the Co(L)(Cor) (L = O2, N2, CO, OC) systems (spin density in red/green, contour value 1 × 10−3 a.u.).
Spin projection results (kcal mol−1) for the singlet BS states of Co(L)(Cor) (L = O2, N2, CO, OC).
| System | Δ | < | < | J | Δ |
|---|---|---|---|---|---|
| Co(O2)(Cor) | 1.4 | 1.3247 | 2.3653 | 1.3 | 1.8 |
| Co(N2)(Cor) | −12.1 | 0.7074 | 2.0220 | −9.2 | −6.5 |
| Co(CO)(Cor) | −18.7 | 0.2105 | 2.0201 | −10.3 | −2.2 |
| Co(OC)(Cor) | −7.7 | 0.9070 | 2.0365 | −6.8 | −6.2 |
Relative energies (kcal mol−1) of the singlet and triplet electronic states of Co(L)(Cor) (L = O2, N2, CO, OC) with respect to their corresponding ground state.
| State | Configuration | O2 | N2 | CO | OC |
|---|---|---|---|---|---|
|
| |||||
| Singlet |
| 1.1 | 0.0 | 0.0 | 0.0 |
| Triplet |
| 0.0 | 6.3 | 17.5 | NP |
|
| |||||
| Singlet (BS) |
| 8.2 (6.4) | 0.0 (0.0) | 0.0 (0.0) | 0.0 (0.0) |
| Singlet |
| 25.2 (25.2) | 13.2 (4.7) | 2.4 (0.2) | 18.3 (12.1) |
| Triplet |
| 0.0 (0.0) | 6.5 (−2.0) | 9.8 (7.6) | NP |
aNP = not possible. aValues corrected for spin contamination, uncorrected values given within parentheses.
Selected bond lengths (Å), cobalt out-of-plane displacements (Å), angles (degrees) and ligand stretching frequencies (cm−1) for the lowest Co(L)(Cor) states and the free gas molecules at the BP86/def2-TZVP levela.
| parameters | Co(O2)(Cor) | Co(N2)(Cor) | Co(CO)(Cor) | Co(OC)(Cor) | |||
|---|---|---|---|---|---|---|---|
| Singlet | Triplet | Singlet | Triplet | Singlet | Triplet | Singlet | |
| r(Co-N) | 1.889 | 1.894 | 1.897 | 1.886 | 1.895 | 1.898 | 1.893 |
| r(Co-L) | 1.802 | 1.854 | 1.788 | 2.106 | 1.727 | 1.902 | 1.964 |
| θ(Co-L) | 121.4 | 120.4 | 180.0 | 168.7 | 180.0 | 164.4 | 180.0 |
| d(Co-N4) | 0.301 | 0.223 | 0.316 | 0.209 | 0.436 | 0.287 | 0.273 |
| r(L) | 1.264 | 1.268 | 1.119 | 1.108 | 1.154 | 1.150 | 1.149 |
|
| 1256 | 1250 | 2186 | 2263 | 2029 | 1994 | 1990 |
|
| |||||||
| r(L) | 1.221 | 1.291 | 1.214 | 1.214 | |||
|
| 1542 | 1480 | 1728 | 1728 | |||
ar(Co-N) is the mean bond length between Co and the four nitrogen atoms. r(Co-L) is the distance between Co and the ligand. θ(Co-L) is the angle between Co and the ligand. d(Co-N4) is the cobalt out-of-plane (plane is defined by the four nitrogen atoms) displacement. r(L) is the bond length of the ligand. (L) is the ligand stretching vibrational frequency.
Figure 2The AIM plots of the Co(L)(Cor) complexes obtained at the B3LYP-D3/def2-TZVP level. The bond critical points (BCPs) and ring critical points (RCPs) are presented by the red and yellow balls, respectively.
AIM parameters and NBO charge changes of Co and L from different complexes to monomer obtained at the B3LYP-D3/def2-TZVP level.
| Conformer | State |
| ∇2
| Δ | Δ |
|---|---|---|---|---|---|
| Co(O2)(Cor) | Singlet (BS) | 0.0953 | 0.9240 | −0.2777 | −0.1441 |
| Singlet | 0.1126 | 0.5385 | −0.2805 | −0.0948 | |
| Triplet | 0.1168 | 0.4885 | −0.2461 | −0.0746 | |
| Co(N2)(Cor) | Singlet (BS) | 0.1233 | 0.9321 | −0.4484 | 0.1737 |
| Singlet | 0.1133 | 0.9901 | −0.4542 | 0.2465 | |
| Triplet | 0.0522 | 0.3216 | −0.2525 | 0.1385 | |
| Co(CO)(Cor) | Singlet (BS) | 0.1203 | 1.1472 | −0.7314 | 0.4587 |
| Singlet | 0.1246 | 1.0735 | −0.7333 | 0.4860 | |
| Triplet | 0.1035 | 0.5017 | −0.1969 | 0.1994 | |
| Co(OC)(Cor) | Singlet (BS) | 0.0514 | 0.6175 | −0.2388 | 0.0955 |
| Singlet | 0.0620 | 0.5313 | −0.2261 | 0.1481 |
Figure 3Molecular structure of Co(L)(Cor) (L = O2, N2, CO, OC). The , and positions are the possible ligand orientations upon complexation.